RNA–Protein interactions for RNA: ENST00000519583.5

CLK4-203, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,462 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-203ENST00000519583 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
CLK4-203ENST00000519583 CCDC180Q9P1Z9 1646 aa16.43■□□□□ 0.22
CLK4-203ENST00000519583 ABCC9O60706 1549 aa16.07■□□□□ 0.16
CLK4-203ENST00000519583 DCAF8L2P0C7V8 631 aa15.58■□□□□ 0.08
CLK4-203ENST00000519583 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
CLK4-203ENST00000519583 RB1CC1Q8TDY2 1594 aa15.45■□□□□ 0.06
CLK4-203ENST00000519583 NACADO15069 1562 aa15.45■□□□□ 0.06
CLK4-203ENST00000519583 MYO15BQ96JP2 1530 aa15.35■□□□□ 0.05
CLK4-203ENST00000519583 DCAF1Q9Y4B6 1507 aa15.33■□□□□ 0.04
CLK4-203ENST00000519583 UNC13AQ9UPW8 1703 aa15.08■□□□□ 0
CLK4-203ENST00000519583 PABPN1Q86U42 306 aaKnown RBP eCLIP15.06■□□□□ 0
CLK4-203ENST00000519583 SCRIBQ14160 1630 aa15.06■□□□□ 0
CLK4-203ENST00000519583 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
CLK4-203ENST00000519583 SHROOM4Q9ULL8 1493 aa14.8□□□□□ -0.04
CLK4-203ENST00000519583 DNAJC5BQ9UF47 199 aa14.67□□□□□ -0.06
CLK4-203ENST00000519583 EIF4G1Q04637 1599 aaKnown RBP14.59□□□□□ -0.07
CLK4-203ENST00000519583 CC2D2AQ9P2K1 1620 aa14.51□□□□□ -0.09
CLK4-203ENST00000519583 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
CLK4-203ENST00000519583 SMARCA4P51532 1647 aa14.38□□□□□ -0.11
CLK4-203ENST00000519583 BAZ1AQ9NRL2 1556 aaPredicted RBP14.38□□□□□ -0.11
CLK4-203ENST00000519583 MROH2BQ7Z745 1585 aa14.32□□□□□ -0.12
CLK4-203ENST00000519583 ATAD2BQ9ULI0 1458 aa14.29□□□□□ -0.12
CLK4-203ENST00000519583 SMARCA2P51531 1590 aa14.27□□□□□ -0.12
CLK4-203ENST00000519583 NCAPD3P42695 1498 aa14.26□□□□□ -0.13
CLK4-203ENST00000519583 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.13
CLK4-203ENST00000519583 BAZ1BQ9UIG0 1483 aaKnown RBP14.19□□□□□ -0.14
CLK4-203ENST00000519583 RSF1Q96T23 1441 aaPredicted RBP14.19□□□□□ -0.14
CLK4-203ENST00000519583 HMGXB3Q12766 1538 aa14.18□□□□□ -0.14
CLK4-203ENST00000519583 WIZO95785 1651 aa14.17□□□□□ -0.14
CLK4-203ENST00000519583 SUPT5HO00267 1087 aaKnown RBP14.03□□□□□ -0.16
CLK4-203ENST00000519583 TOP2AP11388 1531 aaKnown RBP14.01□□□□□ -0.17
CLK4-203ENST00000519583 NESP48681 1621 aa13.92□□□□□ -0.18
CLK4-203ENST00000519583 CADPSQ9ULU8 1353 aa13.87□□□□□ -0.19
CLK4-203ENST00000519583 CCDC88BA6NC98 1476 aa13.86□□□□□ -0.19
CLK4-203ENST00000519583 LAMC3Q9Y6N6 1575 aa13.86□□□□□ -0.19
CLK4-203ENST00000519583 ERCC6Q03468 1493 aa13.85□□□□□ -0.19
CLK4-203ENST00000519583 PDS5BQ9NTI5 1447 aa13.79□□□□□ -0.2
CLK4-203ENST00000519583 CFTRP13569 1480 aa13.79□□□□□ -0.2
CLK4-203ENST00000519583 KIF21AQ7Z4S6 1674 aa13.74□□□□□ -0.21
CLK4-203ENST00000519583 FANCD2Q9BXW9 1451 aa13.71□□□□□ -0.21
CLK4-203ENST00000519583 CEP164Q9UPV0 1460 aa13.69□□□□□ -0.22
CLK4-203ENST00000519583 PRDM2Q13029 1718 aa13.65□□□□□ -0.22
CLK4-203ENST00000519583 THOC2Q8NI27 1593 aaKnown RBP13.65□□□□□ -0.22
CLK4-203ENST00000519583 MRC2Q9UBG0 1479 aa13.64□□□□□ -0.23
CLK4-203ENST00000519583 CUX2O14529 1486 aa13.63□□□□□ -0.23
CLK4-203ENST00000519583 WDR62O43379 1518 aa13.57□□□□□ -0.24
CLK4-203ENST00000519583 URB2Q14146 1524 aaKnown RBP13.56□□□□□ -0.24
CLK4-203ENST00000519583 TOPBP1Q92547 1522 aa13.5□□□□□ -0.25
CLK4-203ENST00000519583 ABCC8Q09428 1581 aa13.49□□□□□ -0.25
CLK4-203ENST00000519583 DNMBPQ6XZF7 1577 aa13.48□□□□□ -0.25
CLK4-203ENST00000519583 CHIC1Q5VXU3 224 aa13.48□□□□□ -0.25
CLK4-203ENST00000519583 CUX1P39880 1505 aa13.43□□□□□ -0.26
CLK4-203ENST00000519583 POLA1P09884 1462 aaPredicted RBP13.39□□□□□ -0.27
CLK4-203ENST00000519583 IFT140Q96RY7 1462 aa13.39□□□□□ -0.27
CLK4-203ENST00000519583 WRNQ14191 1432 aaPredicted RBP eCLIP13.39□□□□□ -0.27
CLK4-203ENST00000519583 FGD5Q6ZNL6 1462 aa13.38□□□□□ -0.27
CLK4-203ENST00000519583 RAD54L2Q9Y4B4 1467 aa13.35□□□□□ -0.27
CLK4-203ENST00000519583 SOGA1O94964 1423 aa13.35□□□□□ -0.27
CLK4-203ENST00000519583 ZNF608Q9ULD9 1512 aaPredicted RBP13.34□□□□□ -0.27
CLK4-203ENST00000519583 SYNJ1O43426 1573 aa13.33□□□□□ -0.28
CLK4-203ENST00000519583 TARBP1Q13395 1621 aaKnown RBP13.32□□□□□ -0.28
CLK4-203ENST00000519583 TOP2BQ02880 1626 aa13.32□□□□□ -0.28
CLK4-203ENST00000519583 BIVM-ERCC5R4GMW8 1640 aa13.31□□□□□ -0.28
CLK4-203ENST00000519583 TDRD9Q8NDG6 1382 aaKnown RBP13.28□□□□□ -0.28
CLK4-203ENST00000519583 AQRO60306 1485 aaKnown RBP eCLIP13.28□□□□□ -0.281e-8■■■□□ 18.8
CLK4-203ENST00000519583 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
CLK4-203ENST00000519583 ABCA10Q8WWZ4 1543 aa13.23□□□□□ -0.29
CLK4-203ENST00000519583 WDR97A6NE52 1622 aa13.22□□□□□ -0.29
CLK4-203ENST00000519583 GAPVD1Q14C86 1478 aa13.19□□□□□ -0.3
CLK4-203ENST00000519583 GRIN2BQ13224 1484 aa13.17□□□□□ -0.3
CLK4-203ENST00000519583 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
CLK4-203ENST00000519583 ABCA5Q8WWZ7 1642 aa13.16□□□□□ -0.3
CLK4-203ENST00000519583 SNAPC4Q5SXM2 1469 aa13.15□□□□□ -0.3
CLK4-203ENST00000519583 FBLN2P98095 1184 aa13.15□□□□□ -0.3
CLK4-203ENST00000519583 DNAJC5Q9H3Z4 198 aa13.14□□□□□ -0.31
CLK4-203ENST00000519583 PBRM1Q86U86 1689 aa13.13□□□□□ -0.31
CLK4-203ENST00000519583 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
CLK4-203ENST00000519583 MAGI1Q96QZ7 1491 aaPredicted RBP13.12□□□□□ -0.31
CLK4-203ENST00000519583 CHMP7Q8WUX9 453 aaPredicted RBP13.11□□□□□ -0.31
CLK4-203ENST00000519583 KIF27Q86VH2 1401 aa13.11□□□□□ -0.31
CLK4-203ENST00000519583 CHD1O14646 1710 aa13.08□□□□□ -0.32
CLK4-203ENST00000519583 SYNJ2O15056 1496 aa13.07□□□□□ -0.32
CLK4-203ENST00000519583 ERICH3Q5RHP9 1530 aa13.07□□□□□ -0.32
CLK4-203ENST00000519583 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
CLK4-203ENST00000519583 ADAMTS12P58397 1594 aa13.04□□□□□ -0.32
CLK4-203ENST00000519583 IGF1RP08069 1367 aa13.03□□□□□ -0.32
CLK4-203ENST00000519583 RUSC2Q8N2Y8 1516 aa13.02□□□□□ -0.33
CLK4-203ENST00000519583 LOC105371045A0A1W2PR82 267 aa13.01□□□□□ -0.33
CLK4-203ENST00000519583 GRIN2AQ12879 1464 aa13□□□□□ -0.33
CLK4-203ENST00000519583 CARMIL1Q5VZK9 1371 aa12.97□□□□□ -0.33
CLK4-203ENST00000519583 FAM9AQ8IZU1 332 aaPredicted RBP12.97□□□□□ -0.33
CLK4-203ENST00000519583 CUL7Q14999 1698 aa12.96□□□□□ -0.33
CLK4-203ENST00000519583 NUP160Q12769 1436 aa12.93□□□□□ -0.34
CLK4-203ENST00000519583 CLASP1Q7Z460 1538 aa12.93□□□□□ -0.34
CLK4-203ENST00000519583 CEP170Q5SW79 1584 aa12.93□□□□□ -0.34
CLK4-203ENST00000519583 CSRNP3Q8WYN3 585 aa12.9□□□□□ -0.34
CLK4-203ENST00000519583 RAPGEF2Q9Y4G8 1499 aa12.89□□□□□ -0.35
CLK4-203ENST00000519583 EEA1Q15075 1411 aa12.89□□□□□ -0.35
CLK4-203ENST00000519583 ARHGEF11O15085 1522 aa12.88□□□□□ -0.35
CLK4-203ENST00000519583 RIMBP3CA6NJZ7 1639 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms