RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 AEBP2Q6ZN18 517 aaPredicted RBP19.53■□□□□ 0.72
CD44-237ENST00000534082 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
CD44-237ENST00000534082 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
CD44-237ENST00000534082 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
CD44-237ENST00000534082 PHF23Q9BUL5 403 aaPredicted RBP16.46■□□□□ 0.23
CD44-237ENST00000534082 ABCC9O60706 1549 aa15.99■□□□□ 0.15
CD44-237ENST00000534082 FOXD1Q16676 465 aa15.49■□□□□ 0.07
CD44-237ENST00000534082 CCDC180Q9P1Z9 1646 aa15.46■□□□□ 0.07
CD44-237ENST00000534082 DNAJC5BQ9UF47 199 aa15.44■□□□□ 0.06
CD44-237ENST00000534082 PLPPR3Q6T4P5 718 aa15.03■□□□□ -0
CD44-237ENST00000534082 RB1CC1Q8TDY2 1594 aa14.98□□□□□ -0.01
CD44-237ENST00000534082 PABPN1Q86U42 306 aaKnown RBP eCLIP14.76□□□□□ -0.05
CD44-237ENST00000534082 NACADO15069 1562 aa14.73□□□□□ -0.05
CD44-237ENST00000534082 ADRA2BP18089 450 aa14.62□□□□□ -0.07
CD44-237ENST00000534082 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
CD44-237ENST00000534082 PPP6R1Q9UPN7 881 aa14.61□□□□□ -0.07
CD44-237ENST00000534082 DNAJC5Q9H3Z4 198 aa14.58□□□□□ -0.08
CD44-237ENST00000534082 BICRAQ9NZM4 1560 aa14.56□□□□□ -0.08
CD44-237ENST00000534082 PIAS4Q8N2W9 510 aaPredicted RBP14.56□□□□□ -0.08
CD44-237ENST00000534082 DCAF8L2P0C7V8 631 aa14.47□□□□□ -0.09
CD44-237ENST00000534082 CECR2Q9BXF3 1484 aa14.46□□□□□ -0.09
CD44-237ENST00000534082 MSH5O43196 834 aa14.43□□□□□ -0.1
CD44-237ENST00000534082 CC2D2AQ9P2K1 1620 aa14.41□□□□□ -0.1
CD44-237ENST00000534082 MYO15BQ96JP2 1530 aa14.35□□□□□ -0.11
CD44-237ENST00000534082 SHROOM4Q9ULL8 1493 aa14.33□□□□□ -0.12
CD44-237ENST00000534082 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
CD44-237ENST00000534082 SCRIBQ14160 1630 aa14.06□□□□□ -0.16
CD44-237ENST00000534082 CUX2O14529 1486 aa14.01□□□□□ -0.17
CD44-237ENST00000534082 DCAF1Q9Y4B6 1507 aa13.96□□□□□ -0.17
CD44-237ENST00000534082 ZCCHC6Q5VYS8 1495 aaKnown RBP13.95□□□□□ -0.18
CD44-237ENST00000534082 ERCC6Q03468 1493 aa13.85□□□□□ -0.19
CD44-237ENST00000534082 POTEDQ86YR6 584 aa13.83□□□□□ -0.2
CD44-237ENST00000534082 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
CD44-237ENST00000534082 NCAPD3P42695 1498 aa13.6□□□□□ -0.23
CD44-237ENST00000534082 THOC2Q8NI27 1593 aaKnown RBP13.58□□□□□ -0.24
CD44-237ENST00000534082 NESP48681 1621 aa13.57□□□□□ -0.24
CD44-237ENST00000534082 ATAD2BQ9ULI0 1458 aa13.48□□□□□ -0.25
CD44-237ENST00000534082 HMGXB3Q12766 1538 aa13.48□□□□□ -0.25
CD44-237ENST00000534082 SMARCA2P51531 1590 aa13.47□□□□□ -0.25
CD44-237ENST00000534082 LAMC3Q9Y6N6 1575 aa13.4□□□□□ -0.26
CD44-237ENST00000534082 KIF21AQ7Z4S6 1674 aa13.38□□□□□ -0.27
CD44-237ENST00000534082 MAPK8IP2Q13387 824 aaPredicted RBP13.38□□□□□ -0.27
CD44-237ENST00000534082 SCAF1Q9H7N4 1312 aaKnown RBP13.35□□□□□ -0.27
CD44-237ENST00000534082 SMARCA4P51532 1647 aa13.35□□□□□ -0.27
CD44-237ENST00000534082 BAZ1BQ9UIG0 1483 aaKnown RBP13.34□□□□□ -0.27
CD44-237ENST00000534082 BAZ1AQ9NRL2 1556 aaPredicted RBP13.32□□□□□ -0.28
CD44-237ENST00000534082 PDS5BQ9NTI5 1447 aa13.32□□□□□ -0.28
CD44-237ENST00000534082 MRC2Q9UBG0 1479 aa13.27□□□□□ -0.29
CD44-237ENST00000534082 WDR62O43379 1518 aa13.25□□□□□ -0.29
CD44-237ENST00000534082 PEG3Q9GZU2 1588 aa13.22□□□□□ -0.29
CD44-237ENST00000534082 PPP4R3CPQ6ZMV5 832 aa13.21□□□□□ -0.29
CD44-237ENST00000534082 OSCARQ8IYS5 282 aa13.21□□□□□ -0.29
CD44-237ENST00000534082 DMRT2Q9Y5R5 561 aa13.2□□□□□ -0.3
CD44-237ENST00000534082 RIMBP3CA6NJZ7 1639 aa13.17□□□□□ -0.3
CD44-237ENST00000534082 RIMBP3BA6NNM3 1639 aa13.17□□□□□ -0.3
CD44-237ENST00000534082 RIMBP3Q9UFD9 1639 aa13.17□□□□□ -0.3
CD44-237ENST00000534082 CADPSQ9ULU8 1353 aa13.15□□□□□ -0.3
CD44-237ENST00000534082 CEP164Q9UPV0 1460 aa13.1□□□□□ -0.31
CD44-237ENST00000534082 ARHGEF11O15085 1522 aa13.08□□□□□ -0.32
CD44-237ENST00000534082 MROH2BQ7Z745 1585 aa13.06□□□□□ -0.32
CD44-237ENST00000534082 FANCD2Q9BXW9 1451 aa13.03□□□□□ -0.32
CD44-237ENST00000534082 TRHP20396 242 aaPredicted RBP13□□□□□ -0.33
CD44-237ENST00000534082 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
CD44-237ENST00000534082 URB2Q14146 1524 aaKnown RBP12.96□□□□□ -0.33
CD44-237ENST00000534082 ARAP1Q96P48 1450 aa12.91□□□□□ -0.34
CD44-237ENST00000534082 CNKSR2Q8WXI2 1034 aa12.9□□□□□ -0.34
CD44-237ENST00000534082 CFTRP13569 1480 aa12.9□□□□□ -0.34
CD44-237ENST00000534082 ZNF608Q9ULD9 1512 aaPredicted RBP12.89□□□□□ -0.35
CD44-237ENST00000534082 WIZO95785 1651 aa12.86□□□□□ -0.35
CD44-237ENST00000534082 IFT140Q96RY7 1462 aa12.85□□□□□ -0.35
CD44-237ENST00000534082 EIF4G3O43432 1585 aaKnown RBP12.81□□□□□ -0.36
CD44-237ENST00000534082 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
CD44-237ENST00000534082 DCAF8L1A6NGE4 600 aa12.81□□□□□ -0.36
CD44-237ENST00000534082 CHD1O14646 1710 aa12.79□□□□□ -0.36
CD44-237ENST00000534082 NCBP3Q53F19 620 aaKnown RBP12.76□□□□□ -0.37
CD44-237ENST00000534082 HOXD11P31277 338 aaPredicted RBP12.75□□□□□ -0.37
CD44-237ENST00000534082 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
CD44-237ENST00000534082 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
CD44-237ENST00000534082 TOPBP1Q92547 1522 aa12.72□□□□□ -0.37
CD44-237ENST00000534082 TOP2AP11388 1531 aaKnown RBP12.69□□□□□ -0.38
CD44-237ENST00000534082 FBLN2P98095 1184 aa12.69□□□□□ -0.38
CD44-237ENST00000534082 AQRO60306 1485 aaKnown RBP eCLIP12.68□□□□□ -0.38
CD44-237ENST00000534082 CLASP1Q7Z460 1538 aa12.66□□□□□ -0.38
CD44-237ENST00000534082 TARBP1Q13395 1621 aaKnown RBP12.65□□□□□ -0.38
CD44-237ENST00000534082 DNMBPQ6XZF7 1577 aa12.64□□□□□ -0.39
CD44-237ENST00000534082 ABCC8Q09428 1581 aa12.63□□□□□ -0.39
CD44-237ENST00000534082 SYNJ1O43426 1573 aa12.59□□□□□ -0.39
CD44-237ENST00000534082 SNAPC4Q5SXM2 1469 aa12.57□□□□□ -0.4
CD44-237ENST00000534082 NPM3O75607 178 aaKnown RBP12.56□□□□□ -0.4
CD44-237ENST00000534082 POLA1P09884 1462 aaPredicted RBP12.56□□□□□ -0.4
CD44-237ENST00000534082 GAPVD1Q14C86 1478 aa12.55□□□□□ -0.4
CD44-237ENST00000534082 ILDR1Q86SU0 546 aaPredicted RBP12.55□□□□□ -0.4
CD44-237ENST00000534082 TDRD9Q8NDG6 1382 aaKnown RBP12.52□□□□□ -0.41
CD44-237ENST00000534082 CCDC88BA6NC98 1476 aa12.52□□□□□ -0.41
CD44-237ENST00000534082 RAD54L2Q9Y4B4 1467 aa12.51□□□□□ -0.41
CD44-237ENST00000534082 CHMP7Q8WUX9 453 aaPredicted RBP12.5□□□□□ -0.41
CD44-237ENST00000534082 MAGI1Q96QZ7 1491 aaPredicted RBP12.5□□□□□ -0.41
CD44-237ENST00000534082 WDR97A6NE52 1622 aa12.49□□□□□ -0.41
CD44-237ENST00000534082 KCNA4P22459 653 aa12.49□□□□□ -0.41
CD44-237ENST00000534082 SYNJ2O15056 1496 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms