RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 NISCHQ9Y2I1 1504 aa32.69■■■□□ 2.82
PTCH1-213ENST00000546820 CCDC180Q9P1Z9 1646 aa28.91■■■□□ 2.22
PTCH1-213ENST00000546820 ABCC9O60706 1549 aa28.08■■■□□ 2.08
PTCH1-213ENST00000546820 DCAF8L2P0C7V8 631 aa27.39■■□□□ 1.98
PTCH1-213ENST00000546820 ZCCHC6Q5VYS8 1495 aaKnown RBP27.25■■□□□ 1.95
PTCH1-213ENST00000546820 NACADO15069 1562 aa27.18■■□□□ 1.94
PTCH1-213ENST00000546820 RB1CC1Q8TDY2 1594 aa27.14■■□□□ 1.94
PTCH1-213ENST00000546820 MYO15BQ96JP2 1530 aa27.1■■□□□ 1.93
PTCH1-213ENST00000546820 DCAF1Q9Y4B6 1507 aa27.06■■□□□ 1.92
PTCH1-213ENST00000546820 UNC13AQ9UPW8 1703 aa26.42■■□□□ 1.82
PTCH1-213ENST00000546820 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
PTCH1-213ENST00000546820 PABPN1Q86U42 306 aaKnown RBP eCLIP26.35■■□□□ 1.81
PTCH1-213ENST00000546820 BICRAQ9NZM4 1560 aa26.23■■□□□ 1.79
PTCH1-213ENST00000546820 SHROOM4Q9ULL8 1493 aa26.05■■□□□ 1.76
PTCH1-213ENST00000546820 EIF4G1Q04637 1599 aaKnown RBP25.55■■□□□ 1.68
PTCH1-213ENST00000546820 DNAJC5BQ9UF47 199 aa25.54■■□□□ 1.68
PTCH1-213ENST00000546820 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
PTCH1-213ENST00000546820 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
PTCH1-213ENST00000546820 BAZ1AQ9NRL2 1556 aaPredicted RBP25.34■■□□□ 1.65
PTCH1-213ENST00000546820 SMARCA4P51532 1647 aa25.28■■□□□ 1.64
PTCH1-213ENST00000546820 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
PTCH1-213ENST00000546820 SMARCA2P51531 1590 aa25.12■■□□□ 1.61
PTCH1-213ENST00000546820 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
PTCH1-213ENST00000546820 NCAPD3P42695 1498 aa25.09■■□□□ 1.61
PTCH1-213ENST00000546820 PEG3Q9GZU2 1588 aa25.03■■□□□ 1.6
PTCH1-213ENST00000546820 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
PTCH1-213ENST00000546820 BAZ1BQ9UIG0 1483 aaKnown RBP24.94■■□□□ 1.58
PTCH1-213ENST00000546820 HMGXB3Q12766 1538 aa24.93■■□□□ 1.58
PTCH1-213ENST00000546820 WIZO95785 1651 aa24.91■■□□□ 1.58
PTCH1-213ENST00000546820 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
PTCH1-213ENST00000546820 TOP2AP11388 1531 aaKnown RBP24.67■■□□□ 1.54
PTCH1-213ENST00000546820 CCDC88BA6NC98 1476 aa24.42■■□□□ 1.5
PTCH1-213ENST00000546820 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
PTCH1-213ENST00000546820 LAMC3Q9Y6N6 1575 aa24.36■■□□□ 1.49
PTCH1-213ENST00000546820 NESP48681 1621 aa24.35■■□□□ 1.49
PTCH1-213ENST00000546820 CFTRP13569 1480 aa24.26■■□□□ 1.47
PTCH1-213ENST00000546820 PDS5BQ9NTI5 1447 aa24.26■■□□□ 1.47
PTCH1-213ENST00000546820 ERCC6Q03468 1493 aa24.24■■□□□ 1.47
PTCH1-213ENST00000546820 FANCD2Q9BXW9 1451 aa24.08■■□□□ 1.45
PTCH1-213ENST00000546820 KIF21AQ7Z4S6 1674 aa24.03■■□□□ 1.44
PTCH1-213ENST00000546820 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
PTCH1-213ENST00000546820 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
PTCH1-213ENST00000546820 MRC2Q9UBG0 1479 aa23.93■■□□□ 1.42
PTCH1-213ENST00000546820 THOC2Q8NI27 1593 aaKnown RBP23.86■■□□□ 1.41
PTCH1-213ENST00000546820 CUX2O14529 1486 aa23.86■■□□□ 1.41
PTCH1-213ENST00000546820 ABCC8Q09428 1581 aa23.81■■□□□ 1.4
PTCH1-213ENST00000546820 WDR62O43379 1518 aa23.79■■□□□ 1.4
PTCH1-213ENST00000546820 URB2Q14146 1524 aaKnown RBP23.78■■□□□ 1.4
PTCH1-213ENST00000546820 TOPBP1Q92547 1522 aa23.7■■□□□ 1.38
PTCH1-213ENST00000546820 DNMBPQ6XZF7 1577 aa23.69■■□□□ 1.38
PTCH1-213ENST00000546820 WRNQ14191 1432 aaPredicted RBP eCLIP23.61■■□□□ 1.37
PTCH1-213ENST00000546820 CUX1P39880 1505 aa23.59■■□□□ 1.37
PTCH1-213ENST00000546820 IFT140Q96RY7 1462 aa23.53■■□□□ 1.36
PTCH1-213ENST00000546820 POLA1P09884 1462 aaPredicted RBP23.51■■□□□ 1.35
PTCH1-213ENST00000546820 SOGA1O94964 1423 aa23.5■■□□□ 1.35
PTCH1-213ENST00000546820 FGD5Q6ZNL6 1462 aa23.5■■□□□ 1.35
PTCH1-213ENST00000546820 TOP2BQ02880 1626 aa23.48■■□□□ 1.35
PTCH1-213ENST00000546820 BIVM-ERCC5R4GMW8 1640 aa23.45■■□□□ 1.34
PTCH1-213ENST00000546820 SYNJ1O43426 1573 aa23.45■■□□□ 1.34
PTCH1-213ENST00000546820 RAD54L2Q9Y4B4 1467 aa23.42■■□□□ 1.34
PTCH1-213ENST00000546820 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
PTCH1-213ENST00000546820 TRIM41Q8WV44 630 aa23.34■■□□□ 1.33
PTCH1-213ENST00000546820 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.33
PTCH1-213ENST00000546820 TDRD9Q8NDG6 1382 aaKnown RBP23.32■■□□□ 1.32
PTCH1-213ENST00000546820 ABCA10Q8WWZ4 1543 aa23.29■■□□□ 1.32
PTCH1-213ENST00000546820 AQRO60306 1485 aaKnown RBP eCLIP23.29■■□□□ 1.32
PTCH1-213ENST00000546820 WDR97A6NE52 1622 aa23.26■■□□□ 1.31
PTCH1-213ENST00000546820 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
PTCH1-213ENST00000546820 GAPVD1Q14C86 1478 aa23.21■■□□□ 1.31
PTCH1-213ENST00000546820 CHIC1Q5VXU3 224 aa23.17■■□□□ 1.3
PTCH1-213ENST00000546820 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
PTCH1-213ENST00000546820 KIF27Q86VH2 1401 aa23.14■■□□□ 1.29
PTCH1-213ENST00000546820 ABCA5Q8WWZ7 1642 aa23.11■■□□□ 1.29
PTCH1-213ENST00000546820 FBLN2P98095 1184 aa23.07■■□□□ 1.28
PTCH1-213ENST00000546820 MAGI1Q96QZ7 1491 aaPredicted RBP23.06■■□□□ 1.28
PTCH1-213ENST00000546820 CHMP7Q8WUX9 453 aaPredicted RBP23.06■■□□□ 1.28
PTCH1-213ENST00000546820 SNAPC4Q5SXM2 1469 aa23.05■■□□□ 1.28
PTCH1-213ENST00000546820 PBRM1Q86U86 1689 aa23.05■■□□□ 1.28
PTCH1-213ENST00000546820 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
PTCH1-213ENST00000546820 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
PTCH1-213ENST00000546820 IGF1RP08069 1367 aa23■■□□□ 1.27
PTCH1-213ENST00000546820 SYNJ2O15056 1496 aa22.97■■□□□ 1.27
PTCH1-213ENST00000546820 FHAD1B1AJZ9 1412 aa22.96■■□□□ 1.27
PTCH1-213ENST00000546820 RUSC2Q8N2Y8 1516 aa22.92■■□□□ 1.26
PTCH1-213ENST00000546820 CHD1O14646 1710 aa22.89■■□□□ 1.26
PTCH1-213ENST00000546820 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.25
PTCH1-213ENST00000546820 DNAJC5Q9H3Z4 198 aa22.88■■□□□ 1.25
PTCH1-213ENST00000546820 EEA1Q15075 1411 aa22.88■■□□□ 1.25
PTCH1-213ENST00000546820 ADAMTS12P58397 1594 aa22.88■■□□□ 1.25
PTCH1-213ENST00000546820 CSRNP3Q8WYN3 585 aa22.86■■□□□ 1.25
PTCH1-213ENST00000546820 CUL7Q14999 1698 aa22.86■■□□□ 1.25
PTCH1-213ENST00000546820 GRIN2AQ12879 1464 aa22.84■■□□□ 1.25
PTCH1-213ENST00000546820 FAM9AQ8IZU1 332 aaPredicted RBP22.82■■□□□ 1.24
PTCH1-213ENST00000546820 RAPGEF2Q9Y4G8 1499 aa22.75■■□□□ 1.23
PTCH1-213ENST00000546820 NUP160Q12769 1436 aa22.72■■□□□ 1.23
PTCH1-213ENST00000546820 PRXQ9BXM0 1461 aa22.69■■□□□ 1.22
PTCH1-213ENST00000546820 CEP170Q5SW79 1584 aa22.66■■□□□ 1.22
PTCH1-213ENST00000546820 CLASP1Q7Z460 1538 aa22.65■■□□□ 1.22
PTCH1-213ENST00000546820 KIAA0586Q9BVV6 1533 aa22.62■■□□□ 1.21
PTCH1-213ENST00000546820 JPH4Q96JJ6 628 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms