RNA–Protein interactions for RNA: ENST00000529167.5

C11orf88-203, Transcript of chromosome 11 open reading frame 88, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene C11orf88, Length 3,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-203ENST00000529167 NISCHQ9Y2I1 1504 aa16.51■□□□□ 0.23
C11orf88-203ENST00000529167 ABCC9O60706 1549 aa15.43■□□□□ 0.06
C11orf88-203ENST00000529167 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
C11orf88-203ENST00000529167 DNAJC5BQ9UF47 199 aa14.94□□□□□ -0.02
C11orf88-203ENST00000529167 RB1CC1Q8TDY2 1594 aa14.58□□□□□ -0.07
C11orf88-203ENST00000529167 NACADO15069 1562 aa14.39□□□□□ -0.11
C11orf88-203ENST00000529167 CHIC1Q5VXU3 224 aa14.28□□□□□ -0.12
C11orf88-203ENST00000529167 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.13
C11orf88-203ENST00000529167 PABPN1Q86U42 306 aaKnown RBP eCLIP14.21□□□□□ -0.13
C11orf88-203ENST00000529167 BICRAQ9NZM4 1560 aa14.2□□□□□ -0.14
C11orf88-203ENST00000529167 DNAJC5Q9H3Z4 198 aa14.14□□□□□ -0.15
C11orf88-203ENST00000529167 MYO15BQ96JP2 1530 aa14.11□□□□□ -0.15
C11orf88-203ENST00000529167 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
C11orf88-203ENST00000529167 PELP1Q8IZL8 1130 aaKnown RBP14.04□□□□□ -0.16
C11orf88-203ENST00000529167 CECR2Q9BXF3 1484 aa14.01□□□□□ -0.17
C11orf88-203ENST00000529167 CC2D2AQ9P2K1 1620 aa14□□□□□ -0.17
C11orf88-203ENST00000529167 EIF4G1Q04637 1599 aaKnown RBP13.86□□□□□ -0.19
C11orf88-203ENST00000529167 DCAF8L2P0C7V8 631 aa13.85□□□□□ -0.19
C11orf88-203ENST00000529167 MYT1Q01538 1121 aa13.72□□□□□ -0.21
C11orf88-203ENST00000529167 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
C11orf88-203ENST00000529167 AEBP2Q6ZN18 517 aaPredicted RBP13.7□□□□□ -0.22
C11orf88-203ENST00000529167 CUX2O14529 1486 aa13.66□□□□□ -0.22
C11orf88-203ENST00000529167 ZCCHC6Q5VYS8 1495 aaKnown RBP13.6□□□□□ -0.23
C11orf88-203ENST00000529167 SCRIBQ14160 1630 aa13.59□□□□□ -0.23
C11orf88-203ENST00000529167 HRCP23327 699 aa13.58□□□□□ -0.23
C11orf88-203ENST00000529167 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
C11orf88-203ENST00000529167 PRKCSHP14314 528 aaPredicted RBP13.3□□□□□ -0.28
C11orf88-203ENST00000529167 NCAPD3P42695 1498 aa13.28□□□□□ -0.28
C11orf88-203ENST00000529167 THOC2Q8NI27 1593 aaKnown RBP13.21□□□□□ -0.29
C11orf88-203ENST00000529167 HMGXB3Q12766 1538 aa13.16□□□□□ -0.3
C11orf88-203ENST00000529167 TTBK1Q5TCY1 1321 aaPredicted RBP13.14□□□□□ -0.31
C11orf88-203ENST00000529167 TRIM41Q8WV44 630 aa13.14□□□□□ -0.31
C11orf88-203ENST00000529167 NESP48681 1621 aa13.13□□□□□ -0.31
C11orf88-203ENST00000529167 ATAD2BQ9ULI0 1458 aa13.13□□□□□ -0.31
C11orf88-203ENST00000529167 SCAF1Q9H7N4 1312 aaKnown RBP13.09□□□□□ -0.31
C11orf88-203ENST00000529167 SMARCA2P51531 1590 aa13.09□□□□□ -0.31
C11orf88-203ENST00000529167 PPARGC1BQ86YN6 1023 aaKnown RBP13.07□□□□□ -0.32
C11orf88-203ENST00000529167 LAMC3Q9Y6N6 1575 aa13.06□□□□□ -0.32
C11orf88-203ENST00000529167 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
C11orf88-203ENST00000529167 SMARCA4P51532 1647 aa13□□□□□ -0.33
C11orf88-203ENST00000529167 PEG3Q9GZU2 1588 aa12.96□□□□□ -0.33
C11orf88-203ENST00000529167 PDS5BQ9NTI5 1447 aa12.94□□□□□ -0.34
C11orf88-203ENST00000529167 EHMT2Q96KQ7 1210 aa12.93□□□□□ -0.34
C11orf88-203ENST00000529167 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
C11orf88-203ENST00000529167 BAZ1AQ9NRL2 1556 aaPredicted RBP12.93□□□□□ -0.34
C11orf88-203ENST00000529167 WDR62O43379 1518 aa12.92□□□□□ -0.34
C11orf88-203ENST00000529167 MRC2Q9UBG0 1479 aa12.89□□□□□ -0.35
C11orf88-203ENST00000529167 PHF23Q9BUL5 403 aaPredicted RBP12.89□□□□□ -0.35
C11orf88-203ENST00000529167 SLC24A1O60721 1099 aa12.87□□□□□ -0.35
C11orf88-203ENST00000529167 APLP2Q06481 763 aa12.86□□□□□ -0.35
C11orf88-203ENST00000529167 PCGF6Q9BYE7 350 aa12.86□□□□□ -0.35
C11orf88-203ENST00000529167 BCL11AQ9H165 835 aa12.83□□□□□ -0.36
C11orf88-203ENST00000529167 OSCARQ8IYS5 282 aa12.81□□□□□ -0.36
C11orf88-203ENST00000529167 CADPSQ9ULU8 1353 aa12.79□□□□□ -0.36
C11orf88-203ENST00000529167 RIMBP3CA6NJZ7 1639 aa12.78□□□□□ -0.36
C11orf88-203ENST00000529167 RIMBP3BA6NNM3 1639 aa12.78□□□□□ -0.36
C11orf88-203ENST00000529167 RIMBP3Q9UFD9 1639 aa12.78□□□□□ -0.36
C11orf88-203ENST00000529167 FAM9AQ8IZU1 332 aaPredicted RBP12.74□□□□□ -0.37
C11orf88-203ENST00000529167 CEP164Q9UPV0 1460 aa12.71□□□□□ -0.38
C11orf88-203ENST00000529167 ERICH6Q7L0X2 663 aa12.69□□□□□ -0.38
C11orf88-203ENST00000529167 MROH2BQ7Z745 1585 aa12.68□□□□□ -0.38
C11orf88-203ENST00000529167 ARHGEF11O15085 1522 aa12.67□□□□□ -0.38
C11orf88-203ENST00000529167 ACIN1Q9UKV3 1341 aaKnown RBP12.64□□□□□ -0.39
C11orf88-203ENST00000529167 FANCD2Q9BXW9 1451 aa12.64□□□□□ -0.39
C11orf88-203ENST00000529167 ZEB1P37275 1124 aaPredicted RBP12.62□□□□□ -0.39
C11orf88-203ENST00000529167 URB2Q14146 1524 aaKnown RBP12.59□□□□□ -0.39
C11orf88-203ENST00000529167 CFTRP13569 1480 aa12.58□□□□□ -0.4
C11orf88-203ENST00000529167 ARAP1Q96P48 1450 aa12.52□□□□□ -0.41
C11orf88-203ENST00000529167 NEUROD1Q13562 356 aa12.51□□□□□ -0.41
C11orf88-203ENST00000529167 IFT140Q96RY7 1462 aa12.51□□□□□ -0.41
C11orf88-203ENST00000529167 WIZO95785 1651 aa12.49□□□□□ -0.41
C11orf88-203ENST00000529167 GTF3C3Q9Y5Q9 886 aa12.48□□□□□ -0.41
C11orf88-203ENST00000529167 RSF1Q96T23 1441 aaPredicted RBP12.48□□□□□ -0.41
C11orf88-203ENST00000529167 CENPBP07199 599 aaPredicted RBP12.48□□□□□ -0.41
C11orf88-203ENST00000529167 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
C11orf88-203ENST00000529167 PRDM2Q13029 1718 aa12.47□□□□□ -0.41
C11orf88-203ENST00000529167 CYB5RLQ6IPT4 315 aa12.47□□□□□ -0.41
C11orf88-203ENST00000529167 TRIM26Q12899 539 aaPredicted RBP12.46□□□□□ -0.41
C11orf88-203ENST00000529167 TRHP20396 242 aaPredicted RBP12.46□□□□□ -0.42
C11orf88-203ENST00000529167 CHD1O14646 1710 aa12.43□□□□□ -0.42
C11orf88-203ENST00000529167 EIF4G3O43432 1585 aaKnown RBP12.43□□□□□ -0.42
C11orf88-203ENST00000529167 TOP2AP11388 1531 aaKnown RBP12.36□□□□□ -0.43
C11orf88-203ENST00000529167 TOPBP1Q92547 1522 aa12.36□□□□□ -0.43
C11orf88-203ENST00000529167 ABCC8Q09428 1581 aa12.35□□□□□ -0.43
C11orf88-203ENST00000529167 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.43
C11orf88-203ENST00000529167 TARBP1Q13395 1621 aaKnown RBP12.33□□□□□ -0.44
C11orf88-203ENST00000529167 PLPPR3Q6T4P5 718 aa12.3□□□□□ -0.44
C11orf88-203ENST00000529167 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
C11orf88-203ENST00000529167 AQRO60306 1485 aaKnown RBP eCLIP12.26□□□□□ -0.45
C11orf88-203ENST00000529167 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
C11orf88-203ENST00000529167 ANP32EQ9BTT0 268 aa12.24□□□□□ -0.45
C11orf88-203ENST00000529167 DAXXQ9UER7 740 aaPredicted RBP12.23□□□□□ -0.45
C11orf88-203ENST00000529167 SYNJ1O43426 1573 aa12.23□□□□□ -0.45
C11orf88-203ENST00000529167 POLA1P09884 1462 aaPredicted RBP12.19□□□□□ -0.46
C11orf88-203ENST00000529167 MAGI1Q96QZ7 1491 aaPredicted RBP12.17□□□□□ -0.46
C11orf88-203ENST00000529167 SUPT5HO00267 1087 aaKnown RBP12.17□□□□□ -0.46
C11orf88-203ENST00000529167 CCDC88BA6NC98 1476 aa12.16□□□□□ -0.46
C11orf88-203ENST00000529167 SNAPC4Q5SXM2 1469 aa12.16□□□□□ -0.46
C11orf88-203ENST00000529167 GAPVD1Q14C86 1478 aa12.15□□□□□ -0.46
C11orf88-203ENST00000529167 FBLN2P98095 1184 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms