RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 NISCHQ9Y2I1 1504 aa19.97■□□□□ 0.79
VAPB-206ENST00000520497 AEBP2Q6ZN18 517 aaPredicted RBP18.58■□□□□ 0.56
VAPB-206ENST00000520497 CHIC1Q5VXU3 224 aa17.66■□□□□ 0.42
VAPB-206ENST00000520497 CCDC180Q9P1Z9 1646 aa17.65■□□□□ 0.42
VAPB-206ENST00000520497 ABCC9O60706 1549 aa17.19■□□□□ 0.34
VAPB-206ENST00000520497 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
VAPB-206ENST00000520497 DCAF1Q9Y4B6 1507 aa16.57■□□□□ 0.24
VAPB-206ENST00000520497 MYO15BQ96JP2 1530 aa16.46■□□□□ 0.23
VAPB-206ENST00000520497 NACADO15069 1562 aa16.38■□□□□ 0.21
VAPB-206ENST00000520497 DCAF8L2P0C7V8 631 aa16.3■□□□□ 0.2
VAPB-206ENST00000520497 RB1CC1Q8TDY2 1594 aa16.29■□□□□ 0.2
VAPB-206ENST00000520497 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
VAPB-206ENST00000520497 UNC13AQ9UPW8 1703 aa16.1■□□□□ 0.17
VAPB-206ENST00000520497 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
VAPB-206ENST00000520497 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
VAPB-206ENST00000520497 SHROOM4Q9ULL8 1493 aa15.97■□□□□ 0.15
VAPB-206ENST00000520497 BICRAQ9NZM4 1560 aa15.87■□□□□ 0.13
VAPB-206ENST00000520497 SENP3Q9H4L4 574 aaPredicted RBP15.81■□□□□ 0.12
VAPB-206ENST00000520497 PHF23Q9BUL5 403 aaPredicted RBP15.61■□□□□ 0.09
VAPB-206ENST00000520497 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
VAPB-206ENST00000520497 CC2D2AQ9P2K1 1620 aa15.48■□□□□ 0.07
VAPB-206ENST00000520497 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
VAPB-206ENST00000520497 SMARCA4P51532 1647 aa15.44■□□□□ 0.06
VAPB-206ENST00000520497 EIF4G1Q04637 1599 aaKnown RBP15.43■□□□□ 0.06
VAPB-206ENST00000520497 MROH2BQ7Z745 1585 aa15.4■□□□□ 0.06
VAPB-206ENST00000520497 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
VAPB-206ENST00000520497 WIZO95785 1651 aa15.31■□□□□ 0.04
VAPB-206ENST00000520497 PEG3Q9GZU2 1588 aa15.29■□□□□ 0.04
VAPB-206ENST00000520497 SUPT5HO00267 1087 aaKnown RBP15.24■□□□□ 0.03
VAPB-206ENST00000520497 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
VAPB-206ENST00000520497 ATAD2BQ9ULI0 1458 aa15.16■□□□□ 0.02
VAPB-206ENST00000520497 TOP2AP11388 1531 aaKnown RBP15.14■□□□□ 0.01
VAPB-206ENST00000520497 HMGXB3Q12766 1538 aa15.11■□□□□ 0.01
VAPB-206ENST00000520497 NCAPD3P42695 1498 aa15.08■□□□□ 0
VAPB-206ENST00000520497 BAZ1BQ9UIG0 1483 aaKnown RBP15.06■□□□□ 0
VAPB-206ENST00000520497 POTEDQ86YR6 584 aa14.97□□□□□ -0.01
VAPB-206ENST00000520497 CCDC88BA6NC98 1476 aa14.92□□□□□ -0.02
VAPB-206ENST00000520497 FOXD1Q16676 465 aa14.91□□□□□ -0.02
VAPB-206ENST00000520497 PRDM2Q13029 1718 aa14.82□□□□□ -0.04
VAPB-206ENST00000520497 NESP48681 1621 aa14.8□□□□□ -0.04
VAPB-206ENST00000520497 DNAJC5Q9H3Z4 198 aa14.75□□□□□ -0.05
VAPB-206ENST00000520497 ERCC6Q03468 1493 aa14.75□□□□□ -0.05
VAPB-206ENST00000520497 CFTRP13569 1480 aa14.69□□□□□ -0.06
VAPB-206ENST00000520497 CUX2O14529 1486 aa14.68□□□□□ -0.06
VAPB-206ENST00000520497 LAMC3Q9Y6N6 1575 aa14.65□□□□□ -0.06
VAPB-206ENST00000520497 CADPSQ9ULU8 1353 aa14.63□□□□□ -0.07
VAPB-206ENST00000520497 THOC2Q8NI27 1593 aaKnown RBP14.57□□□□□ -0.08
VAPB-206ENST00000520497 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
VAPB-206ENST00000520497 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
VAPB-206ENST00000520497 BIVM-ERCC5R4GMW8 1640 aa14.49□□□□□ -0.09
VAPB-206ENST00000520497 FANCD2Q9BXW9 1451 aa14.49□□□□□ -0.09
VAPB-206ENST00000520497 SYNJ1O43426 1573 aa14.48□□□□□ -0.09
VAPB-206ENST00000520497 TOP2BQ02880 1626 aa14.46□□□□□ -0.09
VAPB-206ENST00000520497 WRNQ14191 1432 aaPredicted RBP eCLIP14.46□□□□□ -0.09
VAPB-206ENST00000520497 PDS5BQ9NTI5 1447 aa14.45□□□□□ -0.1
VAPB-206ENST00000520497 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
VAPB-206ENST00000520497 CUX1P39880 1505 aa14.42□□□□□ -0.1
VAPB-206ENST00000520497 DNMBPQ6XZF7 1577 aa14.39□□□□□ -0.11
VAPB-206ENST00000520497 MRC2Q9UBG0 1479 aa14.38□□□□□ -0.11
VAPB-206ENST00000520497 TRIM41Q8WV44 630 aa14.37□□□□□ -0.11
VAPB-206ENST00000520497 URB2Q14146 1524 aaKnown RBP14.35□□□□□ -0.11
VAPB-206ENST00000520497 WDR62O43379 1518 aa14.34□□□□□ -0.11
VAPB-206ENST00000520497 TOPBP1Q92547 1522 aa14.34□□□□□ -0.11
VAPB-206ENST00000520497 FGD5Q6ZNL6 1462 aa14.28□□□□□ -0.12
VAPB-206ENST00000520497 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
VAPB-206ENST00000520497 POLA1P09884 1462 aaPredicted RBP14.25□□□□□ -0.13
VAPB-206ENST00000520497 TARBP1Q13395 1621 aaKnown RBP14.2□□□□□ -0.14
VAPB-206ENST00000520497 SOGA1O94964 1423 aa14.18□□□□□ -0.14
VAPB-206ENST00000520497 EEA1Q15075 1411 aa14.17□□□□□ -0.14
VAPB-206ENST00000520497 ABCA10Q8WWZ4 1543 aa14.17□□□□□ -0.14
VAPB-206ENST00000520497 RUSC2Q8N2Y8 1516 aa14.16□□□□□ -0.14
VAPB-206ENST00000520497 RAD54L2Q9Y4B4 1467 aa14.15□□□□□ -0.14
VAPB-206ENST00000520497 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
VAPB-206ENST00000520497 ABCA5Q8WWZ7 1642 aa14.14□□□□□ -0.15
VAPB-206ENST00000520497 KIF27Q86VH2 1401 aa14.1□□□□□ -0.15
VAPB-206ENST00000520497 IFT140Q96RY7 1462 aa14.1□□□□□ -0.15
VAPB-206ENST00000520497 PBRM1Q86U86 1689 aa14.1□□□□□ -0.15
VAPB-206ENST00000520497 ZNF608Q9ULD9 1512 aaPredicted RBP14.1□□□□□ -0.15
VAPB-206ENST00000520497 MSH5O43196 834 aa14.07□□□□□ -0.16
VAPB-206ENST00000520497 KIF21BO75037 1637 aa14.07□□□□□ -0.16
VAPB-206ENST00000520497 FAM9AQ8IZU1 332 aaPredicted RBP14.05□□□□□ -0.16
VAPB-206ENST00000520497 EIF4G3O43432 1585 aaKnown RBP14.05□□□□□ -0.16
VAPB-206ENST00000520497 OSCARQ8IYS5 282 aa14.04□□□□□ -0.16
VAPB-206ENST00000520497 CUL7Q14999 1698 aa14.04□□□□□ -0.16
VAPB-206ENST00000520497 ERICH3Q5RHP9 1530 aa14.02□□□□□ -0.16
VAPB-206ENST00000520497 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.17
VAPB-206ENST00000520497 GAPVD1Q14C86 1478 aa14.01□□□□□ -0.17
VAPB-206ENST00000520497 PRXQ9BXM0 1461 aa13.99□□□□□ -0.17
VAPB-206ENST00000520497 TDRD9Q8NDG6 1382 aaKnown RBP13.98□□□□□ -0.17
VAPB-206ENST00000520497 IGF1RP08069 1367 aa13.97□□□□□ -0.17
VAPB-206ENST00000520497 AQRO60306 1485 aaKnown RBP eCLIP13.96□□□□□ -0.171e-6■■■■□ 26.3
VAPB-206ENST00000520497 GOLGA3Q08378 1498 aa13.95□□□□□ -0.18
VAPB-206ENST00000520497 GRIN2BQ13224 1484 aa13.94□□□□□ -0.18
VAPB-206ENST00000520497 RAPGEF2Q9Y4G8 1499 aa13.94□□□□□ -0.18
VAPB-206ENST00000520497 ADAMTS12P58397 1594 aa13.94□□□□□ -0.18
VAPB-206ENST00000520497 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
VAPB-206ENST00000520497 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
VAPB-206ENST00000520497 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
VAPB-206ENST00000520497 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
VAPB-206ENST00000520497 CARMIL1Q5VZK9 1371 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms