RNA–Protein interactions for RNA: ENST00000533834.1

RNPC3-209, Transcript of RNA binding region (RNP1, RRM) containing 3, humanhuman

TSL 1 (best)

Gene RNPC3, Length 3,658 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNPC3-209ENST00000533834 NISCHQ9Y2I1 1504 aa16.09■□□□□ 0.17
RNPC3-209ENST00000533834 AEBP2Q6ZN18 517 aaPredicted RBP15.58■□□□□ 0.09
RNPC3-209ENST00000533834 CHIC1Q5VXU3 224 aa14.31□□□□□ -0.12
RNPC3-209ENST00000533834 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
RNPC3-209ENST00000533834 ZCCHC6Q5VYS8 1495 aaKnown RBP13.69□□□□□ -0.22
RNPC3-209ENST00000533834 DCAF1Q9Y4B6 1507 aa13.44□□□□□ -0.26
RNPC3-209ENST00000533834 SENP3Q9H4L4 574 aaPredicted RBP13.18□□□□□ -0.3
RNPC3-209ENST00000533834 MYO15BQ96JP2 1530 aa13.12□□□□□ -0.31
RNPC3-209ENST00000533834 PHF23Q9BUL5 403 aaPredicted RBP13.06□□□□□ -0.32
RNPC3-209ENST00000533834 POTEDQ86YR6 584 aa13.03□□□□□ -0.32
RNPC3-209ENST00000533834 SHROOM4Q9ULL8 1493 aa12.98□□□□□ -0.33
RNPC3-209ENST00000533834 ABCC9O60706 1549 aa12.95□□□□□ -0.34
RNPC3-209ENST00000533834 NACADO15069 1562 aa12.74□□□□□ -0.37
RNPC3-209ENST00000533834 SCRIBQ14160 1630 aa12.71□□□□□ -0.38
RNPC3-209ENST00000533834 UNC13AQ9UPW8 1703 aa12.7□□□□□ -0.38
RNPC3-209ENST00000533834 EIF4G1Q04637 1599 aaKnown RBP12.62□□□□□ -0.39
RNPC3-209ENST00000533834 RSF1Q96T23 1441 aaPredicted RBP12.59□□□□□ -0.39
RNPC3-209ENST00000533834 FOXD1Q16676 465 aa12.55□□□□□ -0.4
RNPC3-209ENST00000533834 RB1CC1Q8TDY2 1594 aa12.54□□□□□ -0.4
RNPC3-209ENST00000533834 SUPT5HO00267 1087 aaKnown RBP12.52□□□□□ -0.4
RNPC3-209ENST00000533834 MROH2BQ7Z745 1585 aa12.47□□□□□ -0.41
RNPC3-209ENST00000533834 BAZ1AQ9NRL2 1556 aaPredicted RBP12.46□□□□□ -0.42
RNPC3-209ENST00000533834 CECR2Q9BXF3 1484 aa12.45□□□□□ -0.42
RNPC3-209ENST00000533834 WIZO95785 1651 aa12.45□□□□□ -0.42
RNPC3-209ENST00000533834 BICRAQ9NZM4 1560 aa12.41□□□□□ -0.42
RNPC3-209ENST00000533834 SMARCA4P51532 1647 aa12.34□□□□□ -0.43
RNPC3-209ENST00000533834 PEG3Q9GZU2 1588 aa12.32□□□□□ -0.44
RNPC3-209ENST00000533834 DCAF8L2P0C7V8 631 aa12.31□□□□□ -0.44
RNPC3-209ENST00000533834 TOP2AP11388 1531 aaKnown RBP12.26□□□□□ -0.45
RNPC3-209ENST00000533834 SMARCA2P51531 1590 aa12.23□□□□□ -0.45
RNPC3-209ENST00000533834 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.48
RNPC3-209ENST00000533834 ABCC8Q09428 1581 aa11.98□□□□□ -0.49
RNPC3-209ENST00000533834 LOC105371045A0A1W2PR82 267 aa11.97□□□□□ -0.49
RNPC3-209ENST00000533834 ATAD2BQ9ULI0 1458 aa11.91□□□□□ -0.5
RNPC3-209ENST00000533834 SYNJ1O43426 1573 aa11.9□□□□□ -0.5
RNPC3-209ENST00000533834 PRDM2Q13029 1718 aa11.9□□□□□ -0.5
RNPC3-209ENST00000533834 BIVM-ERCC5R4GMW8 1640 aa11.89□□□□□ -0.51
RNPC3-209ENST00000533834 HRCP23327 699 aa11.88□□□□□ -0.51
RNPC3-209ENST00000533834 HMGXB3Q12766 1538 aa11.86□□□□□ -0.51
RNPC3-209ENST00000533834 MSH5O43196 834 aa11.82□□□□□ -0.52
RNPC3-209ENST00000533834 KIF21BO75037 1637 aa11.81□□□□□ -0.52
RNPC3-209ENST00000533834 TOP2BQ02880 1626 aa11.8□□□□□ -0.52
RNPC3-209ENST00000533834 WRNQ14191 1432 aaPredicted RBP eCLIP11.8□□□□□ -0.52
RNPC3-209ENST00000533834 RUSC2Q8N2Y8 1516 aa11.79□□□□□ -0.52
RNPC3-209ENST00000533834 SOGA1O94964 1423 aa11.76□□□□□ -0.53
RNPC3-209ENST00000533834 TRIM41Q8WV44 630 aa11.76□□□□□ -0.53
RNPC3-209ENST00000533834 NCAPD3P42695 1498 aa11.75□□□□□ -0.53
RNPC3-209ENST00000533834 BAZ1BQ9UIG0 1483 aaKnown RBP11.71□□□□□ -0.53
RNPC3-209ENST00000533834 EEA1Q15075 1411 aa11.71□□□□□ -0.54
RNPC3-209ENST00000533834 PCGF6Q9BYE7 350 aa11.68□□□□□ -0.54
RNPC3-209ENST00000533834 TRIM26Q12899 539 aaPredicted RBP11.66□□□□□ -0.54
RNPC3-209ENST00000533834 PABPN1Q86U42 306 aaKnown RBP eCLIP11.65□□□□□ -0.54
RNPC3-209ENST00000533834 TNIKQ9UKE5 1360 aa11.65□□□□□ -0.55
RNPC3-209ENST00000533834 CUX1P39880 1505 aa11.64□□□□□ -0.55
RNPC3-209ENST00000533834 CFTRP13569 1480 aa11.62□□□□□ -0.55
RNPC3-209ENST00000533834 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
RNPC3-209ENST00000533834 ERICH3Q5RHP9 1530 aa11.6□□□□□ -0.55
RNPC3-209ENST00000533834 GOLGA3Q08378 1498 aa11.58□□□□□ -0.56
RNPC3-209ENST00000533834 PRXQ9BXM0 1461 aa11.57□□□□□ -0.56
RNPC3-209ENST00000533834 PIAS4Q8N2W9 510 aaPredicted RBP11.56□□□□□ -0.56
RNPC3-209ENST00000533834 WDR97A6NE52 1622 aa11.55□□□□□ -0.56
RNPC3-209ENST00000533834 PPARGC1BQ86YN6 1023 aaKnown RBP11.54□□□□□ -0.56
RNPC3-209ENST00000533834 CEP164Q9UPV0 1460 aa11.54□□□□□ -0.56
RNPC3-209ENST00000533834 RAPGEF2Q9Y4G8 1499 aa11.52□□□□□ -0.57
RNPC3-209ENST00000533834 CC2D2AQ9P2K1 1620 aa11.5□□□□□ -0.57
RNPC3-209ENST00000533834 FAM9AQ8IZU1 332 aaPredicted RBP11.48□□□□□ -0.57
RNPC3-209ENST00000533834 ARAP1Q96P48 1450 aa11.46□□□□□ -0.57
RNPC3-209ENST00000533834 CSRNP3Q8WYN3 585 aa11.45□□□□□ -0.58
RNPC3-209ENST00000533834 CLIP1P30622 1438 aa11.41□□□□□ -0.58
RNPC3-209ENST00000533834 VPS8Q8N3P4 1428 aa11.4□□□□□ -0.58
RNPC3-209ENST00000533834 LRRIQ1Q96JM4 1722 aa11.36□□□□□ -0.59
RNPC3-209ENST00000533834 CFAP43Q8NDM7 1665 aa11.35□□□□□ -0.59
RNPC3-209ENST00000533834 DNMBPQ6XZF7 1577 aa11.35□□□□□ -0.59
RNPC3-209ENST00000533834 ABCA5Q8WWZ7 1642 aa11.34□□□□□ -0.59
RNPC3-209ENST00000533834 CUX2O14529 1486 aa11.32□□□□□ -0.6
RNPC3-209ENST00000533834 CTTNBP2Q8WZ74 1663 aa11.32□□□□□ -0.6
RNPC3-209ENST00000533834 ARHGAP35Q9NRY4 1499 aa11.32□□□□□ -0.6
RNPC3-209ENST00000533834 CADPSQ9ULU8 1353 aa11.32□□□□□ -0.6
RNPC3-209ENST00000533834 MAP3K1Q13233 1512 aa11.31□□□□□ -0.6
RNPC3-209ENST00000533834 FGD5Q6ZNL6 1462 aa11.3□□□□□ -0.6
RNPC3-209ENST00000533834 LAMC3Q9Y6N6 1575 aa11.29□□□□□ -0.6
RNPC3-209ENST00000533834 ABCA10Q8WWZ4 1543 aa11.29□□□□□ -0.6
RNPC3-209ENST00000533834 CUL7Q14999 1698 aa11.28□□□□□ -0.6
RNPC3-209ENST00000533834 KIF21AQ7Z4S6 1674 aa11.28□□□□□ -0.6
RNPC3-209ENST00000533834 PPP6R1Q9UPN7 881 aa11.28□□□□□ -0.6
RNPC3-209ENST00000533834 TARBP1Q13395 1621 aaKnown RBP11.27□□□□□ -0.61
RNPC3-209ENST00000533834 IGF1RP08069 1367 aa11.26□□□□□ -0.61
RNPC3-209ENST00000533834 RRBP1Q9P2E9 1410 aaKnown RBP11.25□□□□□ -0.61
RNPC3-209ENST00000533834 TOPBP1Q92547 1522 aa11.25□□□□□ -0.61
RNPC3-209ENST00000533834 ZEB1P37275 1124 aaPredicted RBP11.25□□□□□ -0.61
RNPC3-209ENST00000533834 SAMD9Q5K651 1589 aa11.25□□□□□ -0.61
RNPC3-209ENST00000533834 KIF27Q86VH2 1401 aa11.25□□□□□ -0.61
RNPC3-209ENST00000533834 URB2Q14146 1524 aaKnown RBP11.24□□□□□ -0.61
RNPC3-209ENST00000533834 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
RNPC3-209ENST00000533834 TIAM1Q13009 1591 aa11.23□□□□□ -0.61
RNPC3-209ENST00000533834 POLA1P09884 1462 aaPredicted RBP11.23□□□□□ -0.61
RNPC3-209ENST00000533834 NESP48681 1621 aa11.22□□□□□ -0.61
RNPC3-209ENST00000533834 EHMT2Q96KQ7 1210 aa11.2□□□□□ -0.62
RNPC3-209ENST00000533834 PCF11O94913 1555 aaKnown RBP11.2□□□□□ -0.62
RNPC3-209ENST00000533834 ADRA2BP18089 450 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms