RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 NISCHQ9Y2I1 1504 aa8.61□□□□□ -1.03
CHD4-209ENST00000542717 ABCC9O60706 1549 aa8.59□□□□□ -1.03
CHD4-209ENST00000542717 DNAJC5BQ9UF47 199 aa8.53□□□□□ -1.04
CHD4-209ENST00000542717 DNAJC5Q9H3Z4 198 aa8.26□□□□□ -1.09
CHD4-209ENST00000542717 PABPN1Q86U42 306 aaKnown RBP eCLIP7.95□□□□□ -1.14
CHD4-209ENST00000542717 CCDC180Q9P1Z9 1646 aa7.93□□□□□ -1.14
CHD4-209ENST00000542717 RB1CC1Q8TDY2 1594 aa7.88□□□□□ -1.15
CHD4-209ENST00000542717 CECR2Q9BXF3 1484 aa7.79□□□□□ -1.16
CHD4-209ENST00000542717 TRIM41Q8WV44 630 aa7.78□□□□□ -1.16
CHD4-209ENST00000542717 DCAF8L2P0C7V8 631 aa7.72□□□□□ -1.17
CHD4-209ENST00000542717 CC2D2AQ9P2K1 1620 aa7.68□□□□□ -1.18
CHD4-209ENST00000542717 NACADO15069 1562 aa7.67□□□□□ -1.18
CHD4-209ENST00000542717 UNC13AQ9UPW8 1703 aa7.64□□□□□ -1.19
CHD4-209ENST00000542717 BICRAQ9NZM4 1560 aa7.62□□□□□ -1.19
CHD4-209ENST00000542717 CUX2O14529 1486 aa7.59□□□□□ -1.19
CHD4-209ENST00000542717 EIF4G1Q04637 1599 aaKnown RBP7.52□□□□□ -1.21
CHD4-209ENST00000542717 AEBP2Q6ZN18 517 aaPredicted RBP7.51□□□□□ -1.21
CHD4-209ENST00000542717 ERCC6Q03468 1493 aa7.49□□□□□ -1.21
CHD4-209ENST00000542717 SHROOM4Q9ULL8 1493 aa7.45□□□□□ -1.22
CHD4-209ENST00000542717 MYO15BQ96JP2 1530 aa7.32□□□□□ -1.24
CHD4-209ENST00000542717 SCRIBQ14160 1630 aa7.3□□□□□ -1.24
CHD4-209ENST00000542717 TRHP20396 242 aaPredicted RBP7.28□□□□□ -1.24
CHD4-209ENST00000542717 OSCARQ8IYS5 282 aa7.23□□□□□ -1.25
CHD4-209ENST00000542717 ILDR1Q86SU0 546 aaPredicted RBP7.22□□□□□ -1.25
CHD4-209ENST00000542717 NESP48681 1621 aa7.19□□□□□ -1.26
CHD4-209ENST00000542717 THOC2Q8NI27 1593 aaKnown RBP7.17□□□□□ -1.26
CHD4-209ENST00000542717 SMARCA2P51531 1590 aa7.16□□□□□ -1.26
CHD4-209ENST00000542717 BAZ1AQ9NRL2 1556 aaPredicted RBP7.15□□□□□ -1.27
CHD4-209ENST00000542717 CYB5RLQ6IPT4 315 aa7.13□□□□□ -1.27
CHD4-209ENST00000542717 RIMBP3CA6NJZ7 1639 aa7.12□□□□□ -1.27
CHD4-209ENST00000542717 RIMBP3BA6NNM3 1639 aa7.12□□□□□ -1.27
CHD4-209ENST00000542717 RIMBP3Q9UFD9 1639 aa7.12□□□□□ -1.27
CHD4-209ENST00000542717 NCAPD3P42695 1498 aa7.09□□□□□ -1.27
CHD4-209ENST00000542717 PDS5BQ9NTI5 1447 aa7.05□□□□□ -1.28
CHD4-209ENST00000542717 KIF21AQ7Z4S6 1674 aa7.05□□□□□ -1.28
CHD4-209ENST00000542717 ARHGEF11O15085 1522 aa7.05□□□□□ -1.28
CHD4-209ENST00000542717 DCAF1Q9Y4B6 1507 aa7.03□□□□□ -1.28
CHD4-209ENST00000542717 LAMC3Q9Y6N6 1575 aa7.03□□□□□ -1.28
CHD4-209ENST00000542717 ZCCHC6Q5VYS8 1495 aaKnown RBP7□□□□□ -1.29
CHD4-209ENST00000542717 MRC2Q9UBG0 1479 aa7□□□□□ -1.29
CHD4-209ENST00000542717 ATAD2BQ9ULI0 1458 aa7□□□□□ -1.29
CHD4-209ENST00000542717 WDR62O43379 1518 aa6.96□□□□□ -1.29
CHD4-209ENST00000542717 HMGXB3Q12766 1538 aa6.96□□□□□ -1.29
CHD4-209ENST00000542717 BAZ1BQ9UIG0 1483 aaKnown RBP6.94□□□□□ -1.3
CHD4-209ENST00000542717 ARAP1Q96P48 1450 aa6.93□□□□□ -1.3
CHD4-209ENST00000542717 CEP164Q9UPV0 1460 aa6.88□□□□□ -1.31
CHD4-209ENST00000542717 CADPSQ9ULU8 1353 aa6.88□□□□□ -1.31
CHD4-209ENST00000542717 FBLN2P98095 1184 aa6.86□□□□□ -1.31
CHD4-209ENST00000542717 LMTK3Q96Q04 1460 aa6.84□□□□□ -1.31
CHD4-209ENST00000542717 SMARCA4P51532 1647 aa6.83□□□□□ -1.32
CHD4-209ENST00000542717 FBXO41Q8TF61 875 aa6.82□□□□□ -1.32
CHD4-209ENST00000542717 RSF1Q96T23 1441 aaPredicted RBP6.82□□□□□ -1.32
CHD4-209ENST00000542717 FANCD2Q9BXW9 1451 aa6.81□□□□□ -1.32
CHD4-209ENST00000542717 KDM4FA0A1W2PPD8 638 aa6.81□□□□□ -1.32
CHD4-209ENST00000542717 SOCS7O14512 581 aa6.79□□□□□ -1.32
CHD4-209ENST00000542717 ZNF608Q9ULD9 1512 aaPredicted RBP6.79□□□□□ -1.32
CHD4-209ENST00000542717 URB2Q14146 1524 aaKnown RBP6.76□□□□□ -1.33
CHD4-209ENST00000542717 CHD1O14646 1710 aa6.76□□□□□ -1.33
CHD4-209ENST00000542717 ERCC6L2Q5T890 1561 aa6.74□□□□□ -1.33
CHD4-209ENST00000542717 IFT140Q96RY7 1462 aa6.74□□□□□ -1.33
CHD4-209ENST00000542717 ILDR2Q71H61 639 aa6.72□□□□□ -1.33
CHD4-209ENST00000542717 PEG3Q9GZU2 1588 aa6.72□□□□□ -1.33
CHD4-209ENST00000542717 DISP3Q9P2K9 1392 aa6.71□□□□□ -1.33
CHD4-209ENST00000542717 EIF4G3O43432 1585 aaKnown RBP6.7□□□□□ -1.34
CHD4-209ENST00000542717 HECW2Q9P2P5 1572 aa6.7□□□□□ -1.34
CHD4-209ENST00000542717 GAPVD1Q14C86 1478 aa6.69□□□□□ -1.34
CHD4-209ENST00000542717 AQRO60306 1485 aaKnown RBP eCLIP6.68□□□□□ -1.342e-12■■■□□ 16.7
CHD4-209ENST00000542717 CHMP7Q8WUX9 453 aaPredicted RBP6.68□□□□□ -1.34
CHD4-209ENST00000542717 SYNJ2O15056 1496 aa6.66□□□□□ -1.34
CHD4-209ENST00000542717 CFTRP13569 1480 aa6.66□□□□□ -1.34
CHD4-209ENST00000542717 FAM69CQ0P6D2 419 aa6.65□□□□□ -1.34
CHD4-209ENST00000542717 CLASP1Q7Z460 1538 aa6.65□□□□□ -1.35
CHD4-209ENST00000542717 SYNJ1O43426 1573 aa6.65□□□□□ -1.35
CHD4-209ENST00000542717 MROH2BQ7Z745 1585 aa6.64□□□□□ -1.35
CHD4-209ENST00000542717 KDM6BO15054 1643 aa6.63□□□□□ -1.35
CHD4-209ENST00000542717 ADGRL1O94910 1474 aa6.63□□□□□ -1.35
CHD4-209ENST00000542717 KIF13AQ9H1H9 1805 aa6.62□□□□□ -1.35
CHD4-209ENST00000542717 TOPBP1Q92547 1522 aa6.6□□□□□ -1.35
CHD4-209ENST00000542717 SNAPC4Q5SXM2 1469 aa6.59□□□□□ -1.36
CHD4-209ENST00000542717 NPM1P06748 294 aaKnown RBP eCLIP6.58□□□□□ -1.36
CHD4-209ENST00000542717 TDRD9Q8NDG6 1382 aaKnown RBP6.57□□□□□ -1.36
CHD4-209ENST00000542717 ABCC8Q09428 1581 aa6.56□□□□□ -1.36
CHD4-209ENST00000542717 TARBP1Q13395 1621 aaKnown RBP6.54□□□□□ -1.36
CHD4-209ENST00000542717 ABCC10Q5T3U5 1492 aa6.54□□□□□ -1.36
CHD4-209ENST00000542717 WIZO95785 1651 aa6.54□□□□□ -1.36
CHD4-209ENST00000542717 TSPOAP1O95153 1857 aa6.53□□□□□ -1.36
CHD4-209ENST00000542717 MAGI1Q96QZ7 1491 aaPredicted RBP6.53□□□□□ -1.36
CHD4-209ENST00000542717 DNMBPQ6XZF7 1577 aa6.52□□□□□ -1.37
CHD4-209ENST00000542717 SPATA31D1Q6ZQQ2 1576 aa6.52□□□□□ -1.37
CHD4-209ENST00000542717 RAD54L2Q9Y4B4 1467 aa6.51□□□□□ -1.37
CHD4-209ENST00000542717 PRDM2Q13029 1718 aa6.5□□□□□ -1.37
CHD4-209ENST00000542717 SOGA1O94964 1423 aa6.5□□□□□ -1.37
CHD4-209ENST00000542717 DIP2BQ9P265 1576 aa6.49□□□□□ -1.37
CHD4-209ENST00000542717 POLA1P09884 1462 aaPredicted RBP6.49□□□□□ -1.37
CHD4-209ENST00000542717 CERKQ8TCT0 537 aa6.49□□□□□ -1.37
CHD4-209ENST00000542717 GRIN2BQ13224 1484 aa6.48□□□□□ -1.37
CHD4-209ENST00000542717 CEP170Q5SW79 1584 aa6.47□□□□□ -1.37
CHD4-209ENST00000542717 TOP2BQ02880 1626 aa6.45□□□□□ -1.38
CHD4-209ENST00000542717 MAPKBP1O60336 1514 aa6.45□□□□□ -1.38
CHD4-209ENST00000542717 WDR97A6NE52 1622 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms