RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, humanhuman

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-222ENST00000533733 NISCHQ9Y2I1 1504 aa25.57■■□□□ 1.68
ATM-222ENST00000533733 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.13
ATM-222ENST00000533733 ZCCHC6Q5VYS8 1495 aaKnown RBP21.62■■□□□ 1.05
ATM-222ENST00000533733 DCAF1Q9Y4B6 1507 aa21.25■□□□□ 0.99
ATM-222ENST00000533733 SHROOM4Q9ULL8 1493 aa21.1■□□□□ 0.97
ATM-222ENST00000533733 MYO15BQ96JP2 1530 aa20.77■□□□□ 0.92
ATM-222ENST00000533733 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
ATM-222ENST00000533733 SUPT5HO00267 1087 aaKnown RBP20.64■□□□□ 0.89
ATM-222ENST00000533733 NACADO15069 1562 aa20.41■□□□□ 0.86
ATM-222ENST00000533733 ABCC9O60706 1549 aa20.39■□□□□ 0.85
ATM-222ENST00000533733 SCRIBQ14160 1630 aa20.27■□□□□ 0.84
ATM-222ENST00000533733 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
ATM-222ENST00000533733 RB1CC1Q8TDY2 1594 aa20.07■□□□□ 0.8
ATM-222ENST00000533733 RSF1Q96T23 1441 aaPredicted RBP20.02■□□□□ 0.8
ATM-222ENST00000533733 AEBP2Q6ZN18 517 aaPredicted RBP19.82■□□□□ 0.76
ATM-222ENST00000533733 BAZ1AQ9NRL2 1556 aaPredicted RBP19.74■□□□□ 0.75
ATM-222ENST00000533733 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
ATM-222ENST00000533733 MROH2BQ7Z745 1585 aa19.71■□□□□ 0.75
ATM-222ENST00000533733 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
ATM-222ENST00000533733 WIZO95785 1651 aa19.62■□□□□ 0.73
ATM-222ENST00000533733 SMARCA4P51532 1647 aa19.55■□□□□ 0.72
ATM-222ENST00000533733 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
ATM-222ENST00000533733 TRIM41Q8WV44 630 aa19.45■□□□□ 0.7
ATM-222ENST00000533733 EIF4G1Q04637 1599 aaKnown RBP19.42■□□□□ 0.7
ATM-222ENST00000533733 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
ATM-222ENST00000533733 PEG3Q9GZU2 1588 aa19.33■□□□□ 0.69
ATM-222ENST00000533733 LOC105371045A0A1W2PR82 267 aa19.31■□□□□ 0.68
ATM-222ENST00000533733 SMARCA2P51531 1590 aa19.3■□□□□ 0.68
ATM-222ENST00000533733 CCDC88BA6NC98 1476 aa19.22■□□□□ 0.67
ATM-222ENST00000533733 HRCP23327 699 aa19.2■□□□□ 0.66
ATM-222ENST00000533733 PCGF6Q9BYE7 350 aa19.16■□□□□ 0.66
ATM-222ENST00000533733 TRIM26Q12899 539 aaPredicted RBP19.11■□□□□ 0.65
ATM-222ENST00000533733 EEA1Q15075 1411 aa19.03■□□□□ 0.64
ATM-222ENST00000533733 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
ATM-222ENST00000533733 ATAD2BQ9ULI0 1458 aa19.01■□□□□ 0.63
ATM-222ENST00000533733 ABCC8Q09428 1581 aa19■□□□□ 0.63
ATM-222ENST00000533733 FAM9AQ8IZU1 332 aaPredicted RBP18.99■□□□□ 0.63
ATM-222ENST00000533733 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
ATM-222ENST00000533733 HMGXB3Q12766 1538 aa18.87■□□□□ 0.61
ATM-222ENST00000533733 WRNQ14191 1432 aaPredicted RBP eCLIP18.85■□□□□ 0.61
ATM-222ENST00000533733 ZEB1P37275 1124 aaPredicted RBP18.79■□□□□ 0.6
ATM-222ENST00000533733 TNIKQ9UKE5 1360 aa18.78■□□□□ 0.6
ATM-222ENST00000533733 NCAPD3P42695 1498 aa18.78■□□□□ 0.6
ATM-222ENST00000533733 SYNJ1O43426 1573 aa18.75■□□□□ 0.59
ATM-222ENST00000533733 SOGA1O94964 1423 aa18.74■□□□□ 0.59
ATM-222ENST00000533733 GOLGA3Q08378 1498 aa18.73■□□□□ 0.59
ATM-222ENST00000533733 KIF21BO75037 1637 aa18.73■□□□□ 0.59
ATM-222ENST00000533733 CSRNP3Q8WYN3 585 aa18.72■□□□□ 0.59
ATM-222ENST00000533733 BIVM-ERCC5R4GMW8 1640 aa18.7■□□□□ 0.58
ATM-222ENST00000533733 TOP2BQ02880 1626 aa18.69■□□□□ 0.58
ATM-222ENST00000533733 CEP162Q5TB80 1403 aa18.68■□□□□ 0.58
ATM-222ENST00000533733 CEP164Q9UPV0 1460 aa18.68■□□□□ 0.58
ATM-222ENST00000533733 PRDM2Q13029 1718 aa18.65■□□□□ 0.58
ATM-222ENST00000533733 RUSC2Q8N2Y8 1516 aa18.61■□□□□ 0.57
ATM-222ENST00000533733 EHMT2Q96KQ7 1210 aa18.6■□□□□ 0.57
ATM-222ENST00000533733 CFTRP13569 1480 aa18.52■□□□□ 0.56
ATM-222ENST00000533733 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
ATM-222ENST00000533733 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
ATM-222ENST00000533733 PPARGC1BQ86YN6 1023 aaKnown RBP18.48■□□□□ 0.55
ATM-222ENST00000533733 CUX1P39880 1505 aa18.41■□□□□ 0.54
ATM-222ENST00000533733 CLIP1P30622 1438 aa18.4■□□□□ 0.54
ATM-222ENST00000533733 PRXQ9BXM0 1461 aa18.37■□□□□ 0.53
ATM-222ENST00000533733 RAPGEF2Q9Y4G8 1499 aa18.37■□□□□ 0.53
ATM-222ENST00000533733 VPS8Q8N3P4 1428 aa18.37■□□□□ 0.53
ATM-222ENST00000533733 KIF27Q86VH2 1401 aa18.35■□□□□ 0.53
ATM-222ENST00000533733 CC2D2AQ9P2K1 1620 aa18.31■□□□□ 0.52
ATM-222ENST00000533733 CADPSQ9ULU8 1353 aa18.31■□□□□ 0.52
ATM-222ENST00000533733 APLP2Q06481 763 aa18.2■□□□□ 0.5
ATM-222ENST00000533733 CCER1Q8TC90 406 aaPredicted RBP18.2■□□□□ 0.5
ATM-222ENST00000533733 DNMBPQ6XZF7 1577 aa18.13■□□□□ 0.49
ATM-222ENST00000533733 ARAP1Q96P48 1450 aa18.13■□□□□ 0.49
ATM-222ENST00000533733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.12■□□□□ 0.49
ATM-222ENST00000533733 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
ATM-222ENST00000533733 CUX2O14529 1486 aa18.11■□□□□ 0.49
ATM-222ENST00000533733 FANCD2Q9BXW9 1451 aa18.11■□□□□ 0.49
ATM-222ENST00000533733 LAMC3Q9Y6N6 1575 aa18.1■□□□□ 0.49
ATM-222ENST00000533733 DNAJC5BQ9UF47 199 aa18.08■□□□□ 0.48
ATM-222ENST00000533733 IGF1RP08069 1367 aa18.05■□□□□ 0.48
ATM-222ENST00000533733 MAP3K1Q13233 1512 aa18.03■□□□□ 0.48
ATM-222ENST00000533733 CUL7Q14999 1698 aa18.02■□□□□ 0.48
ATM-222ENST00000533733 ABCA10Q8WWZ4 1543 aa18.02■□□□□ 0.48
ATM-222ENST00000533733 ARHGAP35Q9NRY4 1499 aa18.02■□□□□ 0.47
ATM-222ENST00000533733 TTBK1Q5TCY1 1321 aaPredicted RBP18.02■□□□□ 0.47
ATM-222ENST00000533733 CARMIL1Q5VZK9 1371 aa18■□□□□ 0.47
ATM-222ENST00000533733 TOPBP1Q92547 1522 aa18■□□□□ 0.47
ATM-222ENST00000533733 WDR97A6NE52 1622 aa17.96■□□□□ 0.47
ATM-222ENST00000533733 POLA1P09884 1462 aaPredicted RBP17.94■□□□□ 0.46
ATM-222ENST00000533733 RRBP1Q9P2E9 1410 aaKnown RBP17.94■□□□□ 0.46
ATM-222ENST00000533733 CLSPNQ9HAW4 1339 aa17.92■□□□□ 0.46
ATM-222ENST00000533733 EFCAB5A4FU69 1503 aa17.92■□□□□ 0.46
ATM-222ENST00000533733 CTTNBP2Q8WZ74 1663 aa17.92■□□□□ 0.46
ATM-222ENST00000533733 FHAD1B1AJZ9 1412 aa17.92■□□□□ 0.46
ATM-222ENST00000533733 TIAM1Q13009 1591 aa17.89■□□□□ 0.45
ATM-222ENST00000533733 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.45
ATM-222ENST00000533733 RANGAP1P46060 587 aaPredicted RBP17.88■□□□□ 0.45
ATM-222ENST00000533733 CFAP43Q8NDM7 1665 aa17.87■□□□□ 0.45
ATM-222ENST00000533733 NESP48681 1621 aa17.85■□□□□ 0.45
ATM-222ENST00000533733 HNRNPUL2Q1KMD3 747 aaKnown RBP17.85■□□□□ 0.45
ATM-222ENST00000533733 ABCA5Q8WWZ7 1642 aa17.84■□□□□ 0.45
ATM-222ENST00000533733 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms