RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NISCHQ9Y2I1 1504 aa39.77■■■■□ 3.96
PRPF40B-208ENST00000548436 CCDC180Q9P1Z9 1646 aa34.13■■■■□ 3.05
PRPF40B-208ENST00000548436 ZCCHC6Q5VYS8 1495 aaKnown RBP33.57■■■□□ 2.97
PRPF40B-208ENST00000548436 SHROOM4Q9ULL8 1493 aa33.37■■■□□ 2.93
PRPF40B-208ENST00000548436 DCAF8L2P0C7V8 631 aa32.81■■■□□ 2.84
PRPF40B-208ENST00000548436 DCAF1Q9Y4B6 1507 aa32.72■■■□□ 2.83
PRPF40B-208ENST00000548436 SUPT5HO00267 1087 aaKnown RBP32.52■■■□□ 2.8
PRPF40B-208ENST00000548436 MYO15BQ96JP2 1530 aa31.95■■■□□ 2.71
PRPF40B-208ENST00000548436 ABCC9O60706 1549 aa31.88■■■□□ 2.69
PRPF40B-208ENST00000548436 SCRIBQ14160 1630 aa31.75■■■□□ 2.67
PRPF40B-208ENST00000548436 NACADO15069 1562 aa31.59■■■□□ 2.65
PRPF40B-208ENST00000548436 CHIC1Q5VXU3 224 aa31.52■■■□□ 2.64
PRPF40B-208ENST00000548436 RSF1Q96T23 1441 aaPredicted RBP31.26■■■□□ 2.59
PRPF40B-208ENST00000548436 RB1CC1Q8TDY2 1594 aa31.13■■■□□ 2.57
PRPF40B-208ENST00000548436 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
PRPF40B-208ENST00000548436 MROH2BQ7Z745 1585 aa30.86■■■□□ 2.53
PRPF40B-208ENST00000548436 UNC13AQ9UPW8 1703 aa30.76■■■□□ 2.51
PRPF40B-208ENST00000548436 WIZO95785 1651 aa30.7■■■□□ 2.51
PRPF40B-208ENST00000548436 BAZ1AQ9NRL2 1556 aaPredicted RBP30.58■■■□□ 2.49
PRPF40B-208ENST00000548436 LOC105371045A0A1W2PR82 267 aa30.5■■■□□ 2.47
PRPF40B-208ENST00000548436 SMARCA4P51532 1647 aa30.4■■■□□ 2.46
PRPF40B-208ENST00000548436 TRIM41Q8WV44 630 aa30.38■■■□□ 2.45
PRPF40B-208ENST00000548436 BICRAQ9NZM4 1560 aa30.32■■■□□ 2.44
PRPF40B-208ENST00000548436 TOP2AP11388 1531 aaKnown RBP30.24■■■□□ 2.43
PRPF40B-208ENST00000548436 PABPN1Q86U42 306 aaKnown RBP eCLIP30.19■■■□□ 2.42
PRPF40B-208ENST00000548436 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
PRPF40B-208ENST00000548436 SMARCA2P51531 1590 aa30.05■■■□□ 2.4
PRPF40B-208ENST00000548436 CCDC88BA6NC98 1476 aa30.05■■■□□ 2.4
PRPF40B-208ENST00000548436 FAM9AQ8IZU1 332 aaPredicted RBP30.03■■■□□ 2.4
PRPF40B-208ENST00000548436 PCGF6Q9BYE7 350 aa30.02■■■□□ 2.4
PRPF40B-208ENST00000548436 PEG3Q9GZU2 1588 aa29.89■■■□□ 2.38
PRPF40B-208ENST00000548436 HRCP23327 699 aa29.81■■■□□ 2.36
PRPF40B-208ENST00000548436 ABCC8Q09428 1581 aa29.81■■■□□ 2.36
PRPF40B-208ENST00000548436 EHMT2Q96KQ7 1210 aa29.71■■■□□ 2.35
PRPF40B-208ENST00000548436 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
PRPF40B-208ENST00000548436 TRIM26Q12899 539 aaPredicted RBP29.64■■■□□ 2.33
PRPF40B-208ENST00000548436 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
PRPF40B-208ENST00000548436 SOGA1O94964 1423 aa29.41■■■□□ 2.3
PRPF40B-208ENST00000548436 WRNQ14191 1432 aaPredicted RBP eCLIP29.36■■■□□ 2.29
PRPF40B-208ENST00000548436 RUSC2Q8N2Y8 1516 aa29.3■■■□□ 2.28
PRPF40B-208ENST00000548436 SYNJ1O43426 1573 aa29.28■■■□□ 2.28
PRPF40B-208ENST00000548436 EEA1Q15075 1411 aa29.28■■■□□ 2.28
PRPF40B-208ENST00000548436 CSRNP3Q8WYN3 585 aa29.2■■■□□ 2.26
PRPF40B-208ENST00000548436 HMGXB3Q12766 1538 aa29.2■■■□□ 2.26
PRPF40B-208ENST00000548436 NCAPD3P42695 1498 aa29.19■■■□□ 2.26
PRPF40B-208ENST00000548436 PPARGC1BQ86YN6 1023 aaKnown RBP29.18■■■□□ 2.26
PRPF40B-208ENST00000548436 TNIKQ9UKE5 1360 aa29.12■■■□□ 2.25
PRPF40B-208ENST00000548436 CEP162Q5TB80 1403 aa29.09■■■□□ 2.25
PRPF40B-208ENST00000548436 GOLGA3Q08378 1498 aa29.03■■■□□ 2.24
PRPF40B-208ENST00000548436 TOP2BQ02880 1626 aa29■■■□□ 2.23
PRPF40B-208ENST00000548436 UBTFP17480 764 aaKnown RBP28.98■■■□□ 2.23
PRPF40B-208ENST00000548436 KIF21BO75037 1637 aa28.95■■■□□ 2.22
PRPF40B-208ENST00000548436 BIVM-ERCC5R4GMW8 1640 aa28.94■■■□□ 2.22
PRPF40B-208ENST00000548436 CEP164Q9UPV0 1460 aa28.92■■■□□ 2.22
PRPF40B-208ENST00000548436 CC2D2AQ9P2K1 1620 aa28.86■■■□□ 2.21
PRPF40B-208ENST00000548436 CFTRP13569 1480 aa28.83■■■□□ 2.21
PRPF40B-208ENST00000548436 ZEB1P37275 1124 aaPredicted RBP28.81■■■□□ 2.2
PRPF40B-208ENST00000548436 CUX1P39880 1505 aa28.77■■■□□ 2.2
PRPF40B-208ENST00000548436 RAPGEF2Q9Y4G8 1499 aa28.74■■■□□ 2.19
PRPF40B-208ENST00000548436 PRDM2Q13029 1718 aa28.74■■■□□ 2.19
PRPF40B-208ENST00000548436 DNAJC5BQ9UF47 199 aa28.66■■■□□ 2.18
PRPF40B-208ENST00000548436 TTBK1Q5TCY1 1321 aaPredicted RBP28.65■■■□□ 2.18
PRPF40B-208ENST00000548436 CLIP1P30622 1438 aa28.64■■■□□ 2.18
PRPF40B-208ENST00000548436 PRXQ9BXM0 1461 aa28.56■■■□□ 2.16
PRPF40B-208ENST00000548436 CADPSQ9ULU8 1353 aa28.55■■■□□ 2.16
PRPF40B-208ENST00000548436 ERICH3Q5RHP9 1530 aa28.55■■■□□ 2.16
PRPF40B-208ENST00000548436 KIF27Q86VH2 1401 aa28.5■■■□□ 2.15
PRPF40B-208ENST00000548436 VPS8Q8N3P4 1428 aa28.5■■■□□ 2.15
PRPF40B-208ENST00000548436 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.47■■■□□ 2.15
PRPF40B-208ENST00000548436 RANGAP1P46060 587 aaPredicted RBP28.41■■■□□ 2.14
PRPF40B-208ENST00000548436 CCER1Q8TC90 406 aaPredicted RBP28.37■■■□□ 2.13
PRPF40B-208ENST00000548436 FGD5Q6ZNL6 1462 aa28.3■■■□□ 2.12
PRPF40B-208ENST00000548436 CUX2O14529 1486 aa28.29■■■□□ 2.12
PRPF40B-208ENST00000548436 ARAP1Q96P48 1450 aa28.28■■■□□ 2.12
PRPF40B-208ENST00000548436 FANCD2Q9BXW9 1451 aa28.28■■■□□ 2.12
PRPF40B-208ENST00000548436 APLP2Q06481 763 aa28.23■■■□□ 2.11
PRPF40B-208ENST00000548436 IGF1RP08069 1367 aa28.22■■■□□ 2.11
PRPF40B-208ENST00000548436 NESP48681 1621 aa28.18■■■□□ 2.1
PRPF40B-208ENST00000548436 DNMBPQ6XZF7 1577 aa28.14■■■□□ 2.1
PRPF40B-208ENST00000548436 ARHGAP35Q9NRY4 1499 aa28.1■■■□□ 2.09
PRPF40B-208ENST00000548436 CARMIL1Q5VZK9 1371 aa28.08■■■□□ 2.09
PRPF40B-208ENST00000548436 TOPBP1Q92547 1522 aa28.08■■■□□ 2.08
PRPF40B-208ENST00000548436 HNRNPUL2Q1KMD3 747 aaKnown RBP28.06■■■□□ 2.08
PRPF40B-208ENST00000548436 LAMC3Q9Y6N6 1575 aa28.04■■■□□ 2.08
PRPF40B-208ENST00000548436 RAD54L2Q9Y4B4 1467 aa28.03■■■□□ 2.08
PRPF40B-208ENST00000548436 POLA1P09884 1462 aaPredicted RBP28.02■■■□□ 2.08
PRPF40B-208ENST00000548436 ABCA10Q8WWZ4 1543 aa28■■■□□ 2.07
PRPF40B-208ENST00000548436 KANK4Q5T7N3 995 aaPredicted RBP27.99■■■□□ 2.07
PRPF40B-208ENST00000548436 URB2Q14146 1524 aaKnown RBP27.91■■■□□ 2.06
PRPF40B-208ENST00000548436 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
PRPF40B-208ENST00000548436 CUL7Q14999 1698 aa27.82■■■□□ 2.04
PRPF40B-208ENST00000548436 PDS5BQ9NTI5 1447 aa27.8■■■□□ 2.04
PRPF40B-208ENST00000548436 KIF21AQ7Z4S6 1674 aa27.8■■■□□ 2.04
PRPF40B-208ENST00000548436 RRBP1Q9P2E9 1410 aaKnown RBP27.79■■■□□ 2.04
PRPF40B-208ENST00000548436 TIAM1Q13009 1591 aa27.75■■■□□ 2.03
PRPF40B-208ENST00000548436 MAP3K1Q13233 1512 aa27.74■■■□□ 2.03
PRPF40B-208ENST00000548436 CTTNBP2Q8WZ74 1663 aa27.73■■■□□ 2.03
PRPF40B-208ENST00000548436 ABCA5Q8WWZ7 1642 aa27.72■■■□□ 2.03
PRPF40B-208ENST00000548436 FHAD1B1AJZ9 1412 aa27.67■■■□□ 2.02
PRPF40B-208ENST00000548436 TDRD9Q8NDG6 1382 aaKnown RBP27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms