RNA–Protein interactions for RNA: ENST00000546592.1

GPN3-204, Transcript of GPN-loop GTPase 3, humanhuman

TSL 3

Gene GPN3, Length 638 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-204ENST00000546592 NISCHQ9Y2I1 1504 aa46.08■■■■■ 4.97
GPN3-204ENST00000546592 CCDC180Q9P1Z9 1646 aa40.81■■■■■ 4.12
GPN3-204ENST00000546592 ABCC9O60706 1549 aa39.59■■■■□ 3.93
GPN3-204ENST00000546592 ZCCHC6Q5VYS8 1495 aaKnown RBP38.46■■■■□ 3.75
GPN3-204ENST00000546592 DCAF8L2P0C7V8 631 aa38.44■■■■□ 3.74
GPN3-204ENST00000546592 NACADO15069 1562 aa38.31■■■■□ 3.72
GPN3-204ENST00000546592 RB1CC1Q8TDY2 1594 aa38.27■■■■□ 3.72
GPN3-204ENST00000546592 MYO15BQ96JP2 1530 aa38.2■■■■□ 3.71
GPN3-204ENST00000546592 DCAF1Q9Y4B6 1507 aa38.16■■■■□ 3.7
GPN3-204ENST00000546592 UNC13AQ9UPW8 1703 aa37.3■■■■□ 3.56
GPN3-204ENST00000546592 SCRIBQ14160 1630 aa37.25■■■■□ 3.55
GPN3-204ENST00000546592 PABPN1Q86U42 306 aaKnown RBP eCLIP37.07■■■■□ 3.52
GPN3-204ENST00000546592 BICRAQ9NZM4 1560 aa37.02■■■■□ 3.52
GPN3-204ENST00000546592 SHROOM4Q9ULL8 1493 aa36.75■■■■□ 3.47
GPN3-204ENST00000546592 EIF4G1Q04637 1599 aaKnown RBP36.05■■■■□ 3.36
GPN3-204ENST00000546592 DNAJC5BQ9UF47 199 aa35.96■■■■□ 3.35
GPN3-204ENST00000546592 CECR2Q9BXF3 1484 aa35.84■■■■□ 3.33
GPN3-204ENST00000546592 CC2D2AQ9P2K1 1620 aa35.81■■■■□ 3.32
GPN3-204ENST00000546592 BAZ1AQ9NRL2 1556 aaPredicted RBP35.72■■■■□ 3.31
GPN3-204ENST00000546592 SMARCA4P51532 1647 aa35.67■■■■□ 3.3
GPN3-204ENST00000546592 MROH2BQ7Z745 1585 aa35.51■■■■□ 3.27
GPN3-204ENST00000546592 SMARCA2P51531 1590 aa35.41■■■■□ 3.26
GPN3-204ENST00000546592 ATAD2BQ9ULI0 1458 aa35.4■■■■□ 3.26
GPN3-204ENST00000546592 NCAPD3P42695 1498 aa35.34■■■■□ 3.25
GPN3-204ENST00000546592 PEG3Q9GZU2 1588 aa35.31■■■■□ 3.24
GPN3-204ENST00000546592 RSF1Q96T23 1441 aaPredicted RBP35.24■■■■□ 3.23
GPN3-204ENST00000546592 HMGXB3Q12766 1538 aa35.19■■■■□ 3.22
GPN3-204ENST00000546592 BAZ1BQ9UIG0 1483 aaKnown RBP35.16■■■■□ 3.22
GPN3-204ENST00000546592 WIZO95785 1651 aa35.13■■■■□ 3.21
GPN3-204ENST00000546592 TOP2AP11388 1531 aaKnown RBP34.82■■■■□ 3.16
GPN3-204ENST00000546592 SUPT5HO00267 1087 aaKnown RBP34.69■■■■□ 3.14
GPN3-204ENST00000546592 CCDC88BA6NC98 1476 aa34.4■■■■□ 3.1
GPN3-204ENST00000546592 LAMC3Q9Y6N6 1575 aa34.36■■■■□ 3.09
GPN3-204ENST00000546592 CADPSQ9ULU8 1353 aa34.35■■■■□ 3.09
GPN3-204ENST00000546592 NESP48681 1621 aa34.33■■■■□ 3.09
GPN3-204ENST00000546592 CFTRP13569 1480 aa34.2■■■■□ 3.06
GPN3-204ENST00000546592 PDS5BQ9NTI5 1447 aa34.15■■■■□ 3.06
GPN3-204ENST00000546592 ERCC6Q03468 1493 aa34.14■■■■□ 3.06
GPN3-204ENST00000546592 FANCD2Q9BXW9 1451 aa33.95■■■■□ 3.02
GPN3-204ENST00000546592 KIF21AQ7Z4S6 1674 aa33.93■■■■□ 3.02
GPN3-204ENST00000546592 PRDM2Q13029 1718 aa33.93■■■■□ 3.02
GPN3-204ENST00000546592 CEP164Q9UPV0 1460 aa33.88■■■■□ 3.01
GPN3-204ENST00000546592 MRC2Q9UBG0 1479 aa33.74■■■□□ 2.99
GPN3-204ENST00000546592 THOC2Q8NI27 1593 aaKnown RBP33.72■■■□□ 2.99
GPN3-204ENST00000546592 CUX2O14529 1486 aa33.63■■■□□ 2.97
GPN3-204ENST00000546592 WDR62O43379 1518 aa33.59■■■□□ 2.97
GPN3-204ENST00000546592 URB2Q14146 1524 aaKnown RBP33.54■■■□□ 2.96
GPN3-204ENST00000546592 ABCC8Q09428 1581 aa33.51■■■□□ 2.95
GPN3-204ENST00000546592 TOPBP1Q92547 1522 aa33.43■■■□□ 2.94
GPN3-204ENST00000546592 DNMBPQ6XZF7 1577 aa33.43■■■□□ 2.94
GPN3-204ENST00000546592 CUX1P39880 1505 aa33.28■■■□□ 2.92
GPN3-204ENST00000546592 WRNQ14191 1432 aaPredicted RBP eCLIP33.26■■■□□ 2.91
GPN3-204ENST00000546592 POLA1P09884 1462 aaPredicted RBP33.16■■■□□ 2.9
GPN3-204ENST00000546592 IFT140Q96RY7 1462 aa33.16■■■□□ 2.9
GPN3-204ENST00000546592 FGD5Q6ZNL6 1462 aa33.14■■■□□ 2.9
GPN3-204ENST00000546592 TOP2BQ02880 1626 aa33.11■■■□□ 2.89
GPN3-204ENST00000546592 BIVM-ERCC5R4GMW8 1640 aa33.1■■■□□ 2.89
GPN3-204ENST00000546592 SYNJ1O43426 1573 aa33.09■■■□□ 2.89
GPN3-204ENST00000546592 SOGA1O94964 1423 aa33.08■■■□□ 2.89
GPN3-204ENST00000546592 RAD54L2Q9Y4B4 1467 aa33■■■□□ 2.87
GPN3-204ENST00000546592 TARBP1Q13395 1621 aaKnown RBP33■■■□□ 2.87
GPN3-204ENST00000546592 ZNF608Q9ULD9 1512 aaPredicted RBP32.92■■■□□ 2.86
GPN3-204ENST00000546592 ABCA10Q8WWZ4 1543 aa32.85■■■□□ 2.85
GPN3-204ENST00000546592 TDRD9Q8NDG6 1382 aaKnown RBP32.83■■■□□ 2.85
GPN3-204ENST00000546592 WDR97A6NE52 1622 aa32.82■■■□□ 2.84
GPN3-204ENST00000546592 EIF4G3O43432 1585 aaKnown RBP32.82■■■□□ 2.84
GPN3-204ENST00000546592 AQRO60306 1485 aaKnown RBP eCLIP32.8■■■□□ 2.84
GPN3-204ENST00000546592 TRIM41Q8WV44 630 aa32.77■■■□□ 2.84
GPN3-204ENST00000546592 GAPVD1Q14C86 1478 aa32.68■■■□□ 2.82
GPN3-204ENST00000546592 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
GPN3-204ENST00000546592 GRIN2BQ13224 1484 aa32.64■■■□□ 2.82
GPN3-204ENST00000546592 CHIC1Q5VXU3 224 aa32.56■■■□□ 2.8
GPN3-204ENST00000546592 KIF27Q86VH2 1401 aa32.56■■■□□ 2.8
GPN3-204ENST00000546592 PBRM1Q86U86 1689 aa32.54■■■□□ 2.8
GPN3-204ENST00000546592 SNAPC4Q5SXM2 1469 aa32.52■■■□□ 2.8
GPN3-204ENST00000546592 MAGI1Q96QZ7 1491 aaPredicted RBP32.52■■■□□ 2.8
GPN3-204ENST00000546592 ERICH3Q5RHP9 1530 aa32.46■■■□□ 2.79
GPN3-204ENST00000546592 FBLN2P98095 1184 aa32.41■■■□□ 2.78
GPN3-204ENST00000546592 CHMP7Q8WUX9 453 aaPredicted RBP32.39■■■□□ 2.78
GPN3-204ENST00000546592 SYNJ2O15056 1496 aa32.37■■■□□ 2.77
GPN3-204ENST00000546592 IGF1RP08069 1367 aa32.34■■■□□ 2.77
GPN3-204ENST00000546592 OSCARQ8IYS5 282 aa32.34■■■□□ 2.77
GPN3-204ENST00000546592 FHAD1B1AJZ9 1412 aa32.34■■■□□ 2.77
GPN3-204ENST00000546592 ADAMTS12P58397 1594 aa32.32■■■□□ 2.77
GPN3-204ENST00000546592 CHD1O14646 1710 aa32.31■■■□□ 2.76
GPN3-204ENST00000546592 RUSC2Q8N2Y8 1516 aa32.29■■■□□ 2.76
GPN3-204ENST00000546592 CUL7Q14999 1698 aa32.24■■■□□ 2.75
GPN3-204ENST00000546592 EEA1Q15075 1411 aa32.2■■■□□ 2.75
GPN3-204ENST00000546592 GRIN2AQ12879 1464 aa32.2■■■□□ 2.75
GPN3-204ENST00000546592 CARMIL1Q5VZK9 1371 aa32.19■■■□□ 2.74
GPN3-204ENST00000546592 DNAJC5Q9H3Z4 198 aa32.17■■■□□ 2.74
GPN3-204ENST00000546592 CSRNP3Q8WYN3 585 aa32.1■■■□□ 2.73
GPN3-204ENST00000546592 FAM9AQ8IZU1 332 aaPredicted RBP32.05■■■□□ 2.72
GPN3-204ENST00000546592 RAPGEF2Q9Y4G8 1499 aa32.03■■■□□ 2.72
GPN3-204ENST00000546592 NUP160Q12769 1436 aa32.03■■■□□ 2.72
GPN3-204ENST00000546592 CEP170Q5SW79 1584 aa31.99■■■□□ 2.71
GPN3-204ENST00000546592 CLASP1Q7Z460 1538 aa31.99■■■□□ 2.71
GPN3-204ENST00000546592 PRXQ9BXM0 1461 aa31.98■■■□□ 2.71
GPN3-204ENST00000546592 KIAA0586Q9BVV6 1533 aa31.85■■■□□ 2.69
GPN3-204ENST00000546592 KIF21BO75037 1637 aa31.77■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms