RNA–Protein interactions for RNA: ENST00000544872.1

CIT-216, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-216ENST00000544872 NISCHQ9Y2I1 1504 aa22.22■■□□□ 1.15
CIT-216ENST00000544872 ABCC9O60706 1549 aa21.84■■□□□ 1.09
CIT-216ENST00000544872 DNAJC5BQ9UF47 199 aa21.58■■□□□ 1.05
CIT-216ENST00000544872 DNAJC5Q9H3Z4 198 aa20.8■□□□□ 0.92
CIT-216ENST00000544872 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
CIT-216ENST00000544872 PABPN1Q86U42 306 aaKnown RBP eCLIP20.19■□□□□ 0.82
CIT-216ENST00000544872 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
CIT-216ENST00000544872 CECR2Q9BXF3 1484 aa19.79■□□□□ 0.76
CIT-216ENST00000544872 NACADO15069 1562 aa19.64■□□□□ 0.73
CIT-216ENST00000544872 DCAF8L2P0C7V8 631 aa19.6■□□□□ 0.73
CIT-216ENST00000544872 CC2D2AQ9P2K1 1620 aa19.57■□□□□ 0.72
CIT-216ENST00000544872 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
CIT-216ENST00000544872 TRIM41Q8WV44 630 aa19.53■□□□□ 0.72
CIT-216ENST00000544872 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
CIT-216ENST00000544872 CUX2O14529 1486 aa19.28■□□□□ 0.68
CIT-216ENST00000544872 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
CIT-216ENST00000544872 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
CIT-216ENST00000544872 ERCC6Q03468 1493 aa19.02■□□□□ 0.63
CIT-216ENST00000544872 MYO15BQ96JP2 1530 aa18.85■□□□□ 0.61
CIT-216ENST00000544872 AEBP2Q6ZN18 517 aaPredicted RBP18.79■□□□□ 0.6
CIT-216ENST00000544872 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
CIT-216ENST00000544872 ZCCHC6Q5VYS8 1495 aaKnown RBP18.49■□□□□ 0.55
CIT-216ENST00000544872 DCAF1Q9Y4B6 1507 aa18.39■□□□□ 0.54
CIT-216ENST00000544872 NESP48681 1621 aa18.34■□□□□ 0.53
CIT-216ENST00000544872 TRHP20396 242 aaPredicted RBP18.32■□□□□ 0.52
CIT-216ENST00000544872 THOC2Q8NI27 1593 aaKnown RBP18.32■□□□□ 0.52
CIT-216ENST00000544872 OSCARQ8IYS5 282 aa18.31■□□□□ 0.52
CIT-216ENST00000544872 SMARCA2P51531 1590 aa18.24■□□□□ 0.51
CIT-216ENST00000544872 BAZ1AQ9NRL2 1556 aaPredicted RBP18.17■□□□□ 0.5
CIT-216ENST00000544872 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
CIT-216ENST00000544872 ILDR1Q86SU0 546 aaPredicted RBP18.11■□□□□ 0.49
CIT-216ENST00000544872 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
CIT-216ENST00000544872 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
CIT-216ENST00000544872 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
CIT-216ENST00000544872 CYB5RLQ6IPT4 315 aa18.01■□□□□ 0.47
CIT-216ENST00000544872 KIF21AQ7Z4S6 1674 aa17.99■□□□□ 0.47
CIT-216ENST00000544872 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
CIT-216ENST00000544872 LAMC3Q9Y6N6 1575 aa17.95■□□□□ 0.46
CIT-216ENST00000544872 ATAD2BQ9ULI0 1458 aa17.93■□□□□ 0.46
CIT-216ENST00000544872 ARHGEF11O15085 1522 aa17.92■□□□□ 0.46
CIT-216ENST00000544872 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
CIT-216ENST00000544872 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
CIT-216ENST00000544872 WDR62O43379 1518 aa17.79■□□□□ 0.44
CIT-216ENST00000544872 BAZ1BQ9UIG0 1483 aaKnown RBP17.75■□□□□ 0.43
CIT-216ENST00000544872 ARAP1Q96P48 1450 aa17.64■□□□□ 0.41
CIT-216ENST00000544872 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
CIT-216ENST00000544872 CEP164Q9UPV0 1460 aa17.56■□□□□ 0.4
CIT-216ENST00000544872 SMARCA4P51532 1647 aa17.56■□□□□ 0.4
CIT-216ENST00000544872 FANCD2Q9BXW9 1451 aa17.42■□□□□ 0.38
CIT-216ENST00000544872 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.38
CIT-216ENST00000544872 FBLN2P98095 1184 aa17.38■□□□□ 0.37
CIT-216ENST00000544872 ZNF608Q9ULD9 1512 aaPredicted RBP17.33■□□□□ 0.37
CIT-216ENST00000544872 PEG3Q9GZU2 1588 aa17.32■□□□□ 0.36
CIT-216ENST00000544872 URB2Q14146 1524 aaKnown RBP17.3■□□□□ 0.36
CIT-216ENST00000544872 IFT140Q96RY7 1462 aa17.24■□□□□ 0.35
CIT-216ENST00000544872 CHD1O14646 1710 aa17.24■□□□□ 0.35
CIT-216ENST00000544872 KDM4FA0A1W2PPD8 638 aa17.24■□□□□ 0.35
CIT-216ENST00000544872 FBXO41Q8TF61 875 aa17.16■□□□□ 0.34
CIT-216ENST00000544872 LMTK3Q96Q04 1460 aa17.15■□□□□ 0.34
CIT-216ENST00000544872 EIF4G3O43432 1585 aaKnown RBP17.13■□□□□ 0.33
CIT-216ENST00000544872 MROH2BQ7Z745 1585 aa17.08■□□□□ 0.32
CIT-216ENST00000544872 CFTRP13569 1480 aa17.07■□□□□ 0.32
CIT-216ENST00000544872 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.321e-7■■■■■ 32.3
CIT-216ENST00000544872 ERCC6L2Q5T890 1561 aa17.05■□□□□ 0.32
CIT-216ENST00000544872 SOCS7O14512 581 aa17.04■□□□□ 0.32
CIT-216ENST00000544872 GAPVD1Q14C86 1478 aa17.03■□□□□ 0.32
CIT-216ENST00000544872 CLASP1Q7Z460 1538 aa16.98■□□□□ 0.31
CIT-216ENST00000544872 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
CIT-216ENST00000544872 HECW2Q9P2P5 1572 aa16.96■□□□□ 0.31
CIT-216ENST00000544872 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
CIT-216ENST00000544872 TOPBP1Q92547 1522 aa16.91■□□□□ 0.3
CIT-216ENST00000544872 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
CIT-216ENST00000544872 ILDR2Q71H61 639 aa16.89■□□□□ 0.29
CIT-216ENST00000544872 FAM69CQ0P6D2 419 aa16.86■□□□□ 0.29
CIT-216ENST00000544872 KIF13AQ9H1H9 1805 aa16.86■□□□□ 0.29
CIT-216ENST00000544872 SNAPC4Q5SXM2 1469 aa16.83■□□□□ 0.28
CIT-216ENST00000544872 DISP3Q9P2K9 1392 aa16.83■□□□□ 0.28
CIT-216ENST00000544872 WIZO95785 1651 aa16.82■□□□□ 0.28
CIT-216ENST00000544872 KDM6BO15054 1643 aa16.82■□□□□ 0.28
CIT-216ENST00000544872 SYNJ2O15056 1496 aa16.81■□□□□ 0.28
CIT-216ENST00000544872 ADGRL1O94910 1474 aa16.8■□□□□ 0.28
CIT-216ENST00000544872 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
CIT-216ENST00000544872 TDRD9Q8NDG6 1382 aaKnown RBP16.78■□□□□ 0.28
CIT-216ENST00000544872 TARBP1Q13395 1621 aaKnown RBP16.78■□□□□ 0.28
CIT-216ENST00000544872 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
CIT-216ENST00000544872 DNMBPQ6XZF7 1577 aa16.71■□□□□ 0.27
CIT-216ENST00000544872 PRDM2Q13029 1718 aa16.7■□□□□ 0.26
CIT-216ENST00000544872 MAGI1Q96QZ7 1491 aaPredicted RBP16.69■□□□□ 0.26
CIT-216ENST00000544872 ABCC10Q5T3U5 1492 aa16.67■□□□□ 0.26
CIT-216ENST00000544872 NPM1P06748 294 aaKnown RBP eCLIP16.66■□□□□ 0.26
CIT-216ENST00000544872 RAD54L2Q9Y4B4 1467 aa16.66■□□□□ 0.26
CIT-216ENST00000544872 POLA1P09884 1462 aaPredicted RBP16.65■□□□□ 0.26
CIT-216ENST00000544872 SOGA1O94964 1423 aa16.62■□□□□ 0.25
CIT-216ENST00000544872 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
CIT-216ENST00000544872 TSPOAP1O95153 1857 aa16.59■□□□□ 0.25
CIT-216ENST00000544872 GRIN2BQ13224 1484 aa16.59■□□□□ 0.25
CIT-216ENST00000544872 DIP2BQ9P265 1576 aa16.55■□□□□ 0.24
CIT-216ENST00000544872 CEP170Q5SW79 1584 aa16.52■□□□□ 0.24
CIT-216ENST00000544872 WDR97A6NE52 1622 aa16.51■□□□□ 0.23
CIT-216ENST00000544872 MAPKBP1O60336 1514 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms