RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, humanhuman

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-209ENST00000531474 NISCHQ9Y2I1 1504 aa22.22■■□□□ 1.15
NXF1-209ENST00000531474 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
NXF1-209ENST00000531474 ABCC9O60706 1549 aa19.06■□□□□ 0.64
NXF1-209ENST00000531474 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
NXF1-209ENST00000531474 DCAF8L2P0C7V8 631 aa18.54■□□□□ 0.56
NXF1-209ENST00000531474 NACADO15069 1562 aa18.42■□□□□ 0.54
NXF1-209ENST00000531474 RB1CC1Q8TDY2 1594 aa18.4■□□□□ 0.54
NXF1-209ENST00000531474 DCAF1Q9Y4B6 1507 aa18.38■□□□□ 0.53
NXF1-209ENST00000531474 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
NXF1-209ENST00000531474 SCRIBQ14160 1630 aa18■□□□□ 0.47
NXF1-209ENST00000531474 UNC13AQ9UPW8 1703 aa17.94■□□□□ 0.46
NXF1-209ENST00000531474 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
NXF1-209ENST00000531474 BICRAQ9NZM4 1560 aa17.83■□□□□ 0.44
NXF1-209ENST00000531474 SHROOM4Q9ULL8 1493 aa17.76■□□□□ 0.43
NXF1-209ENST00000531474 EIF4G1Q04637 1599 aaKnown RBP17.35■□□□□ 0.37
NXF1-209ENST00000531474 CECR2Q9BXF3 1484 aa17.31■□□□□ 0.36
NXF1-209ENST00000531474 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
NXF1-209ENST00000531474 CC2D2AQ9P2K1 1620 aa17.22■□□□□ 0.35
NXF1-209ENST00000531474 BAZ1AQ9NRL2 1556 aaPredicted RBP17.22■□□□□ 0.35
NXF1-209ENST00000531474 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
NXF1-209ENST00000531474 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
NXF1-209ENST00000531474 ATAD2BQ9ULI0 1458 aa17.05■□□□□ 0.32
NXF1-209ENST00000531474 SMARCA2P51531 1590 aa17.05■□□□□ 0.32
NXF1-209ENST00000531474 RSF1Q96T23 1441 aaPredicted RBP17.03■□□□□ 0.32
NXF1-209ENST00000531474 PEG3Q9GZU2 1588 aa17■□□□□ 0.31
NXF1-209ENST00000531474 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
NXF1-209ENST00000531474 WIZO95785 1651 aa16.97■□□□□ 0.31
NXF1-209ENST00000531474 BAZ1BQ9UIG0 1483 aaKnown RBP16.95■□□□□ 0.3
NXF1-209ENST00000531474 HMGXB3Q12766 1538 aa16.94■□□□□ 0.3
NXF1-209ENST00000531474 TOP2AP11388 1531 aaKnown RBP16.81■□□□□ 0.28
NXF1-209ENST00000531474 SUPT5HO00267 1087 aaKnown RBP16.81■□□□□ 0.28
NXF1-209ENST00000531474 CHIC1Q5VXU3 224 aa16.67■□□□□ 0.26
NXF1-209ENST00000531474 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
NXF1-209ENST00000531474 NESP48681 1621 aa16.55■□□□□ 0.24
NXF1-209ENST00000531474 CADPSQ9ULU8 1353 aa16.52■□□□□ 0.24
NXF1-209ENST00000531474 LAMC3Q9Y6N6 1575 aa16.51■□□□□ 0.23
NXF1-209ENST00000531474 CFTRP13569 1480 aa16.47■□□□□ 0.23
NXF1-209ENST00000531474 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
NXF1-209ENST00000531474 PDS5BQ9NTI5 1447 aa16.42■□□□□ 0.22
NXF1-209ENST00000531474 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
NXF1-209ENST00000531474 KIF21AQ7Z4S6 1674 aa16.34■□□□□ 0.21
NXF1-209ENST00000531474 PRDM2Q13029 1718 aa16.33■□□□□ 0.2
NXF1-209ENST00000531474 CEP164Q9UPV0 1460 aa16.32■□□□□ 0.2
NXF1-209ENST00000531474 MRC2Q9UBG0 1479 aa16.24■□□□□ 0.19
NXF1-209ENST00000531474 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
NXF1-209ENST00000531474 WDR62O43379 1518 aa16.17■□□□□ 0.18
NXF1-209ENST00000531474 URB2Q14146 1524 aaKnown RBP16.17■□□□□ 0.18
NXF1-209ENST00000531474 CUX2O14529 1486 aa16.13■□□□□ 0.17
NXF1-209ENST00000531474 TOPBP1Q92547 1522 aa16.11■□□□□ 0.17
NXF1-209ENST00000531474 DNMBPQ6XZF7 1577 aa16.11■□□□□ 0.17
NXF1-209ENST00000531474 ABCC8Q09428 1581 aa16.1■□□□□ 0.17
NXF1-209ENST00000531474 CUX1P39880 1505 aa16.08■□□□□ 0.16
NXF1-209ENST00000531474 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
NXF1-209ENST00000531474 SYNJ1O43426 1573 aa16.01■□□□□ 0.15
NXF1-209ENST00000531474 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
NXF1-209ENST00000531474 FGD5Q6ZNL6 1462 aa16■□□□□ 0.15
NXF1-209ENST00000531474 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
NXF1-209ENST00000531474 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
NXF1-209ENST00000531474 BIVM-ERCC5R4GMW8 1640 aa15.97■□□□□ 0.15
NXF1-209ENST00000531474 IFT140Q96RY7 1462 aa15.96■□□□□ 0.14
NXF1-209ENST00000531474 SOGA1O94964 1423 aa15.94■□□□□ 0.14
NXF1-209ENST00000531474 RAD54L2Q9Y4B4 1467 aa15.93■□□□□ 0.14
NXF1-209ENST00000531474 TARBP1Q13395 1621 aaKnown RBP15.9■□□□□ 0.14
NXF1-209ENST00000531474 ZNF608Q9ULD9 1512 aaPredicted RBP15.87■□□□□ 0.13
NXF1-209ENST00000531474 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
NXF1-209ENST00000531474 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
NXF1-209ENST00000531474 ABCA10Q8WWZ4 1543 aa15.83■□□□□ 0.12
NXF1-209ENST00000531474 EIF4G3O43432 1585 aaKnown RBP15.82■□□□□ 0.12
NXF1-209ENST00000531474 WDR97A6NE52 1622 aa15.82■□□□□ 0.12
NXF1-209ENST00000531474 AQRO60306 1485 aaKnown RBP eCLIP15.81■□□□□ 0.12
NXF1-209ENST00000531474 ABCA5Q8WWZ7 1642 aa15.76■□□□□ 0.11
NXF1-209ENST00000531474 GAPVD1Q14C86 1478 aa15.75■□□□□ 0.11
NXF1-209ENST00000531474 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
NXF1-209ENST00000531474 KIF27Q86VH2 1401 aa15.71■□□□□ 0.11
NXF1-209ENST00000531474 SNAPC4Q5SXM2 1469 aa15.69■□□□□ 0.1
NXF1-209ENST00000531474 PBRM1Q86U86 1689 aa15.69■□□□□ 0.1
NXF1-209ENST00000531474 MAGI1Q96QZ7 1491 aaPredicted RBP15.65■□□□□ 0.1
NXF1-209ENST00000531474 ERICH3Q5RHP9 1530 aa15.64■□□□□ 0.09
NXF1-209ENST00000531474 RUSC2Q8N2Y8 1516 aa15.63■□□□□ 0.09
NXF1-209ENST00000531474 FBLN2P98095 1184 aa15.6■□□□□ 0.09
NXF1-209ENST00000531474 ADAMTS12P58397 1594 aa15.6■□□□□ 0.09
NXF1-209ENST00000531474 IGF1RP08069 1367 aa15.6■□□□□ 0.09
NXF1-209ENST00000531474 SYNJ2O15056 1496 aa15.59■□□□□ 0.09
NXF1-209ENST00000531474 CHMP7Q8WUX9 453 aaPredicted RBP15.58■□□□□ 0.08
NXF1-209ENST00000531474 FHAD1B1AJZ9 1412 aa15.58■□□□□ 0.08
NXF1-209ENST00000531474 CHD1O14646 1710 aa15.56■□□□□ 0.08
NXF1-209ENST00000531474 CUL7Q14999 1698 aa15.55■□□□□ 0.08
NXF1-209ENST00000531474 EEA1Q15075 1411 aa15.55■□□□□ 0.08
NXF1-209ENST00000531474 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
NXF1-209ENST00000531474 CARMIL1Q5VZK9 1371 aa15.53■□□□□ 0.08
NXF1-209ENST00000531474 GRIN2AQ12879 1464 aa15.52■□□□□ 0.07
NXF1-209ENST00000531474 OSCARQ8IYS5 282 aa15.51■□□□□ 0.07
NXF1-209ENST00000531474 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
NXF1-209ENST00000531474 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.06
NXF1-209ENST00000531474 PRXQ9BXM0 1461 aa15.45■□□□□ 0.06
NXF1-209ENST00000531474 CEP170Q5SW79 1584 aa15.43■□□□□ 0.06
NXF1-209ENST00000531474 NUP160Q12769 1436 aa15.43■□□□□ 0.06
NXF1-209ENST00000531474 CLASP1Q7Z460 1538 aa15.4■□□□□ 0.06
NXF1-209ENST00000531474 KIF21BO75037 1637 aa15.37■□□□□ 0.05
NXF1-209ENST00000531474 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 154.7 ms