RNA–Protein interactions for RNA: ENST00000520260.5

CTNNA1-220, Transcript of catenin alpha 1, humanhuman

TSL 4

Gene CTNNA1, Length 710 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-220ENST00000520260 AEBP2Q6ZN18 517 aaPredicted RBP16.13■□□□□ 0.17
CTNNA1-220ENST00000520260 CHIC1Q5VXU3 224 aa14.96□□□□□ -0.01
CTNNA1-220ENST00000520260 SENP3Q9H4L4 574 aaPredicted RBP13.8□□□□□ -0.2
CTNNA1-220ENST00000520260 POTEDQ86YR6 584 aa13.59□□□□□ -0.23
CTNNA1-220ENST00000520260 PHF23Q9BUL5 403 aaPredicted RBP13.54□□□□□ -0.24
CTNNA1-220ENST00000520260 NISCHQ9Y2I1 1504 aa13.18□□□□□ -0.3
CTNNA1-220ENST00000520260 FOXD1Q16676 465 aa13.02□□□□□ -0.33
CTNNA1-220ENST00000520260 MSH5O43196 834 aa12.43□□□□□ -0.42
CTNNA1-220ENST00000520260 PIAS4Q8N2W9 510 aaPredicted RBP11.94□□□□□ -0.5
CTNNA1-220ENST00000520260 CCDC180Q9P1Z9 1646 aa11.78□□□□□ -0.52
CTNNA1-220ENST00000520260 PPP6R1Q9UPN7 881 aa11.57□□□□□ -0.56
CTNNA1-220ENST00000520260 ADRA2BP18089 450 aa11.47□□□□□ -0.57
CTNNA1-220ENST00000520260 ABCC9O60706 1549 aa11.33□□□□□ -0.6
CTNNA1-220ENST00000520260 CACNB1Q02641 598 aaPredicted RBP11.19□□□□□ -0.62
CTNNA1-220ENST00000520260 PLPPR3Q6T4P5 718 aa11.16□□□□□ -0.62
CTNNA1-220ENST00000520260 RB1CC1Q8TDY2 1594 aa11.07□□□□□ -0.64
CTNNA1-220ENST00000520260 NACADO15069 1562 aa11.07□□□□□ -0.64
CTNNA1-220ENST00000520260 MYO15BQ96JP2 1530 aa11.04□□□□□ -0.64
CTNNA1-220ENST00000520260 DCAF8L2P0C7V8 631 aa11.01□□□□□ -0.65
CTNNA1-220ENST00000520260 ZCCHC6Q5VYS8 1495 aaKnown RBP11□□□□□ -0.65
CTNNA1-220ENST00000520260 DCAF1Q9Y4B6 1507 aa11□□□□□ -0.65
CTNNA1-220ENST00000520260 DMRT2Q9Y5R5 561 aa10.84□□□□□ -0.67
CTNNA1-220ENST00000520260 MAPK8IP2Q13387 824 aaPredicted RBP10.8□□□□□ -0.68
CTNNA1-220ENST00000520260 SHROOM4Q9ULL8 1493 aa10.73□□□□□ -0.69
CTNNA1-220ENST00000520260 SCRIBQ14160 1630 aa10.65□□□□□ -0.7
CTNNA1-220ENST00000520260 UNC13AQ9UPW8 1703 aa10.61□□□□□ -0.71
CTNNA1-220ENST00000520260 RNF39Q9H2S5 420 aa10.57□□□□□ -0.72
CTNNA1-220ENST00000520260 PABPN1Q86U42 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
CTNNA1-220ENST00000520260 BICRAQ9NZM4 1560 aa10.52□□□□□ -0.72
CTNNA1-220ENST00000520260 POTEHQ6S545 545 aa10.47□□□□□ -0.73
CTNNA1-220ENST00000520260 DCAF8L1A6NGE4 600 aa10.42□□□□□ -0.74
CTNNA1-220ENST00000520260 SCAF1Q9H7N4 1312 aaKnown RBP10.4□□□□□ -0.74
CTNNA1-220ENST00000520260 EIF4G1Q04637 1599 aaKnown RBP10.35□□□□□ -0.75
CTNNA1-220ENST00000520260 C1QBPQ07021 282 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-220ENST00000520260 BAZ1AQ9NRL2 1556 aaPredicted RBP10.31□□□□□ -0.76
CTNNA1-220ENST00000520260 CC2D2AQ9P2K1 1620 aa10.26□□□□□ -0.77
CTNNA1-220ENST00000520260 SMARCA2P51531 1590 aa10.25□□□□□ -0.77
CTNNA1-220ENST00000520260 CECR2Q9BXF3 1484 aa10.23□□□□□ -0.77
CTNNA1-220ENST00000520260 SMARCA4P51532 1647 aa10.22□□□□□ -0.77
CTNNA1-220ENST00000520260 HMGXB3Q12766 1538 aa10.16□□□□□ -0.78
CTNNA1-220ENST00000520260 NCAPD3P42695 1498 aa10.15□□□□□ -0.78
CTNNA1-220ENST00000520260 PEG3Q9GZU2 1588 aa10.14□□□□□ -0.79
CTNNA1-220ENST00000520260 BAZ1BQ9UIG0 1483 aaKnown RBP10.14□□□□□ -0.79
CTNNA1-220ENST00000520260 ATAD2BQ9ULI0 1458 aa10.13□□□□□ -0.79
CTNNA1-220ENST00000520260 DNAJC5BQ9UF47 199 aa10.13□□□□□ -0.79
CTNNA1-220ENST00000520260 HOXD11P31277 338 aaPredicted RBP10.12□□□□□ -0.79
CTNNA1-220ENST00000520260 MROH2BQ7Z745 1585 aa10.08□□□□□ -0.8
CTNNA1-220ENST00000520260 RSF1Q96T23 1441 aaPredicted RBP10.03□□□□□ -0.8
CTNNA1-220ENST00000520260 TOP2AP11388 1531 aaKnown RBP9.99□□□□□ -0.81
CTNNA1-220ENST00000520260 WIZO95785 1651 aa9.97□□□□□ -0.81
CTNNA1-220ENST00000520260 LAMC3Q9Y6N6 1575 aa9.93□□□□□ -0.82
CTNNA1-220ENST00000520260 ERCC6Q03468 1493 aa9.91□□□□□ -0.82
CTNNA1-220ENST00000520260 PDS5BQ9NTI5 1447 aa9.9□□□□□ -0.82
CTNNA1-220ENST00000520260 CADPSQ9ULU8 1353 aa9.88□□□□□ -0.83
CTNNA1-220ENST00000520260 SUPT5HO00267 1087 aaKnown RBP9.86□□□□□ -0.83
CTNNA1-220ENST00000520260 CFTRP13569 1480 aa9.81□□□□□ -0.84
CTNNA1-220ENST00000520260 RNF216Q9NWF9 866 aaPredicted RBP9.81□□□□□ -0.84
CTNNA1-220ENST00000520260 CCDC88BA6NC98 1476 aa9.79□□□□□ -0.84
CTNNA1-220ENST00000520260 CEP164Q9UPV0 1460 aa9.79□□□□□ -0.84
CTNNA1-220ENST00000520260 CUX2O14529 1486 aa9.78□□□□□ -0.84
CTNNA1-220ENST00000520260 PRDM2Q13029 1718 aa9.77□□□□□ -0.85
CTNNA1-220ENST00000520260 FANCD2Q9BXW9 1451 aa9.76□□□□□ -0.85
CTNNA1-220ENST00000520260 ABCC8Q09428 1581 aa9.75□□□□□ -0.85
CTNNA1-220ENST00000520260 NESP48681 1621 aa9.74□□□□□ -0.85
CTNNA1-220ENST00000520260 MRC2Q9UBG0 1479 aa9.73□□□□□ -0.85
CTNNA1-220ENST00000520260 PPP4R3CPQ6ZMV5 832 aa9.7□□□□□ -0.86
CTNNA1-220ENST00000520260 KIF21AQ7Z4S6 1674 aa9.69□□□□□ -0.86
CTNNA1-220ENST00000520260 CNKSR2Q8WXI2 1034 aa9.69□□□□□ -0.86
CTNNA1-220ENST00000520260 WDR62O43379 1518 aa9.66□□□□□ -0.86
CTNNA1-220ENST00000520260 THOC2Q8NI27 1593 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-220ENST00000520260 DSG3P32926 999 aa9.64□□□□□ -0.87
CTNNA1-220ENST00000520260 DNMBPQ6XZF7 1577 aa9.63□□□□□ -0.87
CTNNA1-220ENST00000520260 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.62□□□□□ -0.879e-8■□□□□ 9.6
CTNNA1-220ENST00000520260 IFT140Q96RY7 1462 aa9.59□□□□□ -0.87
CTNNA1-220ENST00000520260 TOPBP1Q92547 1522 aa9.57□□□□□ -0.88
CTNNA1-220ENST00000520260 URB2Q14146 1524 aaKnown RBP9.56□□□□□ -0.88
CTNNA1-220ENST00000520260 WDR97A6NE52 1622 aa9.56□□□□□ -0.88
CTNNA1-220ENST00000520260 WRNQ14191 1432 aaPredicted RBP eCLIP9.56□□□□□ -0.88
CTNNA1-220ENST00000520260 SOGA1O94964 1423 aa9.5□□□□□ -0.89
CTNNA1-220ENST00000520260 TOP2BQ02880 1626 aa9.49□□□□□ -0.89
CTNNA1-220ENST00000520260 POLA1P09884 1462 aaPredicted RBP9.49□□□□□ -0.89
CTNNA1-220ENST00000520260 FGD5Q6ZNL6 1462 aa9.49□□□□□ -0.89
CTNNA1-220ENST00000520260 SPINK5Q9NQ38 1064 aaPredicted RBP9.49□□□□□ -0.89
CTNNA1-220ENST00000520260 BIVM-ERCC5R4GMW8 1640 aa9.48□□□□□ -0.89
CTNNA1-220ENST00000520260 CUX1P39880 1505 aa9.47□□□□□ -0.89
CTNNA1-220ENST00000520260 CAPN15O75808 1086 aa9.47□□□□□ -0.89
CTNNA1-220ENST00000520260 ABCA10Q8WWZ4 1543 aa9.44□□□□□ -0.9
CTNNA1-220ENST00000520260 TARBP1Q13395 1621 aaKnown RBP9.42□□□□□ -0.9
CTNNA1-220ENST00000520260 EIF4G3O43432 1585 aaKnown RBP9.42□□□□□ -0.9
CTNNA1-220ENST00000520260 GRIN2BQ13224 1484 aa9.42□□□□□ -0.9
CTNNA1-220ENST00000520260 SP7Q8TDD2 431 aaPredicted RBP9.42□□□□□ -0.9
CTNNA1-220ENST00000520260 MAGI1Q96QZ7 1491 aaPredicted RBP9.41□□□□□ -0.9
CTNNA1-220ENST00000520260 TRIM41Q8WV44 630 aa9.41□□□□□ -0.9
CTNNA1-220ENST00000520260 SYNJ1O43426 1573 aa9.41□□□□□ -0.9
CTNNA1-220ENST00000520260 KIF27Q86VH2 1401 aa9.4□□□□□ -0.9
CTNNA1-220ENST00000520260 GAPVD1Q14C86 1478 aa9.4□□□□□ -0.91
CTNNA1-220ENST00000520260 RAD54L2Q9Y4B4 1467 aa9.39□□□□□ -0.91
CTNNA1-220ENST00000520260 CHMP7Q8WUX9 453 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-220ENST00000520260 U3KPZ7 1027 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-220ENST00000520260 TDRD9Q8NDG6 1382 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms