RNA–Protein interactions for RNA: ENST00000534903.1

NPIPB3-206, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-206ENST00000534903 AEBP2Q6ZN18 517 aaPredicted RBP13.7□□□□□ -0.22
NPIPB3-206ENST00000534903 CHIC1Q5VXU3 224 aa12.68□□□□□ -0.38
NPIPB3-206ENST00000534903 NISCHQ9Y2I1 1504 aa12.33□□□□□ -0.44
NPIPB3-206ENST00000534903 SENP3Q9H4L4 574 aaPredicted RBP11.66□□□□□ -0.54
NPIPB3-206ENST00000534903 PHF23Q9BUL5 403 aaPredicted RBP11.49□□□□□ -0.57
NPIPB3-206ENST00000534903 ABCC9O60706 1549 aa11.25□□□□□ -0.61
NPIPB3-206ENST00000534903 FOXD1Q16676 465 aa10.98□□□□□ -0.65
NPIPB3-206ENST00000534903 POTEDQ86YR6 584 aa10.98□□□□□ -0.65
NPIPB3-206ENST00000534903 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
NPIPB3-206ENST00000534903 CCDC180Q9P1Z9 1646 aa10.86□□□□□ -0.67
NPIPB3-206ENST00000534903 RB1CC1Q8TDY2 1594 aa10.56□□□□□ -0.72
NPIPB3-206ENST00000534903 PABPN1Q86U42 306 aaKnown RBP eCLIP10.43□□□□□ -0.74
NPIPB3-206ENST00000534903 NACADO15069 1562 aa10.42□□□□□ -0.74
NPIPB3-206ENST00000534903 ZCCHC6Q5VYS8 1495 aaKnown RBP10.41□□□□□ -0.74
NPIPB3-206ENST00000534903 DNAJC5Q9H3Z4 198 aa10.4□□□□□ -0.74
NPIPB3-206ENST00000534903 MSH5O43196 834 aa10.38□□□□□ -0.75
NPIPB3-206ENST00000534903 DCAF1Q9Y4B6 1507 aa10.27□□□□□ -0.77
NPIPB3-206ENST00000534903 BICRAQ9NZM4 1560 aa10.24□□□□□ -0.77
NPIPB3-206ENST00000534903 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
NPIPB3-206ENST00000534903 MYO15BQ96JP2 1530 aa10.22□□□□□ -0.77
NPIPB3-206ENST00000534903 CECR2Q9BXF3 1484 aa10.21□□□□□ -0.78
NPIPB3-206ENST00000534903 SHROOM4Q9ULL8 1493 aa10.18□□□□□ -0.78
NPIPB3-206ENST00000534903 UNC13AQ9UPW8 1703 aa10.17□□□□□ -0.78
NPIPB3-206ENST00000534903 CC2D2AQ9P2K1 1620 aa10.12□□□□□ -0.79
NPIPB3-206ENST00000534903 PIAS4Q8N2W9 510 aaPredicted RBP10.09□□□□□ -0.79
NPIPB3-206ENST00000534903 EIF4G1Q04637 1599 aaKnown RBP10.03□□□□□ -0.8
NPIPB3-206ENST00000534903 PPP6R1Q9UPN7 881 aa9.96□□□□□ -0.82
NPIPB3-206ENST00000534903 CUX2O14529 1486 aa9.93□□□□□ -0.82
NPIPB3-206ENST00000534903 SCRIBQ14160 1630 aa9.86□□□□□ -0.83
NPIPB3-206ENST00000534903 ADRA2BP18089 450 aa9.85□□□□□ -0.83
NPIPB3-206ENST00000534903 ERCC6Q03468 1493 aa9.76□□□□□ -0.85
NPIPB3-206ENST00000534903 PLPPR3Q6T4P5 718 aa9.75□□□□□ -0.85
NPIPB3-206ENST00000534903 TRIM41Q8WV44 630 aa9.69□□□□□ -0.86
NPIPB3-206ENST00000534903 NCAPD3P42695 1498 aa9.67□□□□□ -0.86
NPIPB3-206ENST00000534903 SUPT5HO00267 1087 aaKnown RBP9.59□□□□□ -0.87
NPIPB3-206ENST00000534903 RSF1Q96T23 1441 aaPredicted RBP9.55□□□□□ -0.88
NPIPB3-206ENST00000534903 BAZ1AQ9NRL2 1556 aaPredicted RBP9.54□□□□□ -0.88
NPIPB3-206ENST00000534903 ATAD2BQ9ULI0 1458 aa9.53□□□□□ -0.88
NPIPB3-206ENST00000534903 NESP48681 1621 aa9.53□□□□□ -0.88
NPIPB3-206ENST00000534903 THOC2Q8NI27 1593 aaKnown RBP9.51□□□□□ -0.89
NPIPB3-206ENST00000534903 HMGXB3Q12766 1538 aa9.51□□□□□ -0.89
NPIPB3-206ENST00000534903 MROH2BQ7Z745 1585 aa9.5□□□□□ -0.89
NPIPB3-206ENST00000534903 SMARCA4P51532 1647 aa9.49□□□□□ -0.89
NPIPB3-206ENST00000534903 SMARCA2P51531 1590 aa9.48□□□□□ -0.89
NPIPB3-206ENST00000534903 PDS5BQ9NTI5 1447 aa9.47□□□□□ -0.89
NPIPB3-206ENST00000534903 LAMC3Q9Y6N6 1575 aa9.46□□□□□ -0.9
NPIPB3-206ENST00000534903 OSCARQ8IYS5 282 aa9.44□□□□□ -0.9
NPIPB3-206ENST00000534903 WIZO95785 1651 aa9.43□□□□□ -0.9
NPIPB3-206ENST00000534903 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
NPIPB3-206ENST00000534903 BAZ1BQ9UIG0 1483 aaKnown RBP9.4□□□□□ -0.9
NPIPB3-206ENST00000534903 TOP2AP11388 1531 aaKnown RBP9.39□□□□□ -0.91
NPIPB3-206ENST00000534903 MRC2Q9UBG0 1479 aa9.36□□□□□ -0.91
NPIPB3-206ENST00000534903 CADPSQ9ULU8 1353 aa9.35□□□□□ -0.91
NPIPB3-206ENST00000534903 WDR62O43379 1518 aa9.34□□□□□ -0.91
NPIPB3-206ENST00000534903 KIF21AQ7Z4S6 1674 aa9.32□□□□□ -0.92
NPIPB3-206ENST00000534903 CEP164Q9UPV0 1460 aa9.24□□□□□ -0.93
NPIPB3-206ENST00000534903 RIMBP3CA6NJZ7 1639 aa9.23□□□□□ -0.93
NPIPB3-206ENST00000534903 RIMBP3BA6NNM3 1639 aa9.23□□□□□ -0.93
NPIPB3-206ENST00000534903 RIMBP3Q9UFD9 1639 aa9.23□□□□□ -0.93
NPIPB3-206ENST00000534903 CCDC88BA6NC98 1476 aa9.22□□□□□ -0.93
NPIPB3-206ENST00000534903 ARHGEF11O15085 1522 aa9.21□□□□□ -0.93
NPIPB3-206ENST00000534903 TRHP20396 242 aaPredicted RBP9.21□□□□□ -0.94
NPIPB3-206ENST00000534903 MAPK8IP2Q13387 824 aaPredicted RBP9.21□□□□□ -0.94
NPIPB3-206ENST00000534903 DMRT2Q9Y5R5 561 aa9.2□□□□□ -0.94
NPIPB3-206ENST00000534903 FANCD2Q9BXW9 1451 aa9.2□□□□□ -0.94
NPIPB3-206ENST00000534903 CACNB1Q02641 598 aaPredicted RBP9.19□□□□□ -0.94
NPIPB3-206ENST00000534903 CYB5RLQ6IPT4 315 aa9.19□□□□□ -0.94
NPIPB3-206ENST00000534903 CFTRP13569 1480 aa9.15□□□□□ -0.95
NPIPB3-206ENST00000534903 URB2Q14146 1524 aaKnown RBP9.12□□□□□ -0.95
NPIPB3-206ENST00000534903 IFT140Q96RY7 1462 aa9.1□□□□□ -0.95
NPIPB3-206ENST00000534903 ARAP1Q96P48 1450 aa9.09□□□□□ -0.95
NPIPB3-206ENST00000534903 ZNF608Q9ULD9 1512 aaPredicted RBP9.06□□□□□ -0.96
NPIPB3-206ENST00000534903 PRDM2Q13029 1718 aa9.06□□□□□ -0.96
NPIPB3-206ENST00000534903 ABCC8Q09428 1581 aa9.04□□□□□ -0.96
NPIPB3-206ENST00000534903 WRNQ14191 1432 aaPredicted RBP eCLIP9.01□□□□□ -0.97
NPIPB3-206ENST00000534903 FBLN2P98095 1184 aa8.98□□□□□ -0.97
NPIPB3-206ENST00000534903 SYNJ1O43426 1573 aa8.98□□□□□ -0.97
NPIPB3-206ENST00000534903 BIVM-ERCC5R4GMW8 1640 aa8.98□□□□□ -0.97
NPIPB3-206ENST00000534903 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
NPIPB3-206ENST00000534903 TOPBP1Q92547 1522 aa8.96□□□□□ -0.97
NPIPB3-206ENST00000534903 EEA1Q15075 1411 aa8.96□□□□□ -0.98
NPIPB3-206ENST00000534903 AQRO60306 1485 aaKnown RBP eCLIP8.96□□□□□ -0.98
NPIPB3-206ENST00000534903 EIF4G3O43432 1585 aaKnown RBP8.95□□□□□ -0.98
NPIPB3-206ENST00000534903 SCAF1Q9H7N4 1312 aaKnown RBP8.93□□□□□ -0.98
NPIPB3-206ENST00000534903 CHD1O14646 1710 aa8.91□□□□□ -0.98
NPIPB3-206ENST00000534903 CLASP1Q7Z460 1538 aa8.9□□□□□ -0.98
NPIPB3-206ENST00000534903 ILDR1Q86SU0 546 aaPredicted RBP8.9□□□□□ -0.98
NPIPB3-206ENST00000534903 CUX1P39880 1505 aa8.9□□□□□ -0.99
NPIPB3-206ENST00000534903 CHMP7Q8WUX9 453 aaPredicted RBP8.89□□□□□ -0.99
NPIPB3-206ENST00000534903 TARBP1Q13395 1621 aaKnown RBP8.88□□□□□ -0.99
NPIPB3-206ENST00000534903 DNMBPQ6XZF7 1577 aa8.88□□□□□ -0.99
NPIPB3-206ENST00000534903 RNF39Q9H2S5 420 aa8.87□□□□□ -0.99
NPIPB3-206ENST00000534903 GAPVD1Q14C86 1478 aa8.86□□□□□ -0.99
NPIPB3-206ENST00000534903 SOGA1O94964 1423 aa8.86□□□□□ -0.99
NPIPB3-206ENST00000534903 POLA1P09884 1462 aaPredicted RBP8.85□□□□□ -0.99
NPIPB3-206ENST00000534903 TDRD9Q8NDG6 1382 aaKnown RBP8.85□□□□□ -0.99
NPIPB3-206ENST00000534903 MAGI1Q96QZ7 1491 aaPredicted RBP8.84□□□□□ -0.99
NPIPB3-206ENST00000534903 KIF21BO75037 1637 aa8.84□□□□□ -0.99
NPIPB3-206ENST00000534903 WDR97A6NE52 1622 aa8.83□□□□□ -1
NPIPB3-206ENST00000534903 SNAPC4Q5SXM2 1469 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms