RNA–Protein interactions for RNA: ENST00000550375.1

BRF1-217, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,362 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-217ENST00000550375 NISCHQ9Y2I1 1504 aa41.1■■■■■ 4.17
BRF1-217ENST00000550375 CCDC180Q9P1Z9 1646 aa36.38■■■■□ 3.42
BRF1-217ENST00000550375 ABCC9O60706 1549 aa35.33■■■■□ 3.25
BRF1-217ENST00000550375 DCAF8L2P0C7V8 631 aa34.33■■■■□ 3.09
BRF1-217ENST00000550375 ZCCHC6Q5VYS8 1495 aaKnown RBP34.31■■■■□ 3.08
BRF1-217ENST00000550375 NACADO15069 1562 aa34.11■■■■□ 3.05
BRF1-217ENST00000550375 RB1CC1Q8TDY2 1594 aa34.09■■■■□ 3.05
BRF1-217ENST00000550375 DCAF1Q9Y4B6 1507 aa33.96■■■■□ 3.03
BRF1-217ENST00000550375 MYO15BQ96JP2 1530 aa33.96■■■■□ 3.03
BRF1-217ENST00000550375 UNC13AQ9UPW8 1703 aa33.4■■■□□ 2.94
BRF1-217ENST00000550375 SCRIBQ14160 1630 aa33.31■■■□□ 2.92
BRF1-217ENST00000550375 PABPN1Q86U42 306 aaKnown RBP eCLIP33.09■■■□□ 2.89
BRF1-217ENST00000550375 BICRAQ9NZM4 1560 aa33.05■■■□□ 2.88
BRF1-217ENST00000550375 DNAJC5BQ9UF47 199 aa32.96■■■□□ 2.87
BRF1-217ENST00000550375 SHROOM4Q9ULL8 1493 aa32.81■■■□□ 2.84
BRF1-217ENST00000550375 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
BRF1-217ENST00000550375 CECR2Q9BXF3 1484 aa32.03■■■□□ 2.72
BRF1-217ENST00000550375 CC2D2AQ9P2K1 1620 aa31.95■■■□□ 2.71
BRF1-217ENST00000550375 SMARCA4P51532 1647 aa31.85■■■□□ 2.69
BRF1-217ENST00000550375 BAZ1AQ9NRL2 1556 aaPredicted RBP31.84■■■□□ 2.69
BRF1-217ENST00000550375 MROH2BQ7Z745 1585 aa31.71■■■□□ 2.67
BRF1-217ENST00000550375 ATAD2BQ9ULI0 1458 aa31.56■■■□□ 2.64
BRF1-217ENST00000550375 SMARCA2P51531 1590 aa31.53■■■□□ 2.64
BRF1-217ENST00000550375 PEG3Q9GZU2 1588 aa31.47■■■□□ 2.63
BRF1-217ENST00000550375 RSF1Q96T23 1441 aaPredicted RBP31.46■■■□□ 2.63
BRF1-217ENST00000550375 NCAPD3P42695 1498 aa31.45■■■□□ 2.63
BRF1-217ENST00000550375 WIZO95785 1651 aa31.44■■■□□ 2.62
BRF1-217ENST00000550375 HMGXB3Q12766 1538 aa31.34■■■□□ 2.61
BRF1-217ENST00000550375 BAZ1BQ9UIG0 1483 aaKnown RBP31.34■■■□□ 2.61
BRF1-217ENST00000550375 TOP2AP11388 1531 aaKnown RBP31.06■■■□□ 2.56
BRF1-217ENST00000550375 SUPT5HO00267 1087 aaKnown RBP31.04■■■□□ 2.56
BRF1-217ENST00000550375 CCDC88BA6NC98 1476 aa30.72■■■□□ 2.51
BRF1-217ENST00000550375 NESP48681 1621 aa30.68■■■□□ 2.5
BRF1-217ENST00000550375 LAMC3Q9Y6N6 1575 aa30.59■■■□□ 2.49
BRF1-217ENST00000550375 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
BRF1-217ENST00000550375 CFTRP13569 1480 aa30.46■■■□□ 2.47
BRF1-217ENST00000550375 ERCC6Q03468 1493 aa30.41■■■□□ 2.46
BRF1-217ENST00000550375 PDS5BQ9NTI5 1447 aa30.37■■■□□ 2.45
BRF1-217ENST00000550375 KIF21AQ7Z4S6 1674 aa30.35■■■□□ 2.45
BRF1-217ENST00000550375 PRDM2Q13029 1718 aa30.34■■■□□ 2.45
BRF1-217ENST00000550375 FANCD2Q9BXW9 1451 aa30.25■■■□□ 2.43
BRF1-217ENST00000550375 DNAJC5Q9H3Z4 198 aa30.21■■■□□ 2.43
BRF1-217ENST00000550375 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
BRF1-217ENST00000550375 THOC2Q8NI27 1593 aaKnown RBP30.1■■■□□ 2.41
BRF1-217ENST00000550375 MRC2Q9UBG0 1479 aa30.06■■■□□ 2.4
BRF1-217ENST00000550375 CUX2O14529 1486 aa29.98■■■□□ 2.39
BRF1-217ENST00000550375 WDR62O43379 1518 aa29.93■■■□□ 2.38
BRF1-217ENST00000550375 URB2Q14146 1524 aaKnown RBP29.93■■■□□ 2.38
BRF1-217ENST00000550375 TOPBP1Q92547 1522 aa29.82■■■□□ 2.36
BRF1-217ENST00000550375 DNMBPQ6XZF7 1577 aa29.81■■■□□ 2.36
BRF1-217ENST00000550375 ABCC8Q09428 1581 aa29.78■■■□□ 2.36
BRF1-217ENST00000550375 CUX1P39880 1505 aa29.73■■■□□ 2.35
BRF1-217ENST00000550375 WRNQ14191 1432 aaPredicted RBP eCLIP29.66■■■□□ 2.34
BRF1-217ENST00000550375 SYNJ1O43426 1573 aa29.61■■■□□ 2.33
BRF1-217ENST00000550375 POLA1P09884 1462 aaPredicted RBP29.58■■■□□ 2.33
BRF1-217ENST00000550375 FGD5Q6ZNL6 1462 aa29.58■■■□□ 2.33
BRF1-217ENST00000550375 TOP2BQ02880 1626 aa29.56■■■□□ 2.32
BRF1-217ENST00000550375 BIVM-ERCC5R4GMW8 1640 aa29.56■■■□□ 2.32
BRF1-217ENST00000550375 IFT140Q96RY7 1462 aa29.51■■■□□ 2.32
BRF1-217ENST00000550375 RAD54L2Q9Y4B4 1467 aa29.49■■■□□ 2.31
BRF1-217ENST00000550375 SOGA1O94964 1423 aa29.48■■■□□ 2.31
BRF1-217ENST00000550375 TARBP1Q13395 1621 aaKnown RBP29.47■■■□□ 2.31
BRF1-217ENST00000550375 ZNF608Q9ULD9 1512 aaPredicted RBP29.39■■■□□ 2.3
BRF1-217ENST00000550375 WDR97A6NE52 1622 aa29.32■■■□□ 2.28
BRF1-217ENST00000550375 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
BRF1-217ENST00000550375 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.28
BRF1-217ENST00000550375 TDRD9Q8NDG6 1382 aaKnown RBP29.29■■■□□ 2.28
BRF1-217ENST00000550375 ABCA10Q8WWZ4 1543 aa29.27■■■□□ 2.28
BRF1-217ENST00000550375 TRIM41Q8WV44 630 aa29.26■■■□□ 2.27
BRF1-217ENST00000550375 ABCA5Q8WWZ7 1642 aa29.15■■■□□ 2.26
BRF1-217ENST00000550375 GAPVD1Q14C86 1478 aa29.14■■■□□ 2.25
BRF1-217ENST00000550375 CHIC1Q5VXU3 224 aa29.13■■■□□ 2.25
BRF1-217ENST00000550375 PBRM1Q86U86 1689 aa29.1■■■□□ 2.25
BRF1-217ENST00000550375 GRIN2BQ13224 1484 aa29.07■■■□□ 2.24
BRF1-217ENST00000550375 SNAPC4Q5SXM2 1469 aa29.01■■■□□ 2.23
BRF1-217ENST00000550375 KIF27Q86VH2 1401 aa29.01■■■□□ 2.23
BRF1-217ENST00000550375 MAGI1Q96QZ7 1491 aaPredicted RBP28.94■■■□□ 2.22
BRF1-217ENST00000550375 ERICH3Q5RHP9 1530 aa28.93■■■□□ 2.22
BRF1-217ENST00000550375 RUSC2Q8N2Y8 1516 aa28.92■■■□□ 2.22
BRF1-217ENST00000550375 FBLN2P98095 1184 aa28.9■■■□□ 2.22
BRF1-217ENST00000550375 CHD1O14646 1710 aa28.9■■■□□ 2.22
BRF1-217ENST00000550375 ADAMTS12P58397 1594 aa28.85■■■□□ 2.21
BRF1-217ENST00000550375 IGF1RP08069 1367 aa28.84■■■□□ 2.21
BRF1-217ENST00000550375 SYNJ2O15056 1496 aa28.83■■■□□ 2.21
BRF1-217ENST00000550375 CHMP7Q8WUX9 453 aaPredicted RBP28.83■■■□□ 2.21
BRF1-217ENST00000550375 FHAD1B1AJZ9 1412 aa28.79■■■□□ 2.2
BRF1-217ENST00000550375 CUL7Q14999 1698 aa28.76■■■□□ 2.19
BRF1-217ENST00000550375 OSCARQ8IYS5 282 aa28.75■■■□□ 2.19
BRF1-217ENST00000550375 FAM9AQ8IZU1 332 aaPredicted RBP28.71■■■□□ 2.19
BRF1-217ENST00000550375 GRIN2AQ12879 1464 aa28.7■■■□□ 2.19
BRF1-217ENST00000550375 CARMIL1Q5VZK9 1371 aa28.69■■■□□ 2.18
BRF1-217ENST00000550375 EEA1Q15075 1411 aa28.66■■■□□ 2.18
BRF1-217ENST00000550375 CSRNP3Q8WYN3 585 aa28.62■■■□□ 2.17
BRF1-217ENST00000550375 CEP170Q5SW79 1584 aa28.58■■■□□ 2.17
BRF1-217ENST00000550375 RAPGEF2Q9Y4G8 1499 aa28.56■■■□□ 2.16
BRF1-217ENST00000550375 NUP160Q12769 1436 aa28.53■■■□□ 2.16
BRF1-217ENST00000550375 PRXQ9BXM0 1461 aa28.52■■■□□ 2.16
BRF1-217ENST00000550375 CLASP1Q7Z460 1538 aa28.51■■■□□ 2.16
BRF1-217ENST00000550375 KIF21BO75037 1637 aa28.37■■■□□ 2.13
BRF1-217ENST00000550375 EHMT2Q96KQ7 1210 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms