RNA–Protein interactions for RNA: ENST00000533499.1

NXF1-216, Transcript of nuclear RNA export factor 1, humanhuman

TSL 5

Gene NXF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-216ENST00000533499 NISCHQ9Y2I1 1504 aa41.26■■■■■ 4.2
NXF1-216ENST00000533499 CCDC180Q9P1Z9 1646 aa36.45■■■■□ 3.42
NXF1-216ENST00000533499 ABCC9O60706 1549 aa35.39■■■■□ 3.26
NXF1-216ENST00000533499 DCAF8L2P0C7V8 631 aa34.61■■■■□ 3.13
NXF1-216ENST00000533499 ZCCHC6Q5VYS8 1495 aaKnown RBP34.45■■■■□ 3.1
NXF1-216ENST00000533499 NACADO15069 1562 aa34.16■■■■□ 3.06
NXF1-216ENST00000533499 RB1CC1Q8TDY2 1594 aa34.14■■■■□ 3.06
NXF1-216ENST00000533499 DCAF1Q9Y4B6 1507 aa34.04■■■■□ 3.04
NXF1-216ENST00000533499 MYO15BQ96JP2 1530 aa33.99■■■■□ 3.03
NXF1-216ENST00000533499 SCRIBQ14160 1630 aa33.45■■■□□ 2.95
NXF1-216ENST00000533499 UNC13AQ9UPW8 1703 aa33.38■■■□□ 2.93
NXF1-216ENST00000533499 PABPN1Q86U42 306 aaKnown RBP eCLIP33.2■■■□□ 2.919e-7■□□□□ 8.8
NXF1-216ENST00000533499 SHROOM4Q9ULL8 1493 aa33.14■■■□□ 2.9
NXF1-216ENST00000533499 BICRAQ9NZM4 1560 aa33.04■■■□□ 2.88
NXF1-216ENST00000533499 EIF4G1Q04637 1599 aaKnown RBP32.18■■■□□ 2.74
NXF1-216ENST00000533499 CECR2Q9BXF3 1484 aa32.16■■■□□ 2.74
NXF1-216ENST00000533499 DNAJC5BQ9UF47 199 aa32.01■■■□□ 2.71
NXF1-216ENST00000533499 BAZ1AQ9NRL2 1556 aaPredicted RBP31.96■■■□□ 2.71
NXF1-216ENST00000533499 CC2D2AQ9P2K1 1620 aa31.96■■■□□ 2.71
NXF1-216ENST00000533499 SMARCA4P51532 1647 aa31.94■■■□□ 2.7
NXF1-216ENST00000533499 MROH2BQ7Z745 1585 aa31.85■■■□□ 2.69
NXF1-216ENST00000533499 RSF1Q96T23 1441 aaPredicted RBP31.64■■■□□ 2.66
NXF1-216ENST00000533499 ATAD2BQ9ULI0 1458 aa31.64■■■□□ 2.66
NXF1-216ENST00000533499 SMARCA2P51531 1590 aa31.63■■■□□ 2.65
NXF1-216ENST00000533499 WIZO95785 1651 aa31.57■■■□□ 2.64
NXF1-216ENST00000533499 PEG3Q9GZU2 1588 aa31.51■■■□□ 2.63
NXF1-216ENST00000533499 NCAPD3P42695 1498 aa31.5■■■□□ 2.63
NXF1-216ENST00000533499 BAZ1BQ9UIG0 1483 aaKnown RBP31.47■■■□□ 2.63
NXF1-216ENST00000533499 SUPT5HO00267 1087 aaKnown RBP31.43■■■□□ 2.62
NXF1-216ENST00000533499 HMGXB3Q12766 1538 aa31.39■■■□□ 2.61
NXF1-216ENST00000533499 TOP2AP11388 1531 aaKnown RBP31.21■■■□□ 2.59
NXF1-216ENST00000533499 CCDC88BA6NC98 1476 aa30.87■■■□□ 2.53
NXF1-216ENST00000533499 NESP48681 1621 aa30.73■■■□□ 2.51
NXF1-216ENST00000533499 CADPSQ9ULU8 1353 aa30.67■■■□□ 2.5
NXF1-216ENST00000533499 LAMC3Q9Y6N6 1575 aa30.63■■■□□ 2.49
NXF1-216ENST00000533499 CFTRP13569 1480 aa30.54■■■□□ 2.48
NXF1-216ENST00000533499 ERCC6Q03468 1493 aa30.49■■■□□ 2.47
NXF1-216ENST00000533499 PDS5BQ9NTI5 1447 aa30.46■■■□□ 2.47
NXF1-216ENST00000533499 PRDM2Q13029 1718 aa30.38■■■□□ 2.45
NXF1-216ENST00000533499 KIF21AQ7Z4S6 1674 aa30.37■■■□□ 2.45
NXF1-216ENST00000533499 FANCD2Q9BXW9 1451 aa30.35■■■□□ 2.45
NXF1-216ENST00000533499 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
NXF1-216ENST00000533499 MRC2Q9UBG0 1479 aa30.12■■■□□ 2.41
NXF1-216ENST00000533499 THOC2Q8NI27 1593 aaKnown RBP30.07■■■□□ 2.4
NXF1-216ENST00000533499 URB2Q14146 1524 aaKnown RBP30■■■□□ 2.39
NXF1-216ENST00000533499 ABCC8Q09428 1581 aa29.95■■■□□ 2.39
NXF1-216ENST00000533499 WDR62O43379 1518 aa29.95■■■□□ 2.38
NXF1-216ENST00000533499 TOPBP1Q92547 1522 aa29.91■■■□□ 2.38
NXF1-216ENST00000533499 DNMBPQ6XZF7 1577 aa29.9■■■□□ 2.38
NXF1-216ENST00000533499 WRNQ14191 1432 aaPredicted RBP eCLIP29.86■■■□□ 2.37
NXF1-216ENST00000533499 CUX2O14529 1486 aa29.85■■■□□ 2.37
NXF1-216ENST00000533499 CUX1P39880 1505 aa29.85■■■□□ 2.37
NXF1-216ENST00000533499 SYNJ1O43426 1573 aa29.75■■■□□ 2.35
NXF1-216ENST00000533499 FGD5Q6ZNL6 1462 aa29.71■■■□□ 2.35
NXF1-216ENST00000533499 TOP2BQ02880 1626 aa29.69■■■□□ 2.34
NXF1-216ENST00000533499 POLA1P09884 1462 aaPredicted RBP29.68■■■□□ 2.34
NXF1-216ENST00000533499 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
NXF1-216ENST00000533499 SOGA1O94964 1423 aa29.61■■■□□ 2.33
NXF1-216ENST00000533499 RAD54L2Q9Y4B4 1467 aa29.61■■■□□ 2.33
NXF1-216ENST00000533499 TRIM41Q8WV44 630 aa29.6■■■□□ 2.33
NXF1-216ENST00000533499 IFT140Q96RY7 1462 aa29.59■■■□□ 2.33
NXF1-216ENST00000533499 TARBP1Q13395 1621 aaKnown RBP29.49■■■□□ 2.31
NXF1-216ENST00000533499 CHIC1Q5VXU3 224 aa29.48■■■□□ 2.31
NXF1-216ENST00000533499 ZNF608Q9ULD9 1512 aaPredicted RBP29.45■■■□□ 2.31
NXF1-216ENST00000533499 TDRD9Q8NDG6 1382 aaKnown RBP29.42■■■□□ 2.3
NXF1-216ENST00000533499 AQRO60306 1485 aaKnown RBP eCLIP29.38■■■□□ 2.293e-10■■■■□ 22.5
NXF1-216ENST00000533499 ABCA10Q8WWZ4 1543 aa29.37■■■□□ 2.29
NXF1-216ENST00000533499 WDR97A6NE52 1622 aa29.36■■■□□ 2.29
NXF1-216ENST00000533499 EIF4G3O43432 1585 aaKnown RBP29.35■■■□□ 2.29
NXF1-216ENST00000533499 GAPVD1Q14C86 1478 aa29.26■■■□□ 2.27
NXF1-216ENST00000533499 ABCA5Q8WWZ7 1642 aa29.22■■■□□ 2.27
NXF1-216ENST00000533499 KIF27Q86VH2 1401 aa29.21■■■□□ 2.27
NXF1-216ENST00000533499 GRIN2BQ13224 1484 aa29.17■■■□□ 2.26
NXF1-216ENST00000533499 PBRM1Q86U86 1689 aa29.17■■■□□ 2.26
NXF1-216ENST00000533499 RUSC2Q8N2Y8 1516 aa29.11■■■□□ 2.25
NXF1-216ENST00000533499 SNAPC4Q5SXM2 1469 aa29.1■■■□□ 2.25
NXF1-216ENST00000533499 FBLN2P98095 1184 aa29.09■■■□□ 2.25
NXF1-216ENST00000533499 FAM9AQ8IZU1 332 aaPredicted RBP29.09■■■□□ 2.25
NXF1-216ENST00000533499 ERICH3Q5RHP9 1530 aa29.02■■■□□ 2.24
NXF1-216ENST00000533499 MAGI1Q96QZ7 1491 aaPredicted RBP29.02■■■□□ 2.24
NXF1-216ENST00000533499 CHMP7Q8WUX9 453 aaPredicted RBP28.99■■■□□ 2.23
NXF1-216ENST00000533499 IGF1RP08069 1367 aa28.99■■■□□ 2.23
NXF1-216ENST00000533499 ADAMTS12P58397 1594 aa28.94■■■□□ 2.22
NXF1-216ENST00000533499 CHD1O14646 1710 aa28.93■■■□□ 2.22
NXF1-216ENST00000533499 SYNJ2O15056 1496 aa28.91■■■□□ 2.22
NXF1-216ENST00000533499 FHAD1B1AJZ9 1412 aa28.91■■■□□ 2.22
NXF1-216ENST00000533499 EEA1Q15075 1411 aa28.9■■■□□ 2.22
NXF1-216ENST00000533499 CSRNP3Q8WYN3 585 aa28.89■■■□□ 2.22
NXF1-216ENST00000533499 CUL7Q14999 1698 aa28.89■■■□□ 2.21
NXF1-216ENST00000533499 CARMIL1Q5VZK9 1371 aa28.88■■■□□ 2.21
NXF1-216ENST00000533499 OSCARQ8IYS5 282 aa28.81■■■□□ 2.2
NXF1-216ENST00000533499 GRIN2AQ12879 1464 aa28.79■■■□□ 2.2
NXF1-216ENST00000533499 EHMT2Q96KQ7 1210 aa28.77■■■□□ 2.2
NXF1-216ENST00000533499 RAPGEF2Q9Y4G8 1499 aa28.73■■■□□ 2.19
NXF1-216ENST00000533499 PRXQ9BXM0 1461 aa28.69■■■□□ 2.18
NXF1-216ENST00000533499 CEP170Q5SW79 1584 aa28.63■■■□□ 2.17
NXF1-216ENST00000533499 NUP160Q12769 1436 aa28.59■■■□□ 2.17
NXF1-216ENST00000533499 KIF21BO75037 1637 aa28.58■■■□□ 2.17
NXF1-216ENST00000533499 UBTFP17480 764 aaKnown RBP28.53■■■□□ 2.16
NXF1-216ENST00000533499 CLASP1Q7Z460 1538 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms