RNA–Protein interactions for RNA: ENST00000534062.1

RTL1-201, Transcript of retrotransposon Gag like 1, humanhuman

APPRIS P1 BASIC

Gene RTL1, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTL1-201ENST00000534062 NISCHQ9Y2I1 1504 aa21.12■□□□□ 0.97
RTL1-201ENST00000534062 CCDC180Q9P1Z9 1646 aa18.26■□□□□ 0.51
RTL1-201ENST00000534062 DCAF8L2P0C7V8 631 aa18.14■□□□□ 0.49
RTL1-201ENST00000534062 ABCC9O60706 1549 aa17.78■□□□□ 0.44
RTL1-201ENST00000534062 SHROOM4Q9ULL8 1493 aa17.69■□□□□ 0.42
RTL1-201ENST00000534062 ZCCHC6Q5VYS8 1495 aaKnown RBP17.67■□□□□ 0.42
RTL1-201ENST00000534062 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
RTL1-201ENST00000534062 NACADO15069 1562 aa17.13■□□□□ 0.33
RTL1-201ENST00000534062 SCRIBQ14160 1630 aa17.11■□□□□ 0.33
RTL1-201ENST00000534062 RB1CC1Q8TDY2 1594 aa17.08■□□□□ 0.32
RTL1-201ENST00000534062 SUPT5HO00267 1087 aaKnown RBP17.04■□□□□ 0.32
RTL1-201ENST00000534062 MYO15BQ96JP2 1530 aa17.03■□□□□ 0.32
RTL1-201ENST00000534062 PABPN1Q86U42 306 aaKnown RBP eCLIP16.89■□□□□ 0.3
RTL1-201ENST00000534062 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
RTL1-201ENST00000534062 CECR2Q9BXF3 1484 aa16.54■□□□□ 0.24
RTL1-201ENST00000534062 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.23
RTL1-201ENST00000534062 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
RTL1-201ENST00000534062 MROH2BQ7Z745 1585 aa16.38■□□□□ 0.21
RTL1-201ENST00000534062 BAZ1AQ9NRL2 1556 aaPredicted RBP16.33■□□□□ 0.2
RTL1-201ENST00000534062 WIZO95785 1651 aa16.24■□□□□ 0.19
RTL1-201ENST00000534062 SMARCA4P51532 1647 aa16.23■□□□□ 0.19
RTL1-201ENST00000534062 EIF4G1Q04637 1599 aaKnown RBP16.08■□□□□ 0.16
RTL1-201ENST00000534062 ATAD2BQ9ULI0 1458 aa16.04■□□□□ 0.16
RTL1-201ENST00000534062 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
RTL1-201ENST00000534062 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
RTL1-201ENST00000534062 SMARCA2P51531 1590 aa16■□□□□ 0.15
RTL1-201ENST00000534062 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
RTL1-201ENST00000534062 CCDC88BA6NC98 1476 aa15.93■□□□□ 0.14
RTL1-201ENST00000534062 TRIM41Q8WV44 630 aa15.92■□□□□ 0.14
RTL1-201ENST00000534062 CC2D2AQ9P2K1 1620 aa15.89■□□□□ 0.13
RTL1-201ENST00000534062 PEG3Q9GZU2 1588 aa15.86■□□□□ 0.13
RTL1-201ENST00000534062 NCAPD3P42695 1498 aa15.85■□□□□ 0.13
RTL1-201ENST00000534062 FAM9AQ8IZU1 332 aaPredicted RBP15.82■□□□□ 0.12
RTL1-201ENST00000534062 EHMT2Q96KQ7 1210 aa15.77■□□□□ 0.12
RTL1-201ENST00000534062 HMGXB3Q12766 1538 aa15.76■□□□□ 0.11
RTL1-201ENST00000534062 DNAJC5BQ9UF47 199 aa15.73■□□□□ 0.11
RTL1-201ENST00000534062 ABCC8Q09428 1581 aa15.66■□□□□ 0.1
RTL1-201ENST00000534062 LOC105371045A0A1W2PR82 267 aa15.57■□□□□ 0.08
RTL1-201ENST00000534062 CADPSQ9ULU8 1353 aa15.57■□□□□ 0.08
RTL1-201ENST00000534062 WRNQ14191 1432 aaPredicted RBP eCLIP15.55■□□□□ 0.08
RTL1-201ENST00000534062 NESP48681 1621 aa15.52■□□□□ 0.07
RTL1-201ENST00000534062 CFTRP13569 1480 aa15.5■□□□□ 0.07
RTL1-201ENST00000534062 FANCD2Q9BXW9 1451 aa15.41■□□□□ 0.06
RTL1-201ENST00000534062 SYNJ1O43426 1573 aa15.38■□□□□ 0.05
RTL1-201ENST00000534062 SOGA1O94964 1423 aa15.38■□□□□ 0.05
RTL1-201ENST00000534062 PDS5BQ9NTI5 1447 aa15.36■□□□□ 0.05
RTL1-201ENST00000534062 PELP1Q8IZL8 1130 aaKnown RBP15.35■□□□□ 0.05
RTL1-201ENST00000534062 UBTFP17480 764 aaKnown RBP15.34■□□□□ 0.05
RTL1-201ENST00000534062 CSRNP3Q8WYN3 585 aa15.32■□□□□ 0.04
RTL1-201ENST00000534062 CEP164Q9UPV0 1460 aa15.32■□□□□ 0.04
RTL1-201ENST00000534062 RANGAP1P46060 587 aaPredicted RBP15.32■□□□□ 0.04
RTL1-201ENST00000534062 LAMC3Q9Y6N6 1575 aa15.31■□□□□ 0.04
RTL1-201ENST00000534062 RUSC2Q8N2Y8 1516 aa15.3■□□□□ 0.04
RTL1-201ENST00000534062 CUX1P39880 1505 aa15.3■□□□□ 0.04
RTL1-201ENST00000534062 ERCC6Q03468 1493 aa15.3■□□□□ 0.04
RTL1-201ENST00000534062 HRCP23327 699 aa15.25■□□□□ 0.03
RTL1-201ENST00000534062 TOP2BQ02880 1626 aa15.25■□□□□ 0.03
RTL1-201ENST00000534062 PRDM2Q13029 1718 aa15.23■□□□□ 0.03
RTL1-201ENST00000534062 FGD5Q6ZNL6 1462 aa15.22■□□□□ 0.03
RTL1-201ENST00000534062 CUX2O14529 1486 aa15.19■□□□□ 0.02
RTL1-201ENST00000534062 EEA1Q15075 1411 aa15.19■□□□□ 0.02
RTL1-201ENST00000534062 TOPBP1Q92547 1522 aa15.18■□□□□ 0.02
RTL1-201ENST00000534062 KIF27Q86VH2 1401 aa15.18■□□□□ 0.02
RTL1-201ENST00000534062 KIF21AQ7Z4S6 1674 aa15.17■□□□□ 0.02
RTL1-201ENST00000534062 RAD54L2Q9Y4B4 1467 aa15.17■□□□□ 0.02
RTL1-201ENST00000534062 BIVM-ERCC5R4GMW8 1640 aa15.17■□□□□ 0.02
RTL1-201ENST00000534062 URB2Q14146 1524 aaKnown RBP15.15■□□□□ 0.02
RTL1-201ENST00000534062 DNMBPQ6XZF7 1577 aa15.14■□□□□ 0.01
RTL1-201ENST00000534062 POLA1P09884 1462 aaPredicted RBP15.12■□□□□ 0.01
RTL1-201ENST00000534062 TDRD9Q8NDG6 1382 aaKnown RBP15.12■□□□□ 0.01
RTL1-201ENST00000534062 MRC2Q9UBG0 1479 aa15.1■□□□□ 0.01
RTL1-201ENST00000534062 GOLGA3Q08378 1498 aa15.07■□□□□ 0
RTL1-201ENST00000534062 TTBK1Q5TCY1 1321 aaPredicted RBP15.05■□□□□ 0
RTL1-201ENST00000534062 PPARGC1BQ86YN6 1023 aaKnown RBP15.05■□□□□ -0
RTL1-201ENST00000534062 RAPGEF2Q9Y4G8 1499 aa15.03■□□□□ -0
RTL1-201ENST00000534062 FBLN2P98095 1184 aa15.01□□□□□ -0.01
RTL1-201ENST00000534062 CARMIL1Q5VZK9 1371 aa15.01□□□□□ -0.01
RTL1-201ENST00000534062 IGF1RP08069 1367 aa15□□□□□ -0.01
RTL1-201ENST00000534062 TNIKQ9UKE5 1360 aa14.98□□□□□ -0.01
RTL1-201ENST00000534062 CEP162Q5TB80 1403 aa14.98□□□□□ -0.01
RTL1-201ENST00000534062 AQRO60306 1485 aaKnown RBP eCLIP14.98□□□□□ -0.01
RTL1-201ENST00000534062 ABCA10Q8WWZ4 1543 aa14.97□□□□□ -0.01
RTL1-201ENST00000534062 GAPVD1Q14C86 1478 aa14.95□□□□□ -0.02
RTL1-201ENST00000534062 P3H3Q8IVL6 736 aa14.92□□□□□ -0.02
RTL1-201ENST00000534062 KIF21BO75037 1637 aa14.91□□□□□ -0.02
RTL1-201ENST00000534062 PRXQ9BXM0 1461 aa14.91□□□□□ -0.02
RTL1-201ENST00000534062 CLIP1P30622 1438 aa14.91□□□□□ -0.02
RTL1-201ENST00000534062 ATP1B4Q9UN42 357 aaPredicted RBP14.91□□□□□ -0.02
RTL1-201ENST00000534062 WDR62O43379 1518 aa14.9□□□□□ -0.02
RTL1-201ENST00000534062 ZNF608Q9ULD9 1512 aaPredicted RBP14.9□□□□□ -0.02
RTL1-201ENST00000534062 APLP2Q06481 763 aa14.9□□□□□ -0.02
RTL1-201ENST00000534062 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
RTL1-201ENST00000534062 PCGF6Q9BYE7 350 aa14.88□□□□□ -0.03
RTL1-201ENST00000534062 CHMP7Q8WUX9 453 aaPredicted RBP14.87□□□□□ -0.03
RTL1-201ENST00000534062 THOC2Q8NI27 1593 aaKnown RBP14.86□□□□□ -0.03
RTL1-201ENST00000534062 MYT1Q01538 1121 aa14.85□□□□□ -0.03
RTL1-201ENST00000534062 TARBP1Q13395 1621 aaKnown RBP14.83□□□□□ -0.03
RTL1-201ENST00000534062 ERICH3Q5RHP9 1530 aa14.83□□□□□ -0.04
RTL1-201ENST00000534062 GRIN2BQ13224 1484 aa14.81□□□□□ -0.04
RTL1-201ENST00000534062 ABCA5Q8WWZ7 1642 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms