RNA–Protein interactions for RNA: ENST00000543928.5

SP140-213, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-213ENST00000543928 NISCHQ9Y2I1 1504 aa32.53■■■□□ 2.8
SP140-213ENST00000543928 CCDC180Q9P1Z9 1646 aa28.77■■■□□ 2.2
SP140-213ENST00000543928 ABCC9O60706 1549 aa27.91■■■□□ 2.06
SP140-213ENST00000543928 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
SP140-213ENST00000543928 DCAF8L2P0C7V8 631 aa27.1■■□□□ 1.93
SP140-213ENST00000543928 NACADO15069 1562 aa26.99■■□□□ 1.91
SP140-213ENST00000543928 RB1CC1Q8TDY2 1594 aa26.95■■□□□ 1.9
SP140-213ENST00000543928 MYO15BQ96JP2 1530 aa26.91■■□□□ 1.9
SP140-213ENST00000543928 DCAF1Q9Y4B6 1507 aa26.91■■□□□ 1.9
SP140-213ENST00000543928 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
SP140-213ENST00000543928 SCRIBQ14160 1630 aa26.31■■□□□ 1.8
SP140-213ENST00000543928 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
SP140-213ENST00000543928 BICRAQ9NZM4 1560 aa26.12■■□□□ 1.77
SP140-213ENST00000543928 SHROOM4Q9ULL8 1493 aa25.92■■□□□ 1.74
SP140-213ENST00000543928 AEBP2Q6ZN18 517 aaPredicted RBP25.55■■□□□ 1.68
SP140-213ENST00000543928 EIF4G1Q04637 1599 aaKnown RBP25.42■■□□□ 1.66
SP140-213ENST00000543928 DNAJC5BQ9UF47 199 aa25.35■■□□□ 1.65
SP140-213ENST00000543928 CECR2Q9BXF3 1484 aa25.33■■□□□ 1.65
SP140-213ENST00000543928 CC2D2AQ9P2K1 1620 aa25.24■■□□□ 1.63
SP140-213ENST00000543928 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
SP140-213ENST00000543928 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
SP140-213ENST00000543928 SMARCA4P51532 1647 aa25.18■■□□□ 1.62
SP140-213ENST00000543928 MROH2BQ7Z745 1585 aa25.09■■□□□ 1.61
SP140-213ENST00000543928 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
SP140-213ENST00000543928 SMARCA2P51531 1590 aa24.95■■□□□ 1.58
SP140-213ENST00000543928 PEG3Q9GZU2 1588 aa24.92■■□□□ 1.58
SP140-213ENST00000543928 RSF1Q96T23 1441 aaPredicted RBP24.91■■□□□ 1.58
SP140-213ENST00000543928 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
SP140-213ENST00000543928 WIZO95785 1651 aa24.83■■□□□ 1.57
SP140-213ENST00000543928 HMGXB3Q12766 1538 aa24.81■■□□□ 1.56
SP140-213ENST00000543928 BAZ1BQ9UIG0 1483 aaKnown RBP24.79■■□□□ 1.56
SP140-213ENST00000543928 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
SP140-213ENST00000543928 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
SP140-213ENST00000543928 CCDC88BA6NC98 1476 aa24.3■■□□□ 1.48
SP140-213ENST00000543928 NESP48681 1621 aa24.24■■□□□ 1.47
SP140-213ENST00000543928 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
SP140-213ENST00000543928 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
SP140-213ENST00000543928 CFTRP13569 1480 aa24.12■■□□□ 1.45
SP140-213ENST00000543928 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
SP140-213ENST00000543928 ERCC6Q03468 1493 aa24.03■■□□□ 1.44
SP140-213ENST00000543928 KIF21AQ7Z4S6 1674 aa23.95■■□□□ 1.42
SP140-213ENST00000543928 PRDM2Q13029 1718 aa23.94■■□□□ 1.42
SP140-213ENST00000543928 FANCD2Q9BXW9 1451 aa23.93■■□□□ 1.42
SP140-213ENST00000543928 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
SP140-213ENST00000543928 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
SP140-213ENST00000543928 MRC2Q9UBG0 1479 aa23.77■■□□□ 1.4
SP140-213ENST00000543928 WDR62O43379 1518 aa23.68■■□□□ 1.38
SP140-213ENST00000543928 URB2Q14146 1524 aaKnown RBP23.67■■□□□ 1.38
SP140-213ENST00000543928 CUX2O14529 1486 aa23.63■■□□□ 1.37
SP140-213ENST00000543928 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
SP140-213ENST00000543928 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
SP140-213ENST00000543928 DNMBPQ6XZF7 1577 aa23.57■■□□□ 1.36
SP140-213ENST00000543928 CUX1P39880 1505 aa23.52■■□□□ 1.36
SP140-213ENST00000543928 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
SP140-213ENST00000543928 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
SP140-213ENST00000543928 POLA1P09884 1462 aaPredicted RBP23.4■■□□□ 1.34
SP140-213ENST00000543928 FGD5Q6ZNL6 1462 aa23.4■■□□□ 1.34
SP140-213ENST00000543928 TOP2BQ02880 1626 aa23.38■■□□□ 1.33
SP140-213ENST00000543928 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
SP140-213ENST00000543928 IFT140Q96RY7 1462 aa23.35■■□□□ 1.33
SP140-213ENST00000543928 SOGA1O94964 1423 aa23.32■■□□□ 1.32
SP140-213ENST00000543928 RAD54L2Q9Y4B4 1467 aa23.31■■□□□ 1.32
SP140-213ENST00000543928 TARBP1Q13395 1621 aaKnown RBP23.29■■□□□ 1.32
SP140-213ENST00000543928 ZNF608Q9ULD9 1512 aaPredicted RBP23.23■■□□□ 1.31
SP140-213ENST00000543928 ABCA10Q8WWZ4 1543 aa23.17■■□□□ 1.3
SP140-213ENST00000543928 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
SP140-213ENST00000543928 WDR97A6NE52 1622 aa23.16■■□□□ 1.3
SP140-213ENST00000543928 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
SP140-213ENST00000543928 AQRO60306 1485 aaKnown RBP eCLIP23.15■■□□□ 1.3
SP140-213ENST00000543928 EIF4G3O43432 1585 aaKnown RBP23.14■■□□□ 1.3
SP140-213ENST00000543928 GAPVD1Q14C86 1478 aa23.05■■□□□ 1.28
SP140-213ENST00000543928 ABCA5Q8WWZ7 1642 aa23.04■■□□□ 1.28
SP140-213ENST00000543928 GRIN2BQ13224 1484 aa23■■□□□ 1.27
SP140-213ENST00000543928 KIF27Q86VH2 1401 aa22.97■■□□□ 1.27
SP140-213ENST00000543928 PBRM1Q86U86 1689 aa22.97■■□□□ 1.27
SP140-213ENST00000543928 SNAPC4Q5SXM2 1469 aa22.93■■□□□ 1.26
SP140-213ENST00000543928 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
SP140-213ENST00000543928 ERICH3Q5RHP9 1530 aa22.89■■□□□ 1.26
SP140-213ENST00000543928 RUSC2Q8N2Y8 1516 aa22.87■■□□□ 1.25
SP140-213ENST00000543928 IGF1RP08069 1367 aa22.84■■□□□ 1.25
SP140-213ENST00000543928 FBLN2P98095 1184 aa22.83■■□□□ 1.25
SP140-213ENST00000543928 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
SP140-213ENST00000543928 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
SP140-213ENST00000543928 CHMP7Q8WUX9 453 aaPredicted RBP22.8■■□□□ 1.24
SP140-213ENST00000543928 CHD1O14646 1710 aa22.79■■□□□ 1.24
SP140-213ENST00000543928 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
SP140-213ENST00000543928 CUL7Q14999 1698 aa22.74■■□□□ 1.23
SP140-213ENST00000543928 OSCARQ8IYS5 282 aa22.73■■□□□ 1.23
SP140-213ENST00000543928 CARMIL1Q5VZK9 1371 aa22.71■■□□□ 1.23
SP140-213ENST00000543928 EEA1Q15075 1411 aa22.71■■□□□ 1.23
SP140-213ENST00000543928 GRIN2AQ12879 1464 aa22.71■■□□□ 1.23
SP140-213ENST00000543928 FAM9AQ8IZU1 332 aaPredicted RBP22.69■■□□□ 1.22
SP140-213ENST00000543928 CSRNP3Q8WYN3 585 aa22.66■■□□□ 1.22
SP140-213ENST00000543928 RAPGEF2Q9Y4G8 1499 aa22.6■■□□□ 1.21
SP140-213ENST00000543928 PRXQ9BXM0 1461 aa22.6■■□□□ 1.21
SP140-213ENST00000543928 NUP160Q12769 1436 aa22.59■■□□□ 1.21
SP140-213ENST00000543928 CEP170Q5SW79 1584 aa22.59■■□□□ 1.21
SP140-213ENST00000543928 DNAJC5Q9H3Z4 198 aa22.57■■□□□ 1.2
SP140-213ENST00000543928 CLASP1Q7Z460 1538 aa22.55■■□□□ 1.2
SP140-213ENST00000543928 KIF21BO75037 1637 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms