RNA–Protein interactions for RNA: ENST00000546073.5

CD9-211, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 1,072 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-211ENST00000546073 NISCHQ9Y2I1 1504 aa41.52■■■■■ 4.24
CD9-211ENST00000546073 CCDC180Q9P1Z9 1646 aa36.77■■■■□ 3.48
CD9-211ENST00000546073 ABCC9O60706 1549 aa35.94■■■■□ 3.34
CD9-211ENST00000546073 DCAF8L2P0C7V8 631 aa35■■■■□ 3.19
CD9-211ENST00000546073 RB1CC1Q8TDY2 1594 aa34.67■■■■□ 3.14
CD9-211ENST00000546073 NACADO15069 1562 aa34.66■■■■□ 3.14
CD9-211ENST00000546073 ZCCHC6Q5VYS8 1495 aaKnown RBP34.57■■■■□ 3.12
CD9-211ENST00000546073 MYO15BQ96JP2 1530 aa34.46■■■■□ 3.11
CD9-211ENST00000546073 DCAF1Q9Y4B6 1507 aa34.35■■■■□ 3.09
CD9-211ENST00000546073 PABPN1Q86U42 306 aaKnown RBP eCLIP33.69■■■□□ 2.98
CD9-211ENST00000546073 SCRIBQ14160 1630 aa33.61■■■□□ 2.97
CD9-211ENST00000546073 UNC13AQ9UPW8 1703 aa33.54■■■□□ 2.96
CD9-211ENST00000546073 BICRAQ9NZM4 1560 aa33.36■■■□□ 2.93
CD9-211ENST00000546073 SHROOM4Q9ULL8 1493 aa33.28■■■□□ 2.92
CD9-211ENST00000546073 DNAJC5BQ9UF47 199 aa32.71■■■□□ 2.83
CD9-211ENST00000546073 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
CD9-211ENST00000546073 CC2D2AQ9P2K1 1620 aa32.43■■■□□ 2.78
CD9-211ENST00000546073 CECR2Q9BXF3 1484 aa32.31■■■□□ 2.76
CD9-211ENST00000546073 BAZ1AQ9NRL2 1556 aaPredicted RBP32.24■■■□□ 2.75
CD9-211ENST00000546073 SMARCA4P51532 1647 aa32.13■■■□□ 2.73
CD9-211ENST00000546073 SMARCA2P51531 1590 aa32.02■■■□□ 2.72
CD9-211ENST00000546073 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
CD9-211ENST00000546073 NCAPD3P42695 1498 aa31.96■■■□□ 2.71
CD9-211ENST00000546073 MROH2BQ7Z745 1585 aa31.94■■■□□ 2.7
CD9-211ENST00000546073 BAZ1BQ9UIG0 1483 aaKnown RBP31.82■■■□□ 2.68
CD9-211ENST00000546073 PEG3Q9GZU2 1588 aa31.79■■■□□ 2.68
CD9-211ENST00000546073 HMGXB3Q12766 1538 aa31.78■■■□□ 2.68
CD9-211ENST00000546073 RSF1Q96T23 1441 aaPredicted RBP31.71■■■□□ 2.67
CD9-211ENST00000546073 WIZO95785 1651 aa31.58■■■□□ 2.65
CD9-211ENST00000546073 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
CD9-211ENST00000546073 SUPT5HO00267 1087 aaKnown RBP31.3■■■□□ 2.6
CD9-211ENST00000546073 ERCC6Q03468 1493 aa31.13■■■□□ 2.57
CD9-211ENST00000546073 CADPSQ9ULU8 1353 aa31.12■■■□□ 2.57
CD9-211ENST00000546073 LAMC3Q9Y6N6 1575 aa31.09■■■□□ 2.57
CD9-211ENST00000546073 NESP48681 1621 aa31.05■■■□□ 2.56
CD9-211ENST00000546073 PDS5BQ9NTI5 1447 aa31.04■■■□□ 2.56
CD9-211ENST00000546073 CCDC88BA6NC98 1476 aa31■■■□□ 2.55
CD9-211ENST00000546073 CFTRP13569 1480 aa30.88■■■□□ 2.53
CD9-211ENST00000546073 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
CD9-211ENST00000546073 CEP164Q9UPV0 1460 aa30.7■■■□□ 2.51
CD9-211ENST00000546073 CUX2O14529 1486 aa30.63■■■□□ 2.49
CD9-211ENST00000546073 KIF21AQ7Z4S6 1674 aa30.61■■■□□ 2.49
CD9-211ENST00000546073 MRC2Q9UBG0 1479 aa30.58■■■□□ 2.49
CD9-211ENST00000546073 PRDM2Q13029 1718 aa30.5■■■□□ 2.47
CD9-211ENST00000546073 THOC2Q8NI27 1593 aaKnown RBP30.47■■■□□ 2.47
CD9-211ENST00000546073 WDR62O43379 1518 aa30.37■■■□□ 2.45
CD9-211ENST00000546073 ABCC8Q09428 1581 aa30.37■■■□□ 2.45
CD9-211ENST00000546073 URB2Q14146 1524 aaKnown RBP30.28■■■□□ 2.44
CD9-211ENST00000546073 TOPBP1Q92547 1522 aa30.2■■■□□ 2.42
CD9-211ENST00000546073 DNMBPQ6XZF7 1577 aa30.18■■■□□ 2.42
CD9-211ENST00000546073 IFT140Q96RY7 1462 aa30.06■■■□□ 2.4
CD9-211ENST00000546073 WRNQ14191 1432 aaPredicted RBP eCLIP30■■■□□ 2.39
CD9-211ENST00000546073 SOGA1O94964 1423 aa29.96■■■□□ 2.39
CD9-211ENST00000546073 CUX1P39880 1505 aa29.96■■■□□ 2.39
CD9-211ENST00000546073 POLA1P09884 1462 aaPredicted RBP29.93■■■□□ 2.38
CD9-211ENST00000546073 FGD5Q6ZNL6 1462 aa29.92■■■□□ 2.38
CD9-211ENST00000546073 RAD54L2Q9Y4B4 1467 aa29.81■■■□□ 2.36
CD9-211ENST00000546073 TOP2BQ02880 1626 aa29.78■■■□□ 2.36
CD9-211ENST00000546073 ZNF608Q9ULD9 1512 aaPredicted RBP29.76■■■□□ 2.35
CD9-211ENST00000546073 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
CD9-211ENST00000546073 TDRD9Q8NDG6 1382 aaKnown RBP29.73■■■□□ 2.35
CD9-211ENST00000546073 BIVM-ERCC5R4GMW8 1640 aa29.72■■■□□ 2.35
CD9-211ENST00000546073 SYNJ1O43426 1573 aa29.72■■■□□ 2.35
CD9-211ENST00000546073 AQRO60306 1485 aaKnown RBP eCLIP29.7■■■□□ 2.35
CD9-211ENST00000546073 WDR97A6NE52 1622 aa29.66■■■□□ 2.34
CD9-211ENST00000546073 ABCA10Q8WWZ4 1543 aa29.64■■■□□ 2.34
CD9-211ENST00000546073 EIF4G3O43432 1585 aaKnown RBP29.64■■■□□ 2.33
CD9-211ENST00000546073 TRIM41Q8WV44 630 aa29.61■■■□□ 2.33
CD9-211ENST00000546073 FBLN2P98095 1184 aa29.58■■■□□ 2.33
CD9-211ENST00000546073 GAPVD1Q14C86 1478 aa29.57■■■□□ 2.32
CD9-211ENST00000546073 GRIN2BQ13224 1484 aa29.56■■■□□ 2.32
CD9-211ENST00000546073 OSCARQ8IYS5 282 aa29.56■■■□□ 2.32
CD9-211ENST00000546073 DNAJC5Q9H3Z4 198 aa29.52■■■□□ 2.32
CD9-211ENST00000546073 CHMP7Q8WUX9 453 aaPredicted RBP29.51■■■□□ 2.31
CD9-211ENST00000546073 MAGI1Q96QZ7 1491 aaPredicted RBP29.44■■■□□ 2.3
CD9-211ENST00000546073 KIF27Q86VH2 1401 aa29.44■■■□□ 2.3
CD9-211ENST00000546073 SNAPC4Q5SXM2 1469 aa29.43■■■□□ 2.3
CD9-211ENST00000546073 ABCA5Q8WWZ7 1642 aa29.38■■■□□ 2.29
CD9-211ENST00000546073 SYNJ2O15056 1496 aa29.32■■■□□ 2.28
CD9-211ENST00000546073 PBRM1Q86U86 1689 aa29.31■■■□□ 2.28
CD9-211ENST00000546073 ERICH3Q5RHP9 1530 aa29.31■■■□□ 2.28
CD9-211ENST00000546073 FHAD1B1AJZ9 1412 aa29.27■■■□□ 2.28
CD9-211ENST00000546073 IGF1RP08069 1367 aa29.18■■■□□ 2.26
CD9-211ENST00000546073 CHIC1Q5VXU3 224 aa29.18■■■□□ 2.26
CD9-211ENST00000546073 CHD1O14646 1710 aa29.17■■■□□ 2.26
CD9-211ENST00000546073 ADAMTS12P58397 1594 aa29.13■■■□□ 2.25
CD9-211ENST00000546073 GRIN2AQ12879 1464 aa29.11■■■□□ 2.25
CD9-211ENST00000546073 CARMIL1Q5VZK9 1371 aa29.1■■■□□ 2.25
CD9-211ENST00000546073 CUL7Q14999 1698 aa29.06■■■□□ 2.24
CD9-211ENST00000546073 EEA1Q15075 1411 aa29.01■■■□□ 2.23
CD9-211ENST00000546073 CSRNP3Q8WYN3 585 aa28.97■■■□□ 2.23
CD9-211ENST00000546073 RUSC2Q8N2Y8 1516 aa28.97■■■□□ 2.23
CD9-211ENST00000546073 NUP160Q12769 1436 aa28.94■■■□□ 2.22
CD9-211ENST00000546073 FAM9AQ8IZU1 332 aaPredicted RBP28.93■■■□□ 2.22
CD9-211ENST00000546073 RAPGEF2Q9Y4G8 1499 aa28.91■■■□□ 2.22
CD9-211ENST00000546073 CLASP1Q7Z460 1538 aa28.89■■■□□ 2.22
CD9-211ENST00000546073 CEP170Q5SW79 1584 aa28.85■■■□□ 2.21
CD9-211ENST00000546073 JPH4Q96JJ6 628 aa28.84■■■□□ 2.21
CD9-211ENST00000546073 ARHGEF11O15085 1522 aa28.84■■■□□ 2.21
CD9-211ENST00000546073 KIAA0586Q9BVV6 1533 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms