RNA–Protein interactions for RNA: ENST00000529371.5

LTBP3-213, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 2

Gene LTBP3, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-213ENST00000529371 NISCHQ9Y2I1 1504 aa59.39■■■■■ 7.1
LTBP3-213ENST00000529371 CCDC180Q9P1Z9 1646 aa52.64■■■■■ 6.02
LTBP3-213ENST00000529371 ABCC9O60706 1549 aa51.03■■■■■ 5.76
LTBP3-213ENST00000529371 ZCCHC6Q5VYS8 1495 aaKnown RBP49.6■■■■■ 5.53
LTBP3-213ENST00000529371 DCAF8L2P0C7V8 631 aa49.51■■■■■ 5.52
LTBP3-213ENST00000529371 NACADO15069 1562 aa49.36■■■■■ 5.49
LTBP3-213ENST00000529371 RB1CC1Q8TDY2 1594 aa49.32■■■■■ 5.49
LTBP3-213ENST00000529371 MYO15BQ96JP2 1530 aa49.19■■■■■ 5.47
LTBP3-213ENST00000529371 DCAF1Q9Y4B6 1507 aa49.17■■■■■ 5.46
LTBP3-213ENST00000529371 UNC13AQ9UPW8 1703 aa48.12■■■■■ 5.29
LTBP3-213ENST00000529371 SCRIBQ14160 1630 aa48.08■■■■■ 5.29
LTBP3-213ENST00000529371 PABPN1Q86U42 306 aaKnown RBP eCLIP47.73■■■■■ 5.232e-8■■■□□ 15.8
LTBP3-213ENST00000529371 BICRAQ9NZM4 1560 aa47.71■■■■■ 5.23
LTBP3-213ENST00000529371 SHROOM4Q9ULL8 1493 aa47.35■■■■■ 5.17
LTBP3-213ENST00000529371 EIF4G1Q04637 1599 aaKnown RBP46.47■■■■■ 5.03
LTBP3-213ENST00000529371 DNAJC5BQ9UF47 199 aa46.23■■■■■ 4.99
LTBP3-213ENST00000529371 CECR2Q9BXF3 1484 aa46.19■■■■■ 4.98
LTBP3-213ENST00000529371 CC2D2AQ9P2K1 1620 aa46.16■■■■■ 4.98
LTBP3-213ENST00000529371 BAZ1AQ9NRL2 1556 aaPredicted RBP46.05■■■■■ 4.96
LTBP3-213ENST00000529371 SMARCA4P51532 1647 aa46.01■■■■■ 4.96
LTBP3-213ENST00000529371 MROH2BQ7Z745 1585 aa45.77■■■■■ 4.92
LTBP3-213ENST00000529371 SMARCA2P51531 1590 aa45.65■■■■■ 4.9
LTBP3-213ENST00000529371 ATAD2BQ9ULI0 1458 aa45.61■■■■■ 4.89
LTBP3-213ENST00000529371 PEG3Q9GZU2 1588 aa45.51■■■■■ 4.88
LTBP3-213ENST00000529371 NCAPD3P42695 1498 aa45.49■■■■■ 4.87
LTBP3-213ENST00000529371 RSF1Q96T23 1441 aaPredicted RBP45.43■■■■■ 4.86
LTBP3-213ENST00000529371 HMGXB3Q12766 1538 aa45.37■■■■■ 4.85
LTBP3-213ENST00000529371 BAZ1BQ9UIG0 1483 aaKnown RBP45.33■■■■■ 4.85
LTBP3-213ENST00000529371 WIZO95785 1651 aa45.32■■■■■ 4.85
LTBP3-213ENST00000529371 TOP2AP11388 1531 aaKnown RBP44.91■■■■■ 4.78
LTBP3-213ENST00000529371 SUPT5HO00267 1087 aaKnown RBP44.74■■■■■ 4.75
LTBP3-213ENST00000529371 CCDC88BA6NC98 1476 aa44.34■■■■■ 4.69
LTBP3-213ENST00000529371 LAMC3Q9Y6N6 1575 aa44.27■■■■■ 4.68
LTBP3-213ENST00000529371 NESP48681 1621 aa44.25■■■■■ 4.67
LTBP3-213ENST00000529371 CADPSQ9ULU8 1353 aa44.22■■■■■ 4.67
LTBP3-213ENST00000529371 CFTRP13569 1480 aa44.05■■■■■ 4.64
LTBP3-213ENST00000529371 ERCC6Q03468 1493 aa44.02■■■■■ 4.64
LTBP3-213ENST00000529371 PDS5BQ9NTI5 1447 aa43.99■■■■■ 4.63
LTBP3-213ENST00000529371 PRDM2Q13029 1718 aa43.82■■■■■ 4.6
LTBP3-213ENST00000529371 KIF21AQ7Z4S6 1674 aa43.78■■■■■ 4.6
LTBP3-213ENST00000529371 FANCD2Q9BXW9 1451 aa43.75■■■■■ 4.59
LTBP3-213ENST00000529371 CEP164Q9UPV0 1460 aa43.68■■■■■ 4.58
LTBP3-213ENST00000529371 THOC2Q8NI27 1593 aaKnown RBP43.5■■■■■ 4.55
LTBP3-213ENST00000529371 MRC2Q9UBG0 1479 aa43.5■■■■■ 4.55
LTBP3-213ENST00000529371 CUX2O14529 1486 aa43.32■■■■■ 4.52
LTBP3-213ENST00000529371 WDR62O43379 1518 aa43.31■■■■■ 4.52
LTBP3-213ENST00000529371 URB2Q14146 1524 aaKnown RBP43.23■■■■■ 4.51
LTBP3-213ENST00000529371 ABCC8Q09428 1581 aa43.16■■■■■ 4.5
LTBP3-213ENST00000529371 DNMBPQ6XZF7 1577 aa43.11■■■■■ 4.49
LTBP3-213ENST00000529371 TOPBP1Q92547 1522 aa43.09■■■■■ 4.49
LTBP3-213ENST00000529371 CUX1P39880 1505 aa42.92■■■■■ 4.46
LTBP3-213ENST00000529371 WRNQ14191 1432 aaPredicted RBP eCLIP42.88■■■■■ 4.46
LTBP3-213ENST00000529371 POLA1P09884 1462 aaPredicted RBP42.74■■■■■ 4.43
LTBP3-213ENST00000529371 FGD5Q6ZNL6 1462 aa42.74■■■■■ 4.43
LTBP3-213ENST00000529371 IFT140Q96RY7 1462 aa42.73■■■■■ 4.43
LTBP3-213ENST00000529371 SYNJ1O43426 1573 aa42.71■■■■■ 4.43
LTBP3-213ENST00000529371 TOP2BQ02880 1626 aa42.71■■■■■ 4.43
LTBP3-213ENST00000529371 BIVM-ERCC5R4GMW8 1640 aa42.71■■■■■ 4.43
LTBP3-213ENST00000529371 SOGA1O94964 1423 aa42.6■■■■■ 4.41
LTBP3-213ENST00000529371 RAD54L2Q9Y4B4 1467 aa42.55■■■■■ 4.4
LTBP3-213ENST00000529371 TARBP1Q13395 1621 aaKnown RBP42.54■■■■■ 4.4
LTBP3-213ENST00000529371 ZNF608Q9ULD9 1512 aaPredicted RBP42.42■■■■■ 4.38
LTBP3-213ENST00000529371 ABCA10Q8WWZ4 1543 aa42.34■■■■■ 4.37
LTBP3-213ENST00000529371 EIF4G3O43432 1585 aaKnown RBP42.34■■■■■ 4.37
LTBP3-213ENST00000529371 WDR97A6NE52 1622 aa42.34■■■■■ 4.37
LTBP3-213ENST00000529371 TDRD9Q8NDG6 1382 aaKnown RBP42.27■■■■■ 4.36
LTBP3-213ENST00000529371 AQRO60306 1485 aaKnown RBP eCLIP42.26■■■■■ 4.36
LTBP3-213ENST00000529371 TRIM41Q8WV44 630 aa42.24■■■■■ 4.35
LTBP3-213ENST00000529371 GAPVD1Q14C86 1478 aa42.13■■■■■ 4.34
LTBP3-213ENST00000529371 ABCA5Q8WWZ7 1642 aa42.13■■■■■ 4.33
LTBP3-213ENST00000529371 GRIN2BQ13224 1484 aa42.06■■■■■ 4.32
LTBP3-213ENST00000529371 PBRM1Q86U86 1689 aa42.02■■■■■ 4.32
LTBP3-213ENST00000529371 KIF27Q86VH2 1401 aa41.97■■■■■ 4.31
LTBP3-213ENST00000529371 CHIC1Q5VXU3 224 aa41.97■■■■■ 4.31
LTBP3-213ENST00000529371 SNAPC4Q5SXM2 1469 aa41.93■■■■■ 4.3
LTBP3-213ENST00000529371 MAGI1Q96QZ7 1491 aaPredicted RBP41.91■■■■■ 4.3
LTBP3-213ENST00000529371 ERICH3Q5RHP9 1530 aa41.86■■■■■ 4.29
LTBP3-213ENST00000529371 FBLN2P98095 1184 aa41.75■■■■■ 4.27
LTBP3-213ENST00000529371 SYNJ2O15056 1496 aa41.72■■■■■ 4.27
LTBP3-213ENST00000529371 ADAMTS12P58397 1594 aa41.71■■■■■ 4.27
LTBP3-213ENST00000529371 CHD1O14646 1710 aa41.7■■■■■ 4.27
LTBP3-213ENST00000529371 CHMP7Q8WUX9 453 aaPredicted RBP41.7■■■■■ 4.27
LTBP3-213ENST00000529371 FHAD1B1AJZ9 1412 aa41.67■■■■■ 4.26
LTBP3-213ENST00000529371 IGF1RP08069 1367 aa41.64■■■■■ 4.26
LTBP3-213ENST00000529371 RUSC2Q8N2Y8 1516 aa41.64■■■■■ 4.26
LTBP3-213ENST00000529371 CUL7Q14999 1698 aa41.61■■■■■ 4.25
LTBP3-213ENST00000529371 OSCARQ8IYS5 282 aa41.6■■■■■ 4.25
LTBP3-213ENST00000529371 EEA1Q15075 1411 aa41.52■■■■■ 4.24
LTBP3-213ENST00000529371 GRIN2AQ12879 1464 aa41.51■■■■■ 4.24
LTBP3-213ENST00000529371 CARMIL1Q5VZK9 1371 aa41.47■■■■■ 4.23
LTBP3-213ENST00000529371 FAM9AQ8IZU1 332 aaPredicted RBP41.35■■■■■ 4.21
LTBP3-213ENST00000529371 CSRNP3Q8WYN3 585 aa41.34■■■■■ 4.21
LTBP3-213ENST00000529371 DNAJC5Q9H3Z4 198 aa41.32■■■■■ 4.21
LTBP3-213ENST00000529371 RAPGEF2Q9Y4G8 1499 aa41.3■■■■■ 4.2
LTBP3-213ENST00000529371 NUP160Q12769 1436 aa41.27■■■■■ 4.2
LTBP3-213ENST00000529371 CEP170Q5SW79 1584 aa41.25■■■■■ 4.19
LTBP3-213ENST00000529371 CLASP1Q7Z460 1538 aa41.23■■■■■ 4.19
LTBP3-213ENST00000529371 PRXQ9BXM0 1461 aa41.22■■■■■ 4.19
LTBP3-213ENST00000529371 KIAA0586Q9BVV6 1533 aa41.03■■■■■ 4.16
LTBP3-213ENST00000529371 KIF21BO75037 1637 aa41.02■■■■■ 4.16
Retrieved 100 of 20,778 RNA–protein pairs in 229.1 ms