RNA–Protein interactions for RNA: ENST00000537619.6

PTPRR-205, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 1 (best)

Gene PTPRR, Length 1,927 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-205ENST00000537619 NISCHQ9Y2I1 1504 aa20.25■□□□□ 0.83
PTPRR-205ENST00000537619 CCDC180Q9P1Z9 1646 aa17.37■□□□□ 0.37
PTPRR-205ENST00000537619 ZCCHC6Q5VYS8 1495 aaKnown RBP17.11■□□□□ 0.33
PTPRR-205ENST00000537619 SHROOM4Q9ULL8 1493 aa16.95■□□□□ 0.3
PTPRR-205ENST00000537619 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
PTPRR-205ENST00000537619 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
PTPRR-205ENST00000537619 SUPT5HO00267 1087 aaKnown RBP16.45■□□□□ 0.22
PTPRR-205ENST00000537619 MYO15BQ96JP2 1530 aa16.28■□□□□ 0.2
PTPRR-205ENST00000537619 ABCC9O60706 1549 aa16.21■□□□□ 0.19
PTPRR-205ENST00000537619 SCRIBQ14160 1630 aa16.18■□□□□ 0.18
PTPRR-205ENST00000537619 NACADO15069 1562 aa16.09■□□□□ 0.17
PTPRR-205ENST00000537619 CHIC1Q5VXU3 224 aa15.96■□□□□ 0.14
PTPRR-205ENST00000537619 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
PTPRR-205ENST00000537619 RB1CC1Q8TDY2 1594 aa15.86■□□□□ 0.13
PTPRR-205ENST00000537619 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
PTPRR-205ENST00000537619 MROH2BQ7Z745 1585 aa15.73■□□□□ 0.11
PTPRR-205ENST00000537619 UNC13AQ9UPW8 1703 aa15.66■□□□□ 0.1
PTPRR-205ENST00000537619 WIZO95785 1651 aa15.61■□□□□ 0.09
PTPRR-205ENST00000537619 BAZ1AQ9NRL2 1556 aaPredicted RBP15.55■□□□□ 0.08
PTPRR-205ENST00000537619 BICRAQ9NZM4 1560 aa15.51■□□□□ 0.07
PTPRR-205ENST00000537619 SMARCA4P51532 1647 aa15.49■□□□□ 0.07
PTPRR-205ENST00000537619 LOC105371045A0A1W2PR82 267 aa15.43■□□□□ 0.06
PTPRR-205ENST00000537619 PABPN1Q86U42 306 aaKnown RBP eCLIP15.41■□□□□ 0.06
PTPRR-205ENST00000537619 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
PTPRR-205ENST00000537619 EIF4G1Q04637 1599 aaKnown RBP15.39■□□□□ 0.05
PTPRR-205ENST00000537619 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
PTPRR-205ENST00000537619 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
PTPRR-205ENST00000537619 CCDC88BA6NC98 1476 aa15.29■□□□□ 0.04
PTPRR-205ENST00000537619 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
PTPRR-205ENST00000537619 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
PTPRR-205ENST00000537619 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
PTPRR-205ENST00000537619 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
PTPRR-205ENST00000537619 PCGF6Q9BYE7 350 aa15.1■□□□□ 0.01
PTPRR-205ENST00000537619 BAZ1BQ9UIG0 1483 aaKnown RBP15.05■□□□□ -0
PTPRR-205ENST00000537619 EHMT2Q96KQ7 1210 aa15.04■□□□□ -0
PTPRR-205ENST00000537619 HRCP23327 699 aa14.98□□□□□ -0.01
PTPRR-205ENST00000537619 SOGA1O94964 1423 aa14.95□□□□□ -0.02
PTPRR-205ENST00000537619 WRNQ14191 1432 aaPredicted RBP eCLIP14.92□□□□□ -0.02
PTPRR-205ENST00000537619 TRIM26Q12899 539 aaPredicted RBP14.91□□□□□ -0.02
PTPRR-205ENST00000537619 RUSC2Q8N2Y8 1516 aa14.91□□□□□ -0.02
PTPRR-205ENST00000537619 SYNJ1O43426 1573 aa14.91□□□□□ -0.02
PTPRR-205ENST00000537619 NCAPD3P42695 1498 aa14.89□□□□□ -0.03
PTPRR-205ENST00000537619 HMGXB3Q12766 1538 aa14.89□□□□□ -0.03
PTPRR-205ENST00000537619 EEA1Q15075 1411 aa14.83□□□□□ -0.03
PTPRR-205ENST00000537619 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
PTPRR-205ENST00000537619 TNIKQ9UKE5 1360 aa14.76□□□□□ -0.05
PTPRR-205ENST00000537619 CEP162Q5TB80 1403 aa14.75□□□□□ -0.05
PTPRR-205ENST00000537619 TOP2BQ02880 1626 aa14.74□□□□□ -0.05
PTPRR-205ENST00000537619 BIVM-ERCC5R4GMW8 1640 aa14.72□□□□□ -0.05
PTPRR-205ENST00000537619 GOLGA3Q08378 1498 aa14.71□□□□□ -0.05
PTPRR-205ENST00000537619 PPARGC1BQ86YN6 1023 aaKnown RBP14.7□□□□□ -0.06
PTPRR-205ENST00000537619 CFTRP13569 1480 aa14.7□□□□□ -0.06
PTPRR-205ENST00000537619 KIF21BO75037 1637 aa14.69□□□□□ -0.06
PTPRR-205ENST00000537619 CUX1P39880 1505 aa14.67□□□□□ -0.06
PTPRR-205ENST00000537619 CEP164Q9UPV0 1460 aa14.66□□□□□ -0.06
PTPRR-205ENST00000537619 CC2D2AQ9P2K1 1620 aa14.64□□□□□ -0.07
PTPRR-205ENST00000537619 UBTFP17480 764 aaKnown RBP14.64□□□□□ -0.07
PTPRR-205ENST00000537619 RAPGEF2Q9Y4G8 1499 aa14.61□□□□□ -0.07
PTPRR-205ENST00000537619 PRDM2Q13029 1718 aa14.58□□□□□ -0.07
PTPRR-205ENST00000537619 CADPSQ9ULU8 1353 aa14.55□□□□□ -0.08
PTPRR-205ENST00000537619 PRXQ9BXM0 1461 aa14.53□□□□□ -0.08
PTPRR-205ENST00000537619 CLIP1P30622 1438 aa14.52□□□□□ -0.09
PTPRR-205ENST00000537619 TTBK1Q5TCY1 1321 aaPredicted RBP14.49□□□□□ -0.09
PTPRR-205ENST00000537619 ERICH3Q5RHP9 1530 aa14.49□□□□□ -0.09
PTPRR-205ENST00000537619 KIF27Q86VH2 1401 aa14.47□□□□□ -0.09
PTPRR-205ENST00000537619 VPS8Q8N3P4 1428 aa14.45□□□□□ -0.1
PTPRR-205ENST00000537619 ZEB1P37275 1124 aaPredicted RBP14.43□□□□□ -0.1
PTPRR-205ENST00000537619 FGD5Q6ZNL6 1462 aa14.42□□□□□ -0.1
PTPRR-205ENST00000537619 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
PTPRR-205ENST00000537619 NESP48681 1621 aa14.41□□□□□ -0.1
PTPRR-205ENST00000537619 CUX2O14529 1486 aa14.4□□□□□ -0.1
PTPRR-205ENST00000537619 ARAP1Q96P48 1450 aa14.39□□□□□ -0.11
PTPRR-205ENST00000537619 RANGAP1P46060 587 aaPredicted RBP14.39□□□□□ -0.11
PTPRR-205ENST00000537619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.36□□□□□ -0.11
PTPRR-205ENST00000537619 IGF1RP08069 1367 aa14.36□□□□□ -0.11
PTPRR-205ENST00000537619 DNAJC5BQ9UF47 199 aa14.34□□□□□ -0.11
PTPRR-205ENST00000537619 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
PTPRR-205ENST00000537619 TOPBP1Q92547 1522 aa14.32□□□□□ -0.12
PTPRR-205ENST00000537619 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
PTPRR-205ENST00000537619 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
PTPRR-205ENST00000537619 ARHGAP35Q9NRY4 1499 aa14.29□□□□□ -0.12
PTPRR-205ENST00000537619 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
PTPRR-205ENST00000537619 CARMIL1Q5VZK9 1371 aa14.27□□□□□ -0.12
PTPRR-205ENST00000537619 URB2Q14146 1524 aaKnown RBP14.26□□□□□ -0.13
PTPRR-205ENST00000537619 ABCA10Q8WWZ4 1543 aa14.26□□□□□ -0.13
PTPRR-205ENST00000537619 CCER1Q8TC90 406 aaPredicted RBP14.26□□□□□ -0.13
PTPRR-205ENST00000537619 WDR97A6NE52 1622 aa14.21□□□□□ -0.13
PTPRR-205ENST00000537619 APLP2Q06481 763 aa14.21□□□□□ -0.14
PTPRR-205ENST00000537619 KANK4Q5T7N3 995 aaPredicted RBP14.2□□□□□ -0.14
PTPRR-205ENST00000537619 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
PTPRR-205ENST00000537619 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
PTPRR-205ENST00000537619 PDS5BQ9NTI5 1447 aa14.16□□□□□ -0.14
PTPRR-205ENST00000537619 ABCA5Q8WWZ7 1642 aa14.14□□□□□ -0.15
PTPRR-205ENST00000537619 CUL7Q14999 1698 aa14.13□□□□□ -0.15
PTPRR-205ENST00000537619 TDRD9Q8NDG6 1382 aaKnown RBP14.1□□□□□ -0.15
PTPRR-205ENST00000537619 RRBP1Q9P2E9 1410 aaKnown RBP14.09□□□□□ -0.15
PTPRR-205ENST00000537619 TIAM1Q13009 1591 aa14.08□□□□□ -0.16
PTPRR-205ENST00000537619 TARBP1Q13395 1621 aaKnown RBP14.07□□□□□ -0.16
PTPRR-205ENST00000537619 GAPVD1Q14C86 1478 aa14.07□□□□□ -0.16
PTPRR-205ENST00000537619 PCF11O94913 1555 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms