RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
VPS53-205ENST00000541903 CCDC180Q9P1Z9 1646 aa14.81□□□□□ -0.04
VPS53-205ENST00000541903 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
VPS53-205ENST00000541903 ABCC9O60706 1549 aa14.07□□□□□ -0.16
VPS53-205ENST00000541903 DCAF1Q9Y4B6 1507 aa14□□□□□ -0.17
VPS53-205ENST00000541903 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
VPS53-205ENST00000541903 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
VPS53-205ENST00000541903 NACADO15069 1562 aa13.82□□□□□ -0.2
VPS53-205ENST00000541903 RB1CC1Q8TDY2 1594 aa13.73□□□□□ -0.21
VPS53-205ENST00000541903 SHROOM4Q9ULL8 1493 aa13.7□□□□□ -0.22
VPS53-205ENST00000541903 SCRIBQ14160 1630 aa13.59□□□□□ -0.23
VPS53-205ENST00000541903 UNC13AQ9UPW8 1703 aa13.34□□□□□ -0.27
VPS53-205ENST00000541903 BICRAQ9NZM4 1560 aa13.26□□□□□ -0.29
VPS53-205ENST00000541903 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS53-205ENST00000541903 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
VPS53-205ENST00000541903 CECR2Q9BXF3 1484 aa13.12□□□□□ -0.31
VPS53-205ENST00000541903 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.32
VPS53-205ENST00000541903 RSF1Q96T23 1441 aaPredicted RBP13.06□□□□□ -0.32
VPS53-205ENST00000541903 MROH2BQ7Z745 1585 aa13.04□□□□□ -0.32
VPS53-205ENST00000541903 SMARCA4P51532 1647 aa13.02□□□□□ -0.33
VPS53-205ENST00000541903 WIZO95785 1651 aa12.9□□□□□ -0.34
VPS53-205ENST00000541903 EIF4G1Q04637 1599 aaKnown RBP12.9□□□□□ -0.35
VPS53-205ENST00000541903 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
VPS53-205ENST00000541903 SMARCA2P51531 1590 aa12.85□□□□□ -0.35
VPS53-205ENST00000541903 TOP2AP11388 1531 aaKnown RBP12.83□□□□□ -0.35
VPS53-205ENST00000541903 ATAD2BQ9ULI0 1458 aa12.83□□□□□ -0.36
VPS53-205ENST00000541903 BAZ1BQ9UIG0 1483 aaKnown RBP12.78□□□□□ -0.36
VPS53-205ENST00000541903 NCAPD3P42695 1498 aa12.74□□□□□ -0.37
VPS53-205ENST00000541903 HMGXB3Q12766 1538 aa12.73□□□□□ -0.37
VPS53-205ENST00000541903 CC2D2AQ9P2K1 1620 aa12.73□□□□□ -0.37
VPS53-205ENST00000541903 CCDC88BA6NC98 1476 aa12.66□□□□□ -0.38
VPS53-205ENST00000541903 CHIC1Q5VXU3 224 aa12.51□□□□□ -0.41
VPS53-205ENST00000541903 CFTRP13569 1480 aa12.43□□□□□ -0.42
VPS53-205ENST00000541903 DNAJC5BQ9UF47 199 aa12.43□□□□□ -0.42
VPS53-205ENST00000541903 CADPSQ9ULU8 1353 aa12.42□□□□□ -0.42
VPS53-205ENST00000541903 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
VPS53-205ENST00000541903 ABCC8Q09428 1581 aa12.35□□□□□ -0.43
VPS53-205ENST00000541903 WRNQ14191 1432 aaPredicted RBP eCLIP12.33□□□□□ -0.44
VPS53-205ENST00000541903 LAMC3Q9Y6N6 1575 aa12.33□□□□□ -0.44
VPS53-205ENST00000541903 PRDM2Q13029 1718 aa12.33□□□□□ -0.44
VPS53-205ENST00000541903 NESP48681 1621 aa12.29□□□□□ -0.44
VPS53-205ENST00000541903 FANCD2Q9BXW9 1451 aa12.27□□□□□ -0.44
VPS53-205ENST00000541903 PDS5BQ9NTI5 1447 aa12.26□□□□□ -0.45
VPS53-205ENST00000541903 SYNJ1O43426 1573 aa12.26□□□□□ -0.45
VPS53-205ENST00000541903 CEP164Q9UPV0 1460 aa12.23□□□□□ -0.45
VPS53-205ENST00000541903 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
VPS53-205ENST00000541903 BIVM-ERCC5R4GMW8 1640 aa12.21□□□□□ -0.46
VPS53-205ENST00000541903 CUX1P39880 1505 aa12.21□□□□□ -0.46
VPS53-205ENST00000541903 DNMBPQ6XZF7 1577 aa12.16□□□□□ -0.46
VPS53-205ENST00000541903 KIF21AQ7Z4S6 1674 aa12.13□□□□□ -0.47
VPS53-205ENST00000541903 EEA1Q15075 1411 aa12.13□□□□□ -0.47
VPS53-205ENST00000541903 TOPBP1Q92547 1522 aa12.13□□□□□ -0.47
VPS53-205ENST00000541903 FAM9AQ8IZU1 332 aaPredicted RBP12.13□□□□□ -0.47
VPS53-205ENST00000541903 ERCC6Q03468 1493 aa12.12□□□□□ -0.47
VPS53-205ENST00000541903 URB2Q14146 1524 aaKnown RBP12.11□□□□□ -0.47
VPS53-205ENST00000541903 FGD5Q6ZNL6 1462 aa12.11□□□□□ -0.47
VPS53-205ENST00000541903 MRC2Q9UBG0 1479 aa12.11□□□□□ -0.47
VPS53-205ENST00000541903 SOGA1O94964 1423 aa12.11□□□□□ -0.47
VPS53-205ENST00000541903 POLA1P09884 1462 aaPredicted RBP12.06□□□□□ -0.48
VPS53-205ENST00000541903 RUSC2Q8N2Y8 1516 aa12.05□□□□□ -0.48
VPS53-205ENST00000541903 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
VPS53-205ENST00000541903 WDR62O43379 1518 aa12.04□□□□□ -0.48
VPS53-205ENST00000541903 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
VPS53-205ENST00000541903 CUX2O14529 1486 aa12.02□□□□□ -0.48
VPS53-205ENST00000541903 ABCA10Q8WWZ4 1543 aa12.01□□□□□ -0.49
VPS53-205ENST00000541903 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
VPS53-205ENST00000541903 THOC2Q8NI27 1593 aaKnown RBP12□□□□□ -0.49
VPS53-205ENST00000541903 LOC105371045A0A1W2PR82 267 aa11.99□□□□□ -0.49
VPS53-205ENST00000541903 GOLGA3Q08378 1498 aa11.95□□□□□ -0.5
VPS53-205ENST00000541903 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
VPS53-205ENST00000541903 KIF21BO75037 1637 aa11.95□□□□□ -0.5
VPS53-205ENST00000541903 WDR97A6NE52 1622 aa11.94□□□□□ -0.5
VPS53-205ENST00000541903 EHMT2Q96KQ7 1210 aa11.94□□□□□ -0.5
VPS53-205ENST00000541903 TARBP1Q13395 1621 aaKnown RBP11.93□□□□□ -0.5
VPS53-205ENST00000541903 PRXQ9BXM0 1461 aa11.91□□□□□ -0.5
VPS53-205ENST00000541903 ABCA5Q8WWZ7 1642 aa11.9□□□□□ -0.5
VPS53-205ENST00000541903 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
VPS53-205ENST00000541903 IGF1RP08069 1367 aa11.9□□□□□ -0.5
VPS53-205ENST00000541903 TDRD9Q8NDG6 1382 aaKnown RBP11.9□□□□□ -0.5
VPS53-205ENST00000541903 GAPVD1Q14C86 1478 aa11.89□□□□□ -0.51
VPS53-205ENST00000541903 RAPGEF2Q9Y4G8 1499 aa11.88□□□□□ -0.51
VPS53-205ENST00000541903 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
VPS53-205ENST00000541903 TNIKQ9UKE5 1360 aa11.87□□□□□ -0.51
VPS53-205ENST00000541903 CARMIL1Q5VZK9 1371 aa11.86□□□□□ -0.51
VPS53-205ENST00000541903 CUL7Q14999 1698 aa11.85□□□□□ -0.51
VPS53-205ENST00000541903 ZNF608Q9ULD9 1512 aaPredicted RBP11.84□□□□□ -0.51
VPS53-205ENST00000541903 AQRO60306 1485 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS53-205ENST00000541903 GRIN2BQ13224 1484 aa11.83□□□□□ -0.52
VPS53-205ENST00000541903 EIF4G3O43432 1585 aaKnown RBP11.82□□□□□ -0.52
VPS53-205ENST00000541903 PBRM1Q86U86 1689 aa11.81□□□□□ -0.52
VPS53-205ENST00000541903 CEP162Q5TB80 1403 aa11.8□□□□□ -0.52
VPS53-205ENST00000541903 FHAD1B1AJZ9 1412 aa11.78□□□□□ -0.52
VPS53-205ENST00000541903 ADAMTS12P58397 1594 aa11.78□□□□□ -0.52
VPS53-205ENST00000541903 SNAPC4Q5SXM2 1469 aa11.76□□□□□ -0.53
VPS53-205ENST00000541903 MAGI1Q96QZ7 1491 aaPredicted RBP11.75□□□□□ -0.53
VPS53-205ENST00000541903 CLIP1P30622 1438 aa11.74□□□□□ -0.53
VPS53-205ENST00000541903 SYNJ2O15056 1496 aa11.7□□□□□ -0.54
VPS53-205ENST00000541903 RANGAP1P46060 587 aaPredicted RBP11.69□□□□□ -0.54
VPS53-205ENST00000541903 DNAJC5Q9H3Z4 198 aa11.68□□□□□ -0.54
VPS53-205ENST00000541903 GRIN2AQ12879 1464 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms