RNA–Protein interactions for RNA: ENST00000528599.1

TRAF3IP2-211, Transcript of TRAF3 interacting protein 2, humanhuman

TSL 1 (best)

Gene TRAF3IP2, Length 1,663 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2-211ENST00000528599 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.18
TRAF3IP2-211ENST00000528599 CCDC180Q9P1Z9 1646 aa25.39■■□□□ 1.65
TRAF3IP2-211ENST00000528599 ABCC9O60706 1549 aa24.8■■□□□ 1.56
TRAF3IP2-211ENST00000528599 ZCCHC6Q5VYS8 1495 aaKnown RBP24■■□□□ 1.43
TRAF3IP2-211ENST00000528599 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
TRAF3IP2-211ENST00000528599 NACADO15069 1562 aa23.83■■□□□ 1.41
TRAF3IP2-211ENST00000528599 RB1CC1Q8TDY2 1594 aa23.83■■□□□ 1.41
TRAF3IP2-211ENST00000528599 DCAF1Q9Y4B6 1507 aa23.73■■□□□ 1.39
TRAF3IP2-211ENST00000528599 MYO15BQ96JP2 1530 aa23.71■■□□□ 1.39
TRAF3IP2-211ENST00000528599 UNC13AQ9UPW8 1703 aa23.42■■□□□ 1.34
TRAF3IP2-211ENST00000528599 SCRIBQ14160 1630 aa23.23■■□□□ 1.31
TRAF3IP2-211ENST00000528599 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
TRAF3IP2-211ENST00000528599 PABPN1Q86U42 306 aaKnown RBP eCLIP23.19■■□□□ 1.3
TRAF3IP2-211ENST00000528599 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
TRAF3IP2-211ENST00000528599 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
TRAF3IP2-211ENST00000528599 EIF4G1Q04637 1599 aaKnown RBP22.55■■□□□ 1.2
TRAF3IP2-211ENST00000528599 CC2D2AQ9P2K1 1620 aa22.44■■□□□ 1.18
TRAF3IP2-211ENST00000528599 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
TRAF3IP2-211ENST00000528599 SMARCA4P51532 1647 aa22.21■■□□□ 1.15
TRAF3IP2-211ENST00000528599 BAZ1AQ9NRL2 1556 aaPredicted RBP22.18■■□□□ 1.14
TRAF3IP2-211ENST00000528599 MROH2BQ7Z745 1585 aa22.15■■□□□ 1.14
TRAF3IP2-211ENST00000528599 ATAD2BQ9ULI0 1458 aa22.06■■□□□ 1.12
TRAF3IP2-211ENST00000528599 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
TRAF3IP2-211ENST00000528599 NCAPD3P42695 1498 aa22.01■■□□□ 1.11
TRAF3IP2-211ENST00000528599 SMARCA2P51531 1590 aa21.99■■□□□ 1.11
TRAF3IP2-211ENST00000528599 PEG3Q9GZU2 1588 aa21.99■■□□□ 1.11
TRAF3IP2-211ENST00000528599 WIZO95785 1651 aa21.93■■□□□ 1.1
TRAF3IP2-211ENST00000528599 HMGXB3Q12766 1538 aa21.91■■□□□ 1.1
TRAF3IP2-211ENST00000528599 SUPT5HO00267 1087 aaKnown RBP21.87■■□□□ 1.09
TRAF3IP2-211ENST00000528599 BAZ1BQ9UIG0 1483 aaKnown RBP21.85■■□□□ 1.09
TRAF3IP2-211ENST00000528599 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
TRAF3IP2-211ENST00000528599 NESP48681 1621 aa21.54■■□□□ 1.04
TRAF3IP2-211ENST00000528599 CCDC88BA6NC98 1476 aa21.47■■□□□ 1.03
TRAF3IP2-211ENST00000528599 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
TRAF3IP2-211ENST00000528599 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
TRAF3IP2-211ENST00000528599 ERCC6Q03468 1493 aa21.31■■□□□ 1
TRAF3IP2-211ENST00000528599 CFTRP13569 1480 aa21.28■■□□□ 1
TRAF3IP2-211ENST00000528599 KIF21AQ7Z4S6 1674 aa21.27■■□□□ 1
TRAF3IP2-211ENST00000528599 PDS5BQ9NTI5 1447 aa21.22■□□□□ 0.99
TRAF3IP2-211ENST00000528599 THOC2Q8NI27 1593 aaKnown RBP21.17■□□□□ 0.98
TRAF3IP2-211ENST00000528599 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
TRAF3IP2-211ENST00000528599 PRDM2Q13029 1718 aa21.13■□□□□ 0.97
TRAF3IP2-211ENST00000528599 CEP164Q9UPV0 1460 aa21.08■□□□□ 0.97
TRAF3IP2-211ENST00000528599 CUX2O14529 1486 aa21.04■□□□□ 0.96
TRAF3IP2-211ENST00000528599 MRC2Q9UBG0 1479 aa21.04■□□□□ 0.96
TRAF3IP2-211ENST00000528599 WDR62O43379 1518 aa21■□□□□ 0.95
TRAF3IP2-211ENST00000528599 URB2Q14146 1524 aaKnown RBP20.96■□□□□ 0.95
TRAF3IP2-211ENST00000528599 ABCC8Q09428 1581 aa20.83■□□□□ 0.93
TRAF3IP2-211ENST00000528599 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
TRAF3IP2-211ENST00000528599 DNMBPQ6XZF7 1577 aa20.78■□□□□ 0.92
TRAF3IP2-211ENST00000528599 WRNQ14191 1432 aaPredicted RBP eCLIP20.77■□□□□ 0.91
TRAF3IP2-211ENST00000528599 CUX1P39880 1505 aa20.74■□□□□ 0.91
TRAF3IP2-211ENST00000528599 DNAJC5Q9H3Z4 198 aa20.73■□□□□ 0.91
TRAF3IP2-211ENST00000528599 SYNJ1O43426 1573 aa20.7■□□□□ 0.91
TRAF3IP2-211ENST00000528599 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
TRAF3IP2-211ENST00000528599 POLA1P09884 1462 aaPredicted RBP20.67■□□□□ 0.9
TRAF3IP2-211ENST00000528599 TOP2BQ02880 1626 aa20.66■□□□□ 0.9
TRAF3IP2-211ENST00000528599 BIVM-ERCC5R4GMW8 1640 aa20.65■□□□□ 0.9
TRAF3IP2-211ENST00000528599 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
TRAF3IP2-211ENST00000528599 IFT140Q96RY7 1462 aa20.62■□□□□ 0.89
TRAF3IP2-211ENST00000528599 TARBP1Q13395 1621 aaKnown RBP20.62■□□□□ 0.89
TRAF3IP2-211ENST00000528599 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
TRAF3IP2-211ENST00000528599 TRIM41Q8WV44 630 aa20.61■□□□□ 0.89
TRAF3IP2-211ENST00000528599 RAD54L2Q9Y4B4 1467 aa20.59■□□□□ 0.89
TRAF3IP2-211ENST00000528599 SOGA1O94964 1423 aa20.53■□□□□ 0.88
TRAF3IP2-211ENST00000528599 EIF4G3O43432 1585 aaKnown RBP20.51■□□□□ 0.87
TRAF3IP2-211ENST00000528599 WDR97A6NE52 1622 aa20.49■□□□□ 0.87
TRAF3IP2-211ENST00000528599 AQRO60306 1485 aaKnown RBP eCLIP20.48■□□□□ 0.87
TRAF3IP2-211ENST00000528599 TDRD9Q8NDG6 1382 aaKnown RBP20.45■□□□□ 0.86
TRAF3IP2-211ENST00000528599 ABCA10Q8WWZ4 1543 aa20.4■□□□□ 0.86
TRAF3IP2-211ENST00000528599 ABCA5Q8WWZ7 1642 aa20.35■□□□□ 0.85
TRAF3IP2-211ENST00000528599 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
TRAF3IP2-211ENST00000528599 GAPVD1Q14C86 1478 aa20.31■□□□□ 0.84
TRAF3IP2-211ENST00000528599 PBRM1Q86U86 1689 aa20.3■□□□□ 0.84
TRAF3IP2-211ENST00000528599 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
TRAF3IP2-211ENST00000528599 SNAPC4Q5SXM2 1469 aa20.28■□□□□ 0.84
TRAF3IP2-211ENST00000528599 GRIN2BQ13224 1484 aa20.27■□□□□ 0.84
TRAF3IP2-211ENST00000528599 CHD1O14646 1710 aa20.24■□□□□ 0.83
TRAF3IP2-211ENST00000528599 MAGI1Q96QZ7 1491 aaPredicted RBP20.21■□□□□ 0.83
TRAF3IP2-211ENST00000528599 FAM9AQ8IZU1 332 aaPredicted RBP20.21■□□□□ 0.83
TRAF3IP2-211ENST00000528599 EEA1Q15075 1411 aa20.18■□□□□ 0.82
TRAF3IP2-211ENST00000528599 IGF1RP08069 1367 aa20.18■□□□□ 0.82
TRAF3IP2-211ENST00000528599 OSCARQ8IYS5 282 aa20.16■□□□□ 0.82
TRAF3IP2-211ENST00000528599 FBLN2P98095 1184 aa20.15■□□□□ 0.82
TRAF3IP2-211ENST00000528599 ERICH3Q5RHP9 1530 aa20.15■□□□□ 0.82
TRAF3IP2-211ENST00000528599 SYNJ2O15056 1496 aa20.15■□□□□ 0.82
TRAF3IP2-211ENST00000528599 ADAMTS12P58397 1594 aa20.14■□□□□ 0.82
TRAF3IP2-211ENST00000528599 CSRNP3Q8WYN3 585 aa20.13■□□□□ 0.81
TRAF3IP2-211ENST00000528599 CHMP7Q8WUX9 453 aaPredicted RBP20.09■□□□□ 0.81
TRAF3IP2-211ENST00000528599 FHAD1B1AJZ9 1412 aa20.06■□□□□ 0.8
TRAF3IP2-211ENST00000528599 CARMIL1Q5VZK9 1371 aa20.05■□□□□ 0.8
TRAF3IP2-211ENST00000528599 GRIN2AQ12879 1464 aa20.05■□□□□ 0.8
TRAF3IP2-211ENST00000528599 CUL7Q14999 1698 aa20.04■□□□□ 0.8
TRAF3IP2-211ENST00000528599 PRXQ9BXM0 1461 aa20.04■□□□□ 0.8
TRAF3IP2-211ENST00000528599 CLASP1Q7Z460 1538 aa20.02■□□□□ 0.79
TRAF3IP2-211ENST00000528599 CEP170Q5SW79 1584 aa19.99■□□□□ 0.79
TRAF3IP2-211ENST00000528599 RAPGEF2Q9Y4G8 1499 aa19.97■□□□□ 0.79
TRAF3IP2-211ENST00000528599 NUP160Q12769 1436 aa19.96■□□□□ 0.79
TRAF3IP2-211ENST00000528599 KIF21BO75037 1637 aa19.95■□□□□ 0.78
TRAF3IP2-211ENST00000528599 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms