RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 NISCHQ9Y2I1 1504 aa26.63■■□□□ 1.85
TRAPPC4-211ENST00000533012 CCDC180Q9P1Z9 1646 aa23.47■■□□□ 1.35
TRAPPC4-211ENST00000533012 ABCC9O60706 1549 aa22.85■■□□□ 1.25
TRAPPC4-211ENST00000533012 DCAF8L2P0C7V8 631 aa22.33■■□□□ 1.17
TRAPPC4-211ENST00000533012 ZCCHC6Q5VYS8 1495 aaKnown RBP22.2■■□□□ 1.14
TRAPPC4-211ENST00000533012 NACADO15069 1562 aa22.08■■□□□ 1.13
TRAPPC4-211ENST00000533012 RB1CC1Q8TDY2 1594 aa22.04■■□□□ 1.12
TRAPPC4-211ENST00000533012 MYO15BQ96JP2 1530 aa22.03■■□□□ 1.12
TRAPPC4-211ENST00000533012 DCAF1Q9Y4B6 1507 aa22.02■■□□□ 1.12
TRAPPC4-211ENST00000533012 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
TRAPPC4-211ENST00000533012 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
TRAPPC4-211ENST00000533012 UNC13AQ9UPW8 1703 aa21.41■■□□□ 1.02
TRAPPC4-211ENST00000533012 BICRAQ9NZM4 1560 aa21.32■■□□□ 1
TRAPPC4-211ENST00000533012 SHROOM4Q9ULL8 1493 aa21.26■□□□□ 0.99
TRAPPC4-211ENST00000533012 DNAJC5BQ9UF47 199 aa20.8■□□□□ 0.92
TRAPPC4-211ENST00000533012 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
TRAPPC4-211ENST00000533012 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
TRAPPC4-211ENST00000533012 CC2D2AQ9P2K1 1620 aa20.62■□□□□ 0.89
TRAPPC4-211ENST00000533012 BAZ1AQ9NRL2 1556 aaPredicted RBP20.61■□□□□ 0.89
TRAPPC4-211ENST00000533012 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
TRAPPC4-211ENST00000533012 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
TRAPPC4-211ENST00000533012 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
TRAPPC4-211ENST00000533012 NCAPD3P42695 1498 aa20.43■□□□□ 0.86
TRAPPC4-211ENST00000533012 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
TRAPPC4-211ENST00000533012 RSF1Q96T23 1441 aaPredicted RBP20.41■□□□□ 0.86
TRAPPC4-211ENST00000533012 PEG3Q9GZU2 1588 aa20.35■□□□□ 0.85
TRAPPC4-211ENST00000533012 BAZ1BQ9UIG0 1483 aaKnown RBP20.3■□□□□ 0.84
TRAPPC4-211ENST00000533012 WIZO95785 1651 aa20.27■□□□□ 0.84
TRAPPC4-211ENST00000533012 HMGXB3Q12766 1538 aa20.27■□□□□ 0.83
TRAPPC4-211ENST00000533012 SUPT5HO00267 1087 aaKnown RBP20.18■□□□□ 0.82
TRAPPC4-211ENST00000533012 TOP2AP11388 1531 aaKnown RBP20.09■□□□□ 0.81
TRAPPC4-211ENST00000533012 CCDC88BA6NC98 1476 aa19.91■□□□□ 0.78
TRAPPC4-211ENST00000533012 CADPSQ9ULU8 1353 aa19.87■□□□□ 0.77
TRAPPC4-211ENST00000533012 NESP48681 1621 aa19.81■□□□□ 0.76
TRAPPC4-211ENST00000533012 LAMC3Q9Y6N6 1575 aa19.79■□□□□ 0.76
TRAPPC4-211ENST00000533012 CFTRP13569 1480 aa19.76■□□□□ 0.75
TRAPPC4-211ENST00000533012 PDS5BQ9NTI5 1447 aa19.73■□□□□ 0.75
TRAPPC4-211ENST00000533012 ERCC6Q03468 1493 aa19.69■□□□□ 0.74
TRAPPC4-211ENST00000533012 FANCD2Q9BXW9 1451 aa19.6■□□□□ 0.73
TRAPPC4-211ENST00000533012 CEP164Q9UPV0 1460 aa19.54■□□□□ 0.72
TRAPPC4-211ENST00000533012 KIF21AQ7Z4S6 1674 aa19.49■□□□□ 0.71
TRAPPC4-211ENST00000533012 MRC2Q9UBG0 1479 aa19.46■□□□□ 0.71
TRAPPC4-211ENST00000533012 PRDM2Q13029 1718 aa19.45■□□□□ 0.7
TRAPPC4-211ENST00000533012 THOC2Q8NI27 1593 aaKnown RBP19.38■□□□□ 0.69
TRAPPC4-211ENST00000533012 CUX2O14529 1486 aa19.36■□□□□ 0.69
TRAPPC4-211ENST00000533012 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
TRAPPC4-211ENST00000533012 WDR62O43379 1518 aa19.35■□□□□ 0.69
TRAPPC4-211ENST00000533012 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
TRAPPC4-211ENST00000533012 TOPBP1Q92547 1522 aa19.29■□□□□ 0.68
TRAPPC4-211ENST00000533012 DNMBPQ6XZF7 1577 aa19.27■□□□□ 0.67
TRAPPC4-211ENST00000533012 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
TRAPPC4-211ENST00000533012 CUX1P39880 1505 aa19.22■□□□□ 0.67
TRAPPC4-211ENST00000533012 SOGA1O94964 1423 aa19.15■□□□□ 0.66
TRAPPC4-211ENST00000533012 POLA1P09884 1462 aaPredicted RBP19.15■□□□□ 0.66
TRAPPC4-211ENST00000533012 FGD5Q6ZNL6 1462 aa19.14■□□□□ 0.65
TRAPPC4-211ENST00000533012 IFT140Q96RY7 1462 aa19.14■□□□□ 0.65
TRAPPC4-211ENST00000533012 TOP2BQ02880 1626 aa19.11■□□□□ 0.65
TRAPPC4-211ENST00000533012 SYNJ1O43426 1573 aa19.1■□□□□ 0.65
TRAPPC4-211ENST00000533012 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
TRAPPC4-211ENST00000533012 TRIM41Q8WV44 630 aa19.07■□□□□ 0.64
TRAPPC4-211ENST00000533012 BIVM-ERCC5R4GMW8 1640 aa19.07■□□□□ 0.64
TRAPPC4-211ENST00000533012 TARBP1Q13395 1621 aaKnown RBP19.02■□□□□ 0.64
TRAPPC4-211ENST00000533012 ZNF608Q9ULD9 1512 aaPredicted RBP19■□□□□ 0.63
TRAPPC4-211ENST00000533012 TDRD9Q8NDG6 1382 aaKnown RBP19■□□□□ 0.63
TRAPPC4-211ENST00000533012 AQRO60306 1485 aaKnown RBP eCLIP18.98■□□□□ 0.631e-6■■■■□ 24.3
TRAPPC4-211ENST00000533012 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
TRAPPC4-211ENST00000533012 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
TRAPPC4-211ENST00000533012 GAPVD1Q14C86 1478 aa18.89■□□□□ 0.61
TRAPPC4-211ENST00000533012 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
TRAPPC4-211ENST00000533012 EIF4G3O43432 1585 aaKnown RBP18.88■□□□□ 0.61
TRAPPC4-211ENST00000533012 GRIN2BQ13224 1484 aa18.85■□□□□ 0.61
TRAPPC4-211ENST00000533012 KIF27Q86VH2 1401 aa18.85■□□□□ 0.61
TRAPPC4-211ENST00000533012 ABCA5Q8WWZ7 1642 aa18.8■□□□□ 0.6
TRAPPC4-211ENST00000533012 FBLN2P98095 1184 aa18.79■□□□□ 0.6
TRAPPC4-211ENST00000533012 CHMP7Q8WUX9 453 aaPredicted RBP18.77■□□□□ 0.6
TRAPPC4-211ENST00000533012 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.59
TRAPPC4-211ENST00000533012 IGF1RP08069 1367 aa18.76■□□□□ 0.59
TRAPPC4-211ENST00000533012 MAGI1Q96QZ7 1491 aaPredicted RBP18.76■□□□□ 0.59
TRAPPC4-211ENST00000533012 ERICH3Q5RHP9 1530 aa18.74■□□□□ 0.59
TRAPPC4-211ENST00000533012 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
TRAPPC4-211ENST00000533012 RUSC2Q8N2Y8 1516 aa18.71■□□□□ 0.59
TRAPPC4-211ENST00000533012 PBRM1Q86U86 1689 aa18.7■□□□□ 0.58
TRAPPC4-211ENST00000533012 FHAD1B1AJZ9 1412 aa18.69■□□□□ 0.58
TRAPPC4-211ENST00000533012 SYNJ2O15056 1496 aa18.69■□□□□ 0.58
TRAPPC4-211ENST00000533012 FAM9AQ8IZU1 332 aaPredicted RBP18.66■□□□□ 0.58
TRAPPC4-211ENST00000533012 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
TRAPPC4-211ENST00000533012 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
TRAPPC4-211ENST00000533012 EEA1Q15075 1411 aa18.65■□□□□ 0.58
TRAPPC4-211ENST00000533012 ADAMTS12P58397 1594 aa18.61■□□□□ 0.57
TRAPPC4-211ENST00000533012 GRIN2AQ12879 1464 aa18.58■□□□□ 0.57
TRAPPC4-211ENST00000533012 CUL7Q14999 1698 aa18.57■□□□□ 0.56
TRAPPC4-211ENST00000533012 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
TRAPPC4-211ENST00000533012 CHD1O14646 1710 aa18.55■□□□□ 0.56
TRAPPC4-211ENST00000533012 RAPGEF2Q9Y4G8 1499 aa18.53■□□□□ 0.56
TRAPPC4-211ENST00000533012 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
TRAPPC4-211ENST00000533012 NUP160Q12769 1436 aa18.49■□□□□ 0.55
TRAPPC4-211ENST00000533012 CEP170Q5SW79 1584 aa18.44■□□□□ 0.54
TRAPPC4-211ENST00000533012 JPH4Q96JJ6 628 aa18.42■□□□□ 0.54
TRAPPC4-211ENST00000533012 CLASP1Q7Z460 1538 aa18.41■□□□□ 0.54
TRAPPC4-211ENST00000533012 KIAA0586Q9BVV6 1533 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms