RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 NISCHQ9Y2I1 1504 aa13.01□□□□□ -0.33
SCAF11-212ENST00000549162 CCDC180Q9P1Z9 1646 aa12.27□□□□□ -0.44
SCAF11-212ENST00000549162 MYO15BQ96JP2 1530 aa11.69□□□□□ -0.54
SCAF11-212ENST00000549162 DCAF1Q9Y4B6 1507 aa11.61□□□□□ -0.55
SCAF11-212ENST00000549162 SHROOM4Q9ULL8 1493 aa11.18□□□□□ -0.62
SCAF11-212ENST00000549162 ZCCHC6Q5VYS8 1495 aaKnown RBP11.11□□□□□ -0.63
SCAF11-212ENST00000549162 NACADO15069 1562 aa11.01□□□□□ -0.65
SCAF11-212ENST00000549162 CHIC1Q5VXU3 224 aa10.95□□□□□ -0.66
SCAF11-212ENST00000549162 UNC13AQ9UPW8 1703 aa10.8□□□□□ -0.68
SCAF11-212ENST00000549162 RB1CC1Q8TDY2 1594 aa10.7□□□□□ -0.7
SCAF11-212ENST00000549162 PEG3Q9GZU2 1588 aa10.63□□□□□ -0.71
SCAF11-212ENST00000549162 AEBP2Q6ZN18 517 aaPredicted RBP10.55□□□□□ -0.72
SCAF11-212ENST00000549162 BICRAQ9NZM4 1560 aa10.48□□□□□ -0.73
SCAF11-212ENST00000549162 ABCC9O60706 1549 aa10.45□□□□□ -0.74
SCAF11-212ENST00000549162 SMARCA2P51531 1590 aa10.41□□□□□ -0.74
SCAF11-212ENST00000549162 PRDM2Q13029 1718 aa10.4□□□□□ -0.74
SCAF11-212ENST00000549162 HMGXB3Q12766 1538 aa10.23□□□□□ -0.77
SCAF11-212ENST00000549162 EIF4G1Q04637 1599 aaKnown RBP10.22□□□□□ -0.77
SCAF11-212ENST00000549162 BAZ1AQ9NRL2 1556 aaPredicted RBP10.16□□□□□ -0.78
SCAF11-212ENST00000549162 SMARCA4P51532 1647 aa10.13□□□□□ -0.79
SCAF11-212ENST00000549162 WDR97A6NE52 1622 aa10.06□□□□□ -0.8
SCAF11-212ENST00000549162 TOP2AP11388 1531 aaKnown RBP9.99□□□□□ -0.81
SCAF11-212ENST00000549162 NCAPD3P42695 1498 aa9.93□□□□□ -0.82
SCAF11-212ENST00000549162 SCRIBQ14160 1630 aa9.91□□□□□ -0.82
SCAF11-212ENST00000549162 BAZ1BQ9UIG0 1483 aaKnown RBP9.83□□□□□ -0.84
SCAF11-212ENST00000549162 BIVM-ERCC5R4GMW8 1640 aa9.83□□□□□ -0.84
SCAF11-212ENST00000549162 PHF23Q9BUL5 403 aaPredicted RBP9.82□□□□□ -0.84
SCAF11-212ENST00000549162 LAMC3Q9Y6N6 1575 aa9.76□□□□□ -0.85
SCAF11-212ENST00000549162 ATAD2BQ9ULI0 1458 aa9.71□□□□□ -0.85
SCAF11-212ENST00000549162 MROH2BQ7Z745 1585 aa9.71□□□□□ -0.86
SCAF11-212ENST00000549162 RSF1Q96T23 1441 aaPredicted RBP9.69□□□□□ -0.86
SCAF11-212ENST00000549162 CC2D2AQ9P2K1 1620 aa9.67□□□□□ -0.86
SCAF11-212ENST00000549162 WIZO95785 1651 aa9.66□□□□□ -0.86
SCAF11-212ENST00000549162 CFTRP13569 1480 aa9.57□□□□□ -0.88
SCAF11-212ENST00000549162 THOC2Q8NI27 1593 aaKnown RBP9.56□□□□□ -0.88
SCAF11-212ENST00000549162 TOP2BQ02880 1626 aa9.55□□□□□ -0.88
SCAF11-212ENST00000549162 WDR62O43379 1518 aa9.53□□□□□ -0.88
SCAF11-212ENST00000549162 ABCC8Q09428 1581 aa9.52□□□□□ -0.89
SCAF11-212ENST00000549162 CECR2Q9BXF3 1484 aa9.51□□□□□ -0.89
SCAF11-212ENST00000549162 KIF21AQ7Z4S6 1674 aa9.51□□□□□ -0.89
SCAF11-212ENST00000549162 ABCA5Q8WWZ7 1642 aa9.46□□□□□ -0.89
SCAF11-212ENST00000549162 DNMBPQ6XZF7 1577 aa9.45□□□□□ -0.9
SCAF11-212ENST00000549162 EHMT2Q96KQ7 1210 aa9.45□□□□□ -0.9
SCAF11-212ENST00000549162 TARBP1Q13395 1621 aaKnown RBP9.43□□□□□ -0.9
SCAF11-212ENST00000549162 CUL7Q14999 1698 aa9.41□□□□□ -0.9
SCAF11-212ENST00000549162 KIF21BO75037 1637 aa9.39□□□□□ -0.91
SCAF11-212ENST00000549162 CCDC88BA6NC98 1476 aa9.38□□□□□ -0.91
SCAF11-212ENST00000549162 ERICH3Q5RHP9 1530 aa9.35□□□□□ -0.91
SCAF11-212ENST00000549162 PBRM1Q86U86 1689 aa9.33□□□□□ -0.92
SCAF11-212ENST00000549162 EEA1Q15075 1411 aa9.31□□□□□ -0.92
SCAF11-212ENST00000549162 SHROOM2Q13796 1616 aa9.31□□□□□ -0.92
SCAF11-212ENST00000549162 CUX2O14529 1486 aa9.28□□□□□ -0.92
SCAF11-212ENST00000549162 ABCA10Q8WWZ4 1543 aa9.27□□□□□ -0.93
SCAF11-212ENST00000549162 CTTNBP2Q8WZ74 1663 aa9.26□□□□□ -0.93
SCAF11-212ENST00000549162 SYNJ1O43426 1573 aa9.22□□□□□ -0.93
SCAF11-212ENST00000549162 CUX1P39880 1505 aa9.21□□□□□ -0.94
SCAF11-212ENST00000549162 SLC24A1O60721 1099 aa9.21□□□□□ -0.94
SCAF11-212ENST00000549162 PLPPR3Q6T4P5 718 aa9.2□□□□□ -0.94
SCAF11-212ENST00000549162 CADPSQ9ULU8 1353 aa9.2□□□□□ -0.94
SCAF11-212ENST00000549162 MRC2Q9UBG0 1479 aa9.19□□□□□ -0.94
SCAF11-212ENST00000549162 SAMD9Q5K651 1589 aa9.18□□□□□ -0.94
SCAF11-212ENST00000549162 ADAMTS12P58397 1594 aa9.17□□□□□ -0.94
SCAF11-212ENST00000549162 MAP3K1Q13233 1512 aa9.16□□□□□ -0.94
SCAF11-212ENST00000549162 TOPBP1Q92547 1522 aa9.13□□□□□ -0.95
SCAF11-212ENST00000549162 IFT140Q96RY7 1462 aa9.11□□□□□ -0.95
SCAF11-212ENST00000549162 URB2Q14146 1524 aaKnown RBP9.11□□□□□ -0.95
SCAF11-212ENST00000549162 PDS5BQ9NTI5 1447 aa9.1□□□□□ -0.95
SCAF11-212ENST00000549162 CLASP1Q7Z460 1538 aa9.09□□□□□ -0.95
SCAF11-212ENST00000549162 NESP48681 1621 aa9.08□□□□□ -0.96
SCAF11-212ENST00000549162 ADCY10Q96PN6 1610 aa9.08□□□□□ -0.96
SCAF11-212ENST00000549162 EFCAB5A4FU69 1503 aa9.08□□□□□ -0.96
SCAF11-212ENST00000549162 CEP164Q9UPV0 1460 aa9.08□□□□□ -0.96
SCAF11-212ENST00000549162 PRXQ9BXM0 1461 aa9.08□□□□□ -0.96
SCAF11-212ENST00000549162 CFAP43Q8NDM7 1665 aa9.06□□□□□ -0.96
SCAF11-212ENST00000549162 FANCD2Q9BXW9 1451 aa9.06□□□□□ -0.96
SCAF11-212ENST00000549162 RUSC2Q8N2Y8 1516 aa9.05□□□□□ -0.96
SCAF11-212ENST00000549162 EIF4G3O43432 1585 aaKnown RBP9.05□□□□□ -0.96
SCAF11-212ENST00000549162 MAGI1Q96QZ7 1491 aaPredicted RBP9.05□□□□□ -0.96
SCAF11-212ENST00000549162 KCNA4P22459 653 aa9.05□□□□□ -0.96
SCAF11-212ENST00000549162 AQRO60306 1485 aaKnown RBP eCLIP9.04□□□□□ -0.968e-11■□□□□ 11.3
SCAF11-212ENST00000549162 UGGT2Q9NYU1 1516 aa9.03□□□□□ -0.96
SCAF11-212ENST00000549162 BCORL1Q5H9F3 1711 aa8.99□□□□□ -0.97
SCAF11-212ENST00000549162 POLA1P09884 1462 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-212ENST00000549162 WRNQ14191 1432 aaPredicted RBP eCLIP8.96□□□□□ -0.98
SCAF11-212ENST00000549162 NUP160Q12769 1436 aa8.95□□□□□ -0.98
SCAF11-212ENST00000549162 IQGAP2Q13576 1575 aa8.95□□□□□ -0.98
SCAF11-212ENST00000549162 KDM5BQ9UGL1 1544 aa8.94□□□□□ -0.98
SCAF11-212ENST00000549162 CSRNP3Q8WYN3 585 aa8.94□□□□□ -0.98
SCAF11-212ENST00000549162 ARAP3Q8WWN8 1544 aa8.92□□□□□ -0.98
SCAF11-212ENST00000549162 ARHGEF11O15085 1522 aa8.91□□□□□ -0.98
SCAF11-212ENST00000549162 FGD5Q6ZNL6 1462 aa8.91□□□□□ -0.98
SCAF11-212ENST00000549162 CHD1O14646 1710 aa8.91□□□□□ -0.98
SCAF11-212ENST00000549162 UHRF1BP1LA0JNW5 1464 aa8.9□□□□□ -0.98
SCAF11-212ENST00000549162 LRRIQ1Q96JM4 1722 aa8.9□□□□□ -0.98
SCAF11-212ENST00000549162 GRIN2BQ13224 1484 aa8.86□□□□□ -0.99
SCAF11-212ENST00000549162 SYNJ2O15056 1496 aa8.83□□□□□ -1
SCAF11-212ENST00000549162 ABCA8O94911 1581 aa8.83□□□□□ -1
SCAF11-212ENST00000549162 KIAA0556O60303 1618 aa8.83□□□□□ -1
SCAF11-212ENST00000549162 CEP170Q5SW79 1584 aa8.83□□□□□ -1
SCAF11-212ENST00000549162 FHAD1B1AJZ9 1412 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms