RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 NISCHQ9Y2I1 1504 aa10.8□□□□□ -0.68
USP47-208ENST00000529813 ABCC9O60706 1549 aa9.6□□□□□ -0.87
USP47-208ENST00000529813 DCAF8L2P0C7V8 631 aa9.5□□□□□ -0.89
USP47-208ENST00000529813 CCDC180Q9P1Z9 1646 aa9.44□□□□□ -0.9
USP47-208ENST00000529813 PABPN1Q86U42 306 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP47-208ENST00000529813 RB1CC1Q8TDY2 1594 aa9.04□□□□□ -0.96
USP47-208ENST00000529813 NACADO15069 1562 aa8.98□□□□□ -0.97
USP47-208ENST00000529813 ZCCHC6Q5VYS8 1495 aaKnown RBP8.95□□□□□ -0.98
USP47-208ENST00000529813 SHROOM4Q9ULL8 1493 aa8.87□□□□□ -0.99
USP47-208ENST00000529813 SCRIBQ14160 1630 aa8.85□□□□□ -0.99
USP47-208ENST00000529813 DNAJC5BQ9UF47 199 aa8.85□□□□□ -0.99
USP47-208ENST00000529813 MYO15BQ96JP2 1530 aa8.81□□□□□ -1
USP47-208ENST00000529813 DCAF1Q9Y4B6 1507 aa8.79□□□□□ -1
USP47-208ENST00000529813 BICRAQ9NZM4 1560 aa8.71□□□□□ -1.01
USP47-208ENST00000529813 UNC13AQ9UPW8 1703 aa8.7□□□□□ -1.02
USP47-208ENST00000529813 CECR2Q9BXF3 1484 aa8.57□□□□□ -1.04
USP47-208ENST00000529813 EIF4G1Q04637 1599 aaKnown RBP8.55□□□□□ -1.04
USP47-208ENST00000529813 CC2D2AQ9P2K1 1620 aa8.53□□□□□ -1.04
USP47-208ENST00000529813 SUPT5HO00267 1087 aaKnown RBP8.39□□□□□ -1.07
USP47-208ENST00000529813 ATAD2BQ9ULI0 1458 aa8.38□□□□□ -1.07
USP47-208ENST00000529813 MROH2BQ7Z745 1585 aa8.37□□□□□ -1.07
USP47-208ENST00000529813 BAZ1AQ9NRL2 1556 aaPredicted RBP8.37□□□□□ -1.07
USP47-208ENST00000529813 AEBP2Q6ZN18 517 aaPredicted RBP8.37□□□□□ -1.07
USP47-208ENST00000529813 SMARCA4P51532 1647 aa8.36□□□□□ -1.07
USP47-208ENST00000529813 BAZ1BQ9UIG0 1483 aaKnown RBP8.35□□□□□ -1.07
USP47-208ENST00000529813 NCAPD3P42695 1498 aa8.33□□□□□ -1.08
USP47-208ENST00000529813 SMARCA2P51531 1590 aa8.32□□□□□ -1.08
USP47-208ENST00000529813 ERCC6Q03468 1493 aa8.29□□□□□ -1.08
USP47-208ENST00000529813 RSF1Q96T23 1441 aaPredicted RBP8.29□□□□□ -1.08
USP47-208ENST00000529813 WIZO95785 1651 aa8.26□□□□□ -1.09
USP47-208ENST00000529813 NESP48681 1621 aa8.26□□□□□ -1.09
USP47-208ENST00000529813 HMGXB3Q12766 1538 aa8.22□□□□□ -1.09
USP47-208ENST00000529813 CHIC1Q5VXU3 224 aa8.2□□□□□ -1.1
USP47-208ENST00000529813 CADPSQ9ULU8 1353 aa8.18□□□□□ -1.1
USP47-208ENST00000529813 PEG3Q9GZU2 1588 aa8.16□□□□□ -1.1
USP47-208ENST00000529813 PDS5BQ9NTI5 1447 aa8.16□□□□□ -1.1
USP47-208ENST00000529813 TOP2AP11388 1531 aaKnown RBP8.13□□□□□ -1.11
USP47-208ENST00000529813 CCDC88BA6NC98 1476 aa8.12□□□□□ -1.11
USP47-208ENST00000529813 FANCD2Q9BXW9 1451 aa8.08□□□□□ -1.12
USP47-208ENST00000529813 LAMC3Q9Y6N6 1575 aa8.08□□□□□ -1.12
USP47-208ENST00000529813 CEP164Q9UPV0 1460 aa8.07□□□□□ -1.12
USP47-208ENST00000529813 CFTRP13569 1480 aa8.05□□□□□ -1.12
USP47-208ENST00000529813 MRC2Q9UBG0 1479 aa8.03□□□□□ -1.12
USP47-208ENST00000529813 CUX2O14529 1486 aa8.02□□□□□ -1.13
USP47-208ENST00000529813 FBLN2P98095 1184 aa8.02□□□□□ -1.13
USP47-208ENST00000529813 KIF21AQ7Z4S6 1674 aa8.02□□□□□ -1.13
USP47-208ENST00000529813 URB2Q14146 1524 aaKnown RBP7.96□□□□□ -1.13
USP47-208ENST00000529813 THOC2Q8NI27 1593 aaKnown RBP7.95□□□□□ -1.14
USP47-208ENST00000529813 DNAJC5Q9H3Z4 198 aa7.95□□□□□ -1.14
USP47-208ENST00000529813 TDRD9Q8NDG6 1382 aaKnown RBP7.93□□□□□ -1.14
USP47-208ENST00000529813 WDR62O43379 1518 aa7.91□□□□□ -1.14
USP47-208ENST00000529813 TOPBP1Q92547 1522 aa7.91□□□□□ -1.14
USP47-208ENST00000529813 TRIM41Q8WV44 630 aa7.91□□□□□ -1.14
USP47-208ENST00000529813 RAD54L2Q9Y4B4 1467 aa7.9□□□□□ -1.14
USP47-208ENST00000529813 SOGA1O94964 1423 aa7.9□□□□□ -1.14
USP47-208ENST00000529813 AQRO60306 1485 aaKnown RBP eCLIP7.9□□□□□ -1.15
USP47-208ENST00000529813 OSCARQ8IYS5 282 aa7.89□□□□□ -1.15
USP47-208ENST00000529813 ZNF608Q9ULD9 1512 aaPredicted RBP7.89□□□□□ -1.15
USP47-208ENST00000529813 CHMP7Q8WUX9 453 aaPredicted RBP7.88□□□□□ -1.15
USP47-208ENST00000529813 ABCC8Q09428 1581 aa7.87□□□□□ -1.15
USP47-208ENST00000529813 IFT140Q96RY7 1462 aa7.86□□□□□ -1.15
USP47-208ENST00000529813 FGD5Q6ZNL6 1462 aa7.86□□□□□ -1.15
USP47-208ENST00000529813 WRNQ14191 1432 aaPredicted RBP eCLIP7.86□□□□□ -1.15
USP47-208ENST00000529813 POLA1P09884 1462 aaPredicted RBP7.86□□□□□ -1.15
USP47-208ENST00000529813 DNMBPQ6XZF7 1577 aa7.85□□□□□ -1.15
USP47-208ENST00000529813 CUX1P39880 1505 aa7.84□□□□□ -1.16
USP47-208ENST00000529813 EHMT2Q96KQ7 1210 aa7.83□□□□□ -1.16
USP47-208ENST00000529813 FAM9AQ8IZU1 332 aaPredicted RBP7.81□□□□□ -1.16
USP47-208ENST00000529813 TTBK1Q5TCY1 1321 aaPredicted RBP7.81□□□□□ -1.16
USP47-208ENST00000529813 CYB5RLQ6IPT4 315 aa7.79□□□□□ -1.16
USP47-208ENST00000529813 PRDM2Q13029 1718 aa7.79□□□□□ -1.16
USP47-208ENST00000529813 GAPVD1Q14C86 1478 aa7.77□□□□□ -1.17
USP47-208ENST00000529813 SNAPC4Q5SXM2 1469 aa7.77□□□□□ -1.17
USP47-208ENST00000529813 EIF4G3O43432 1585 aaKnown RBP7.76□□□□□ -1.17
USP47-208ENST00000529813 SYNJ1O43426 1573 aa7.76□□□□□ -1.17
USP47-208ENST00000529813 RANGAP1P46060 587 aaPredicted RBP7.75□□□□□ -1.17
USP47-208ENST00000529813 GRIN2BQ13224 1484 aa7.75□□□□□ -1.17
USP47-208ENST00000529813 TARBP1Q13395 1621 aaKnown RBP7.73□□□□□ -1.17
USP47-208ENST00000529813 TRHP20396 242 aaPredicted RBP7.72□□□□□ -1.17
USP47-208ENST00000529813 ABCA10Q8WWZ4 1543 aa7.71□□□□□ -1.18
USP47-208ENST00000529813 TOP2BQ02880 1626 aa7.71□□□□□ -1.18
USP47-208ENST00000529813 KIF27Q86VH2 1401 aa7.7□□□□□ -1.18
USP47-208ENST00000529813 SYNJ2O15056 1496 aa7.68□□□□□ -1.18
USP47-208ENST00000529813 MAGI1Q96QZ7 1491 aaPredicted RBP7.68□□□□□ -1.18
USP47-208ENST00000529813 JPH4Q96JJ6 628 aa7.66□□□□□ -1.18
USP47-208ENST00000529813 IGF1RP08069 1367 aa7.66□□□□□ -1.18
USP47-208ENST00000529813 CARMIL1Q5VZK9 1371 aa7.66□□□□□ -1.18
USP47-208ENST00000529813 FHAD1B1AJZ9 1412 aa7.66□□□□□ -1.18
USP47-208ENST00000529813 RUSC2Q8N2Y8 1516 aa7.65□□□□□ -1.19
USP47-208ENST00000529813 BIVM-ERCC5R4GMW8 1640 aa7.64□□□□□ -1.19
USP47-208ENST00000529813 CHD1O14646 1710 aa7.64□□□□□ -1.19
USP47-208ENST00000529813 P3H3Q8IVL6 736 aa7.64□□□□□ -1.19
USP47-208ENST00000529813 GRIN2AQ12879 1464 aa7.64□□□□□ -1.19
USP47-208ENST00000529813 ARHGEF11O15085 1522 aa7.63□□□□□ -1.19
USP47-208ENST00000529813 UBTFP17480 764 aaKnown RBP7.63□□□□□ -1.19
USP47-208ENST00000529813 CSRNP3Q8WYN3 585 aa7.63□□□□□ -1.19
USP47-208ENST00000529813 ARID3CA6NKF2 412 aa7.62□□□□□ -1.19
USP47-208ENST00000529813 ABCA5Q8WWZ7 1642 aa7.61□□□□□ -1.19
USP47-208ENST00000529813 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
USP47-208ENST00000529813 PBRM1Q86U86 1689 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms