RNA–Protein interactions for RNA: ENST00000518711.1

SPIDR-208, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 3

Gene SPIDR, Length 621 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-208ENST00000518711 NISCHQ9Y2I1 1504 aa14.42□□□□□ -0.1
SPIDR-208ENST00000518711 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
SPIDR-208ENST00000518711 ABCC9O60706 1549 aa14.03□□□□□ -0.16
SPIDR-208ENST00000518711 DNAJC5Q9H3Z4 198 aa13.93□□□□□ -0.18
SPIDR-208ENST00000518711 CCDC180Q9P1Z9 1646 aa13.03□□□□□ -0.32
SPIDR-208ENST00000518711 PABPN1Q86U42 306 aaKnown RBP eCLIP12.93□□□□□ -0.34
SPIDR-208ENST00000518711 TRIM41Q8WV44 630 aa12.85□□□□□ -0.35
SPIDR-208ENST00000518711 RB1CC1Q8TDY2 1594 aa12.81□□□□□ -0.36
SPIDR-208ENST00000518711 CECR2Q9BXF3 1484 aa12.77□□□□□ -0.37
SPIDR-208ENST00000518711 CC2D2AQ9P2K1 1620 aa12.58□□□□□ -0.4
SPIDR-208ENST00000518711 CUX2O14529 1486 aa12.55□□□□□ -0.4
SPIDR-208ENST00000518711 BICRAQ9NZM4 1560 aa12.47□□□□□ -0.41
SPIDR-208ENST00000518711 NACADO15069 1562 aa12.44□□□□□ -0.42
SPIDR-208ENST00000518711 AEBP2Q6ZN18 517 aaPredicted RBP12.44□□□□□ -0.42
SPIDR-208ENST00000518711 UNC13AQ9UPW8 1703 aa12.42□□□□□ -0.42
SPIDR-208ENST00000518711 MYO15BQ96JP2 1530 aa12.29□□□□□ -0.44
SPIDR-208ENST00000518711 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
SPIDR-208ENST00000518711 EIF4G1Q04637 1599 aaKnown RBP12.26□□□□□ -0.45
SPIDR-208ENST00000518711 ERCC6Q03468 1493 aa12.21□□□□□ -0.46
SPIDR-208ENST00000518711 SHROOM4Q9ULL8 1493 aa12.19□□□□□ -0.46
SPIDR-208ENST00000518711 ILDR1Q86SU0 546 aaPredicted RBP12.15□□□□□ -0.46
SPIDR-208ENST00000518711 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
SPIDR-208ENST00000518711 CHIC1Q5VXU3 224 aa11.96□□□□□ -0.49
SPIDR-208ENST00000518711 TRHP20396 242 aaPredicted RBP11.93□□□□□ -0.5
SPIDR-208ENST00000518711 ZCCHC6Q5VYS8 1495 aaKnown RBP11.88□□□□□ -0.51
SPIDR-208ENST00000518711 OSCARQ8IYS5 282 aa11.87□□□□□ -0.51
SPIDR-208ENST00000518711 THOC2Q8NI27 1593 aaKnown RBP11.76□□□□□ -0.53
SPIDR-208ENST00000518711 SCRIBQ14160 1630 aa11.74□□□□□ -0.53
SPIDR-208ENST00000518711 RIMBP3CA6NJZ7 1639 aa11.73□□□□□ -0.53
SPIDR-208ENST00000518711 RIMBP3BA6NNM3 1639 aa11.73□□□□□ -0.53
SPIDR-208ENST00000518711 RIMBP3Q9UFD9 1639 aa11.73□□□□□ -0.53
SPIDR-208ENST00000518711 NESP48681 1621 aa11.71□□□□□ -0.53
SPIDR-208ENST00000518711 BAZ1AQ9NRL2 1556 aaPredicted RBP11.7□□□□□ -0.54
SPIDR-208ENST00000518711 CYB5RLQ6IPT4 315 aa11.68□□□□□ -0.54
SPIDR-208ENST00000518711 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
SPIDR-208ENST00000518711 SMARCA2P51531 1590 aa11.6□□□□□ -0.55
SPIDR-208ENST00000518711 NCAPD3P42695 1498 aa11.54□□□□□ -0.56
SPIDR-208ENST00000518711 PDS5BQ9NTI5 1447 aa11.45□□□□□ -0.58
SPIDR-208ENST00000518711 KIF21AQ7Z4S6 1674 aa11.45□□□□□ -0.58
SPIDR-208ENST00000518711 SOCS7O14512 581 aa11.42□□□□□ -0.58
SPIDR-208ENST00000518711 LMTK3Q96Q04 1460 aa11.42□□□□□ -0.58
SPIDR-208ENST00000518711 LAMC3Q9Y6N6 1575 aa11.41□□□□□ -0.58
SPIDR-208ENST00000518711 ARAP1Q96P48 1450 aa11.4□□□□□ -0.58
SPIDR-208ENST00000518711 MRC2Q9UBG0 1479 aa11.38□□□□□ -0.59
SPIDR-208ENST00000518711 FBXO41Q8TF61 875 aa11.38□□□□□ -0.59
SPIDR-208ENST00000518711 ATAD2BQ9ULI0 1458 aa11.38□□□□□ -0.59
SPIDR-208ENST00000518711 WDR62O43379 1518 aa11.37□□□□□ -0.59
SPIDR-208ENST00000518711 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
SPIDR-208ENST00000518711 KDM4FA0A1W2PPD8 638 aa11.31□□□□□ -0.6
SPIDR-208ENST00000518711 ILDR2Q71H61 639 aa11.28□□□□□ -0.6
SPIDR-208ENST00000518711 PEG3Q9GZU2 1588 aa11.24□□□□□ -0.61
SPIDR-208ENST00000518711 SMARCA4P51532 1647 aa11.24□□□□□ -0.61
SPIDR-208ENST00000518711 BAZ1BQ9UIG0 1483 aaKnown RBP11.22□□□□□ -0.61
SPIDR-208ENST00000518711 ERCC6L2Q5T890 1561 aa11.2□□□□□ -0.62
SPIDR-208ENST00000518711 RSF1Q96T23 1441 aaPredicted RBP11.19□□□□□ -0.62
SPIDR-208ENST00000518711 CADPSQ9ULU8 1353 aa11.16□□□□□ -0.62
SPIDR-208ENST00000518711 DISP3Q9P2K9 1392 aa11.13□□□□□ -0.63
SPIDR-208ENST00000518711 CEP164Q9UPV0 1460 aa11.11□□□□□ -0.63
SPIDR-208ENST00000518711 HECW2Q9P2P5 1572 aa11.09□□□□□ -0.63
SPIDR-208ENST00000518711 MROH2BQ7Z745 1585 aa11.04□□□□□ -0.64
SPIDR-208ENST00000518711 FBLN2P98095 1184 aa11.04□□□□□ -0.64
SPIDR-208ENST00000518711 ZNF608Q9ULD9 1512 aaPredicted RBP11.04□□□□□ -0.64
SPIDR-208ENST00000518711 FANCD2Q9BXW9 1451 aa11□□□□□ -0.65
SPIDR-208ENST00000518711 SYNJ2O15056 1496 aa11□□□□□ -0.65
SPIDR-208ENST00000518711 CHD1O14646 1710 aa10.98□□□□□ -0.65
SPIDR-208ENST00000518711 URB2Q14146 1524 aaKnown RBP10.97□□□□□ -0.65
SPIDR-208ENST00000518711 CFTRP13569 1480 aa10.95□□□□□ -0.66
SPIDR-208ENST00000518711 IFT140Q96RY7 1462 aa10.94□□□□□ -0.66
SPIDR-208ENST00000518711 GAPVD1Q14C86 1478 aa10.89□□□□□ -0.67
SPIDR-208ENST00000518711 ADGRL1O94910 1474 aa10.88□□□□□ -0.67
SPIDR-208ENST00000518711 CLASP1Q7Z460 1538 aa10.86□□□□□ -0.67
SPIDR-208ENST00000518711 KIF13AQ9H1H9 1805 aa10.86□□□□□ -0.67
SPIDR-208ENST00000518711 EIF4G3O43432 1585 aaKnown RBP10.86□□□□□ -0.67
SPIDR-208ENST00000518711 WIZO95785 1651 aa10.84□□□□□ -0.67
SPIDR-208ENST00000518711 KDM6BO15054 1643 aa10.83□□□□□ -0.68
SPIDR-208ENST00000518711 AQRO60306 1485 aaKnown RBP eCLIP10.82□□□□□ -0.68
SPIDR-208ENST00000518711 FAM69CQ0P6D2 419 aa10.82□□□□□ -0.68
SPIDR-208ENST00000518711 SPATA31D1Q6ZQQ2 1576 aa10.8□□□□□ -0.68
SPIDR-208ENST00000518711 TOP2AP11388 1531 aaKnown RBP10.78□□□□□ -0.68
SPIDR-208ENST00000518711 ABCC8Q09428 1581 aa10.77□□□□□ -0.68
SPIDR-208ENST00000518711 SYNJ1O43426 1573 aa10.77□□□□□ -0.69
SPIDR-208ENST00000518711 CHMP7Q8WUX9 453 aaPredicted RBP10.75□□□□□ -0.69
SPIDR-208ENST00000518711 ABCC10Q5T3U5 1492 aa10.72□□□□□ -0.69
SPIDR-208ENST00000518711 PRDM2Q13029 1718 aa10.7□□□□□ -0.7
SPIDR-208ENST00000518711 CERKQ8TCT0 537 aa10.7□□□□□ -0.7
SPIDR-208ENST00000518711 TOPBP1Q92547 1522 aa10.69□□□□□ -0.7
SPIDR-208ENST00000518711 CCDC88BA6NC98 1476 aa10.66□□□□□ -0.7
SPIDR-208ENST00000518711 SNAPC4Q5SXM2 1469 aa10.63□□□□□ -0.71
SPIDR-208ENST00000518711 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
SPIDR-208ENST00000518711 TARBP1Q13395 1621 aaKnown RBP10.61□□□□□ -0.71
SPIDR-208ENST00000518711 NPM1P06748 294 aaKnown RBP eCLIP10.6□□□□□ -0.71
SPIDR-208ENST00000518711 DIP2BQ9P265 1576 aa10.6□□□□□ -0.71
SPIDR-208ENST00000518711 WDR97A6NE52 1622 aa10.58□□□□□ -0.72
SPIDR-208ENST00000518711 TDRD9Q8NDG6 1382 aaKnown RBP10.58□□□□□ -0.72
SPIDR-208ENST00000518711 TSPOAP1O95153 1857 aa10.57□□□□□ -0.72
SPIDR-208ENST00000518711 POLA1P09884 1462 aaPredicted RBP10.57□□□□□ -0.72
SPIDR-208ENST00000518711 MAGI1Q96QZ7 1491 aaPredicted RBP10.56□□□□□ -0.72
SPIDR-208ENST00000518711 TOP2BQ02880 1626 aa10.56□□□□□ -0.72
SPIDR-208ENST00000518711 SOGA1O94964 1423 aa10.55□□□□□ -0.72
SPIDR-208ENST00000518711 MAPKBP1O60336 1514 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms