RNA–Protein interactions for RNA: ENST00000551497.1

SMARCD1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 4

Gene SMARCD1, Length 536 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-211ENST00000551497 NISCHQ9Y2I1 1504 aa36.37■■■■□ 3.41
SMARCD1-211ENST00000551497 CCDC180Q9P1Z9 1646 aa32.12■■■□□ 2.73
SMARCD1-211ENST00000551497 ABCC9O60706 1549 aa31.43■■■□□ 2.62
SMARCD1-211ENST00000551497 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.47
SMARCD1-211ENST00000551497 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
SMARCD1-211ENST00000551497 NACADO15069 1562 aa30.21■■■□□ 2.43
SMARCD1-211ENST00000551497 RB1CC1Q8TDY2 1594 aa30.2■■■□□ 2.42
SMARCD1-211ENST00000551497 MYO15BQ96JP2 1530 aa30.06■■■□□ 2.4
SMARCD1-211ENST00000551497 DCAF1Q9Y4B6 1507 aa30.02■■■□□ 2.4
SMARCD1-211ENST00000551497 UNC13AQ9UPW8 1703 aa29.55■■■□□ 2.32
SMARCD1-211ENST00000551497 PABPN1Q86U42 306 aaKnown RBP eCLIP29.5■■■□□ 2.31
SMARCD1-211ENST00000551497 SCRIBQ14160 1630 aa29.45■■■□□ 2.3
SMARCD1-211ENST00000551497 BICRAQ9NZM4 1560 aa29.34■■■□□ 2.29
SMARCD1-211ENST00000551497 SHROOM4Q9ULL8 1493 aa29■■■□□ 2.23
SMARCD1-211ENST00000551497 DNAJC5BQ9UF47 199 aa28.96■■■□□ 2.23
SMARCD1-211ENST00000551497 EIF4G1Q04637 1599 aaKnown RBP28.52■■■□□ 2.16
SMARCD1-211ENST00000551497 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
SMARCD1-211ENST00000551497 CC2D2AQ9P2K1 1620 aa28.38■■■□□ 2.13
SMARCD1-211ENST00000551497 SMARCA4P51532 1647 aa28.14■■■□□ 2.1
SMARCD1-211ENST00000551497 BAZ1AQ9NRL2 1556 aaPredicted RBP28.13■■■□□ 2.09
SMARCD1-211ENST00000551497 MROH2BQ7Z745 1585 aa28.08■■■□□ 2.09
SMARCD1-211ENST00000551497 ATAD2BQ9ULI0 1458 aa27.99■■■□□ 2.07
SMARCD1-211ENST00000551497 NCAPD3P42695 1498 aa27.93■■■□□ 2.06
SMARCD1-211ENST00000551497 SMARCA2P51531 1590 aa27.9■■■□□ 2.06
SMARCD1-211ENST00000551497 RSF1Q96T23 1441 aaPredicted RBP27.84■■■□□ 2.05
SMARCD1-211ENST00000551497 PEG3Q9GZU2 1588 aa27.83■■■□□ 2.05
SMARCD1-211ENST00000551497 WIZO95785 1651 aa27.78■■■□□ 2.04
SMARCD1-211ENST00000551497 BAZ1BQ9UIG0 1483 aaKnown RBP27.75■■■□□ 2.03
SMARCD1-211ENST00000551497 HMGXB3Q12766 1538 aa27.73■■■□□ 2.03
SMARCD1-211ENST00000551497 TOP2AP11388 1531 aaKnown RBP27.42■■□□□ 1.98
SMARCD1-211ENST00000551497 SUPT5HO00267 1087 aaKnown RBP27.41■■□□□ 1.98
SMARCD1-211ENST00000551497 NESP48681 1621 aa27.27■■□□□ 1.96
SMARCD1-211ENST00000551497 CCDC88BA6NC98 1476 aa27.19■■□□□ 1.94
SMARCD1-211ENST00000551497 CADPSQ9ULU8 1353 aa27.16■■□□□ 1.94
SMARCD1-211ENST00000551497 LAMC3Q9Y6N6 1575 aa27.09■■□□□ 1.93
SMARCD1-211ENST00000551497 ERCC6Q03468 1493 aa27.01■■□□□ 1.91
SMARCD1-211ENST00000551497 CFTRP13569 1480 aa27■■□□□ 1.91
SMARCD1-211ENST00000551497 PDS5BQ9NTI5 1447 aa26.96■■□□□ 1.91
SMARCD1-211ENST00000551497 KIF21AQ7Z4S6 1674 aa26.86■■□□□ 1.89
SMARCD1-211ENST00000551497 FANCD2Q9BXW9 1451 aa26.82■■□□□ 1.88
SMARCD1-211ENST00000551497 DNAJC5Q9H3Z4 198 aa26.75■■□□□ 1.87
SMARCD1-211ENST00000551497 CEP164Q9UPV0 1460 aa26.74■■□□□ 1.87
SMARCD1-211ENST00000551497 PRDM2Q13029 1718 aa26.71■■□□□ 1.87
SMARCD1-211ENST00000551497 THOC2Q8NI27 1593 aaKnown RBP26.69■■□□□ 1.86
SMARCD1-211ENST00000551497 MRC2Q9UBG0 1479 aa26.67■■□□□ 1.86
SMARCD1-211ENST00000551497 CUX2O14529 1486 aa26.59■■□□□ 1.85
SMARCD1-211ENST00000551497 URB2Q14146 1524 aaKnown RBP26.56■■□□□ 1.84
SMARCD1-211ENST00000551497 WDR62O43379 1518 aa26.54■■□□□ 1.84
SMARCD1-211ENST00000551497 TOPBP1Q92547 1522 aa26.42■■□□□ 1.82
SMARCD1-211ENST00000551497 ABCC8Q09428 1581 aa26.37■■□□□ 1.81
SMARCD1-211ENST00000551497 DNMBPQ6XZF7 1577 aa26.36■■□□□ 1.81
SMARCD1-211ENST00000551497 CUX1P39880 1505 aa26.31■■□□□ 1.8
SMARCD1-211ENST00000551497 WRNQ14191 1432 aaPredicted RBP eCLIP26.21■■□□□ 1.79
SMARCD1-211ENST00000551497 POLA1P09884 1462 aaPredicted RBP26.2■■□□□ 1.78
SMARCD1-211ENST00000551497 FGD5Q6ZNL6 1462 aa26.18■■□□□ 1.78
SMARCD1-211ENST00000551497 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
SMARCD1-211ENST00000551497 RAD54L2Q9Y4B4 1467 aa26.16■■□□□ 1.78
SMARCD1-211ENST00000551497 SOGA1O94964 1423 aa26.15■■□□□ 1.78
SMARCD1-211ENST00000551497 SYNJ1O43426 1573 aa26.13■■□□□ 1.77
SMARCD1-211ENST00000551497 ZNF608Q9ULD9 1512 aaPredicted RBP26.12■■□□□ 1.77
SMARCD1-211ENST00000551497 TARBP1Q13395 1621 aaKnown RBP26.09■■□□□ 1.77
SMARCD1-211ENST00000551497 TOP2BQ02880 1626 aa26.08■■□□□ 1.77
SMARCD1-211ENST00000551497 BIVM-ERCC5R4GMW8 1640 aa26.06■■□□□ 1.76
SMARCD1-211ENST00000551497 TDRD9Q8NDG6 1382 aaKnown RBP26.02■■□□□ 1.76
SMARCD1-211ENST00000551497 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.765e-9■■■■□ 24.1
SMARCD1-211ENST00000551497 EIF4G3O43432 1585 aaKnown RBP25.92■■□□□ 1.74
SMARCD1-211ENST00000551497 ABCA10Q8WWZ4 1543 aa25.91■■□□□ 1.74
SMARCD1-211ENST00000551497 WDR97A6NE52 1622 aa25.87■■□□□ 1.73
SMARCD1-211ENST00000551497 TRIM41Q8WV44 630 aa25.83■■□□□ 1.73
SMARCD1-211ENST00000551497 GAPVD1Q14C86 1478 aa25.81■■□□□ 1.72
SMARCD1-211ENST00000551497 GRIN2BQ13224 1484 aa25.76■■□□□ 1.71
SMARCD1-211ENST00000551497 ABCA5Q8WWZ7 1642 aa25.75■■□□□ 1.71
SMARCD1-211ENST00000551497 FBLN2P98095 1184 aa25.71■■□□□ 1.71
SMARCD1-211ENST00000551497 SNAPC4Q5SXM2 1469 aa25.71■■□□□ 1.71
SMARCD1-211ENST00000551497 CHIC1Q5VXU3 224 aa25.69■■□□□ 1.7
SMARCD1-211ENST00000551497 PBRM1Q86U86 1689 aa25.68■■□□□ 1.7
SMARCD1-211ENST00000551497 OSCARQ8IYS5 282 aa25.67■■□□□ 1.7
SMARCD1-211ENST00000551497 KIF27Q86VH2 1401 aa25.64■■□□□ 1.7
SMARCD1-211ENST00000551497 MAGI1Q96QZ7 1491 aaPredicted RBP25.64■■□□□ 1.69
SMARCD1-211ENST00000551497 CHMP7Q8WUX9 453 aaPredicted RBP25.63■■□□□ 1.69
SMARCD1-211ENST00000551497 RUSC2Q8N2Y8 1516 aa25.58■■□□□ 1.69
SMARCD1-211ENST00000551497 IGF1RP08069 1367 aa25.58■■□□□ 1.69
SMARCD1-211ENST00000551497 CHD1O14646 1710 aa25.58■■□□□ 1.69
SMARCD1-211ENST00000551497 ERICH3Q5RHP9 1530 aa25.57■■□□□ 1.68
SMARCD1-211ENST00000551497 SYNJ2O15056 1496 aa25.56■■□□□ 1.68
SMARCD1-211ENST00000551497 FHAD1B1AJZ9 1412 aa25.51■■□□□ 1.67
SMARCD1-211ENST00000551497 ADAMTS12P58397 1594 aa25.49■■□□□ 1.67
SMARCD1-211ENST00000551497 GRIN2AQ12879 1464 aa25.42■■□□□ 1.66
SMARCD1-211ENST00000551497 CARMIL1Q5VZK9 1371 aa25.42■■□□□ 1.66
SMARCD1-211ENST00000551497 FAM9AQ8IZU1 332 aaPredicted RBP25.37■■□□□ 1.65
SMARCD1-211ENST00000551497 CUL7Q14999 1698 aa25.35■■□□□ 1.65
SMARCD1-211ENST00000551497 CSRNP3Q8WYN3 585 aa25.32■■□□□ 1.64
SMARCD1-211ENST00000551497 NUP160Q12769 1436 aa25.3■■□□□ 1.64
SMARCD1-211ENST00000551497 CEP170Q5SW79 1584 aa25.3■■□□□ 1.64
SMARCD1-211ENST00000551497 CLASP1Q7Z460 1538 aa25.29■■□□□ 1.64
SMARCD1-211ENST00000551497 RAPGEF2Q9Y4G8 1499 aa25.24■■□□□ 1.63
SMARCD1-211ENST00000551497 EEA1Q15075 1411 aa25.23■■□□□ 1.63
SMARCD1-211ENST00000551497 PRXQ9BXM0 1461 aa25.21■■□□□ 1.63
SMARCD1-211ENST00000551497 ARHGEF11O15085 1522 aa25.17■■□□□ 1.62
SMARCD1-211ENST00000551497 JPH4Q96JJ6 628 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms