RNA–Protein interactions for RNA: ENST00000520700.1

TRAM1-203, Transcript of translocation associated membrane protein 1, humanhuman

TSL 5

Gene TRAM1, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-203ENST00000520700 NISCHQ9Y2I1 1504 aa41.54■■■■■ 4.24
TRAM1-203ENST00000520700 CCDC180Q9P1Z9 1646 aa36.69■■■■□ 3.46
TRAM1-203ENST00000520700 ABCC9O60706 1549 aa35.42■■■■□ 3.26
TRAM1-203ENST00000520700 ZCCHC6Q5VYS8 1495 aaKnown RBP34.68■■■■□ 3.14
TRAM1-203ENST00000520700 MYO15BQ96JP2 1530 aa34.49■■■■□ 3.11
TRAM1-203ENST00000520700 DCAF1Q9Y4B6 1507 aa34.47■■■■□ 3.11
TRAM1-203ENST00000520700 NACADO15069 1562 aa34.45■■■■□ 3.1
TRAM1-203ENST00000520700 DCAF8L2P0C7V8 631 aa34.43■■■■□ 3.1
TRAM1-203ENST00000520700 RB1CC1Q8TDY2 1594 aa34.33■■■■□ 3.09
TRAM1-203ENST00000520700 UNC13AQ9UPW8 1703 aa33.45■■■□□ 2.94
TRAM1-203ENST00000520700 SCRIBQ14160 1630 aa33.41■■■□□ 2.94
TRAM1-203ENST00000520700 BICRAQ9NZM4 1560 aa33.28■■■□□ 2.92
TRAM1-203ENST00000520700 PABPN1Q86U42 306 aaKnown RBP eCLIP33.21■■■□□ 2.91
TRAM1-203ENST00000520700 SHROOM4Q9ULL8 1493 aa33.08■■■□□ 2.89
TRAM1-203ENST00000520700 EIF4G1Q04637 1599 aaKnown RBP32.35■■■□□ 2.77
TRAM1-203ENST00000520700 CECR2Q9BXF3 1484 aa32.27■■■□□ 2.76
TRAM1-203ENST00000520700 DNAJC5BQ9UF47 199 aa32.2■■■□□ 2.75
TRAM1-203ENST00000520700 BAZ1AQ9NRL2 1556 aaPredicted RBP32.15■■■□□ 2.74
TRAM1-203ENST00000520700 SMARCA4P51532 1647 aa32.08■■■□□ 2.73
TRAM1-203ENST00000520700 CC2D2AQ9P2K1 1620 aa32.08■■■□□ 2.73
TRAM1-203ENST00000520700 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
TRAM1-203ENST00000520700 ATAD2BQ9ULI0 1458 aa31.85■■■□□ 2.69
TRAM1-203ENST00000520700 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
TRAM1-203ENST00000520700 NCAPD3P42695 1498 aa31.84■■■□□ 2.69
TRAM1-203ENST00000520700 SMARCA2P51531 1590 aa31.83■■■□□ 2.69
TRAM1-203ENST00000520700 RSF1Q96T23 1441 aaPredicted RBP31.83■■■□□ 2.69
TRAM1-203ENST00000520700 HMGXB3Q12766 1538 aa31.65■■■□□ 2.66
TRAM1-203ENST00000520700 WIZO95785 1651 aa31.59■■■□□ 2.65
TRAM1-203ENST00000520700 BAZ1BQ9UIG0 1483 aaKnown RBP31.57■■■□□ 2.64
TRAM1-203ENST00000520700 TOP2AP11388 1531 aaKnown RBP31.35■■■□□ 2.61
TRAM1-203ENST00000520700 SUPT5HO00267 1087 aaKnown RBP31.25■■■□□ 2.59
TRAM1-203ENST00000520700 CCDC88BA6NC98 1476 aa31■■■□□ 2.55
TRAM1-203ENST00000520700 CADPSQ9ULU8 1353 aa30.91■■■□□ 2.54
TRAM1-203ENST00000520700 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
TRAM1-203ENST00000520700 CFTRP13569 1480 aa30.81■■■□□ 2.52
TRAM1-203ENST00000520700 NESP48681 1621 aa30.79■■■□□ 2.52
TRAM1-203ENST00000520700 PDS5BQ9NTI5 1447 aa30.66■■■□□ 2.5
TRAM1-203ENST00000520700 ERCC6Q03468 1493 aa30.5■■■□□ 2.47
TRAM1-203ENST00000520700 FANCD2Q9BXW9 1451 aa30.48■■■□□ 2.47
TRAM1-203ENST00000520700 PRDM2Q13029 1718 aa30.45■■■□□ 2.47
TRAM1-203ENST00000520700 CEP164Q9UPV0 1460 aa30.38■■■□□ 2.45
TRAM1-203ENST00000520700 KIF21AQ7Z4S6 1674 aa30.37■■■□□ 2.45
TRAM1-203ENST00000520700 MRC2Q9UBG0 1479 aa30.27■■■□□ 2.44
TRAM1-203ENST00000520700 THOC2Q8NI27 1593 aaKnown RBP30.23■■■□□ 2.43
TRAM1-203ENST00000520700 WDR62O43379 1518 aa30.16■■■□□ 2.42
TRAM1-203ENST00000520700 ABCC8Q09428 1581 aa30.15■■■□□ 2.42
TRAM1-203ENST00000520700 URB2Q14146 1524 aaKnown RBP30.14■■■□□ 2.42
TRAM1-203ENST00000520700 CUX2O14529 1486 aa30.12■■■□□ 2.41
TRAM1-203ENST00000520700 TOPBP1Q92547 1522 aa30.05■■■□□ 2.4
TRAM1-203ENST00000520700 DNMBPQ6XZF7 1577 aa30.03■■■□□ 2.4
TRAM1-203ENST00000520700 WRNQ14191 1432 aaPredicted RBP eCLIP29.97■■■□□ 2.39
TRAM1-203ENST00000520700 CUX1P39880 1505 aa29.96■■■□□ 2.39
TRAM1-203ENST00000520700 TOP2BQ02880 1626 aa29.84■■■□□ 2.37
TRAM1-203ENST00000520700 POLA1P09884 1462 aaPredicted RBP29.81■■■□□ 2.36
TRAM1-203ENST00000520700 BIVM-ERCC5R4GMW8 1640 aa29.81■■■□□ 2.36
TRAM1-203ENST00000520700 SYNJ1O43426 1573 aa29.8■■■□□ 2.36
TRAM1-203ENST00000520700 FGD5Q6ZNL6 1462 aa29.79■■■□□ 2.36
TRAM1-203ENST00000520700 IFT140Q96RY7 1462 aa29.79■■■□□ 2.36
TRAM1-203ENST00000520700 SOGA1O94964 1423 aa29.73■■■□□ 2.35
TRAM1-203ENST00000520700 TARBP1Q13395 1621 aaKnown RBP29.67■■■□□ 2.34
TRAM1-203ENST00000520700 RAD54L2Q9Y4B4 1467 aa29.66■■■□□ 2.34
TRAM1-203ENST00000520700 ABCA10Q8WWZ4 1543 aa29.58■■■□□ 2.33
TRAM1-203ENST00000520700 TRIM41Q8WV44 630 aa29.57■■■□□ 2.32
TRAM1-203ENST00000520700 ZNF608Q9ULD9 1512 aaPredicted RBP29.55■■■□□ 2.32
TRAM1-203ENST00000520700 WDR97A6NE52 1622 aa29.53■■■□□ 2.32
TRAM1-203ENST00000520700 CHIC1Q5VXU3 224 aa29.52■■■□□ 2.32
TRAM1-203ENST00000520700 TDRD9Q8NDG6 1382 aaKnown RBP29.49■■■□□ 2.31
TRAM1-203ENST00000520700 AQRO60306 1485 aaKnown RBP eCLIP29.46■■■□□ 2.315e-8■■■■■ 33.4
TRAM1-203ENST00000520700 EIF4G3O43432 1585 aaKnown RBP29.4■■■□□ 2.3
TRAM1-203ENST00000520700 GAPVD1Q14C86 1478 aa29.38■■■□□ 2.29
TRAM1-203ENST00000520700 ABCA5Q8WWZ7 1642 aa29.36■■■□□ 2.29
TRAM1-203ENST00000520700 KIF27Q86VH2 1401 aa29.33■■■□□ 2.29
TRAM1-203ENST00000520700 GRIN2BQ13224 1484 aa29.33■■■□□ 2.29
TRAM1-203ENST00000520700 ERICH3Q5RHP9 1530 aa29.23■■■□□ 2.27
TRAM1-203ENST00000520700 MAGI1Q96QZ7 1491 aaPredicted RBP29.22■■■□□ 2.27
TRAM1-203ENST00000520700 IGF1RP08069 1367 aa29.2■■■□□ 2.26
TRAM1-203ENST00000520700 PBRM1Q86U86 1689 aa29.18■■■□□ 2.26
TRAM1-203ENST00000520700 SNAPC4Q5SXM2 1469 aa29.17■■■□□ 2.26
TRAM1-203ENST00000520700 RUSC2Q8N2Y8 1516 aa29.13■■■□□ 2.25
TRAM1-203ENST00000520700 EEA1Q15075 1411 aa29.11■■■□□ 2.25
TRAM1-203ENST00000520700 FHAD1B1AJZ9 1412 aa29.1■■■□□ 2.25
TRAM1-203ENST00000520700 SYNJ2O15056 1496 aa29.09■■■□□ 2.25
TRAM1-203ENST00000520700 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
TRAM1-203ENST00000520700 ADAMTS12P58397 1594 aa29.03■■■□□ 2.24
TRAM1-203ENST00000520700 CARMIL1Q5VZK9 1371 aa29.01■■■□□ 2.23
TRAM1-203ENST00000520700 CSRNP3Q8WYN3 585 aa29■■■□□ 2.23
TRAM1-203ENST00000520700 CUL7Q14999 1698 aa28.99■■■□□ 2.23
TRAM1-203ENST00000520700 FBLN2P98095 1184 aa28.98■■■□□ 2.23
TRAM1-203ENST00000520700 OSCARQ8IYS5 282 aa28.98■■■□□ 2.23
TRAM1-203ENST00000520700 GRIN2AQ12879 1464 aa28.93■■■□□ 2.22
TRAM1-203ENST00000520700 CHD1O14646 1710 aa28.91■■■□□ 2.22
TRAM1-203ENST00000520700 PRXQ9BXM0 1461 aa28.9■■■□□ 2.22
TRAM1-203ENST00000520700 RAPGEF2Q9Y4G8 1499 aa28.86■■■□□ 2.21
TRAM1-203ENST00000520700 FAM9AQ8IZU1 332 aaPredicted RBP28.84■■■□□ 2.21
TRAM1-203ENST00000520700 NUP160Q12769 1436 aa28.84■■■□□ 2.21
TRAM1-203ENST00000520700 CEP170Q5SW79 1584 aa28.72■■■□□ 2.19
TRAM1-203ENST00000520700 DNAJC5Q9H3Z4 198 aa28.72■■■□□ 2.19
TRAM1-203ENST00000520700 CLASP1Q7Z460 1538 aa28.72■■■□□ 2.19
TRAM1-203ENST00000520700 KIF21BO75037 1637 aa28.68■■■□□ 2.18
TRAM1-203ENST00000520700 KIAA0586Q9BVV6 1533 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms