RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 NISCHQ9Y2I1 1504 aa20.73■□□□□ 0.91
CPNE4-213ENST00000515418 CCDC180Q9P1Z9 1646 aa17.99■□□□□ 0.47
CPNE4-213ENST00000515418 ZCCHC6Q5VYS8 1495 aaKnown RBP17.37■□□□□ 0.37
CPNE4-213ENST00000515418 DCAF8L2P0C7V8 631 aa17.35■□□□□ 0.37
CPNE4-213ENST00000515418 ABCC9O60706 1549 aa17.23■□□□□ 0.35
CPNE4-213ENST00000515418 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
CPNE4-213ENST00000515418 DCAF1Q9Y4B6 1507 aa17.04■□□□□ 0.32
CPNE4-213ENST00000515418 MYO15BQ96JP2 1530 aa16.83■□□□□ 0.28
CPNE4-213ENST00000515418 NACADO15069 1562 aa16.8■□□□□ 0.28
CPNE4-213ENST00000515418 RB1CC1Q8TDY2 1594 aa16.68■□□□□ 0.26
CPNE4-213ENST00000515418 SCRIBQ14160 1630 aa16.67■□□□□ 0.26
CPNE4-213ENST00000515418 SUPT5HO00267 1087 aaKnown RBP16.42■□□□□ 0.22
CPNE4-213ENST00000515418 UNC13AQ9UPW8 1703 aa16.4■□□□□ 0.22
CPNE4-213ENST00000515418 PABPN1Q86U42 306 aaKnown RBP eCLIP16.32■□□□□ 0.2
CPNE4-213ENST00000515418 BICRAQ9NZM4 1560 aa16.23■□□□□ 0.19
CPNE4-213ENST00000515418 CECR2Q9BXF3 1484 aa16.19■□□□□ 0.18
CPNE4-213ENST00000515418 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
CPNE4-213ENST00000515418 MROH2BQ7Z745 1585 aa16.06■□□□□ 0.16
CPNE4-213ENST00000515418 BAZ1AQ9NRL2 1556 aaPredicted RBP15.97■□□□□ 0.15
CPNE4-213ENST00000515418 WIZO95785 1651 aa15.94■□□□□ 0.14
CPNE4-213ENST00000515418 SMARCA4P51532 1647 aa15.93■□□□□ 0.14
CPNE4-213ENST00000515418 EIF4G1Q04637 1599 aaKnown RBP15.73■□□□□ 0.11
CPNE4-213ENST00000515418 ATAD2BQ9ULI0 1458 aa15.7■□□□□ 0.1
CPNE4-213ENST00000515418 TOP2AP11388 1531 aaKnown RBP15.68■□□□□ 0.1
CPNE4-213ENST00000515418 PEG3Q9GZU2 1588 aa15.68■□□□□ 0.1
CPNE4-213ENST00000515418 CHIC1Q5VXU3 224 aa15.64■□□□□ 0.09
CPNE4-213ENST00000515418 SMARCA2P51531 1590 aa15.63■□□□□ 0.09
CPNE4-213ENST00000515418 CCDC88BA6NC98 1476 aa15.6■□□□□ 0.09
CPNE4-213ENST00000515418 BAZ1BQ9UIG0 1483 aaKnown RBP15.6■□□□□ 0.09
CPNE4-213ENST00000515418 NCAPD3P42695 1498 aa15.55■□□□□ 0.08
CPNE4-213ENST00000515418 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
CPNE4-213ENST00000515418 HMGXB3Q12766 1538 aa15.46■□□□□ 0.07
CPNE4-213ENST00000515418 TRIM41Q8WV44 630 aa15.37■□□□□ 0.05
CPNE4-213ENST00000515418 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
CPNE4-213ENST00000515418 ABCC8Q09428 1581 aa15.29■□□□□ 0.04
CPNE4-213ENST00000515418 CFTRP13569 1480 aa15.2■□□□□ 0.02
CPNE4-213ENST00000515418 FAM9AQ8IZU1 332 aaPredicted RBP15.18■□□□□ 0.02
CPNE4-213ENST00000515418 CADPSQ9ULU8 1353 aa15.18■□□□□ 0.02
CPNE4-213ENST00000515418 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.02
CPNE4-213ENST00000515418 LOC105371045A0A1W2PR82 267 aa15.13■□□□□ 0.01
CPNE4-213ENST00000515418 NESP48681 1621 aa15.12■□□□□ 0.01
CPNE4-213ENST00000515418 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
CPNE4-213ENST00000515418 PRDM2Q13029 1718 aa15.05■□□□□ 0
CPNE4-213ENST00000515418 EHMT2Q96KQ7 1210 aa15.05■□□□□ -0
CPNE4-213ENST00000515418 POTEDQ86YR6 584 aa15.02■□□□□ -0
CPNE4-213ENST00000515418 SOGA1O94964 1423 aa15.02□□□□□ -0.01
CPNE4-213ENST00000515418 FANCD2Q9BXW9 1451 aa15.01□□□□□ -0.01
CPNE4-213ENST00000515418 CUX1P39880 1505 aa15□□□□□ -0.01
CPNE4-213ENST00000515418 LAMC3Q9Y6N6 1575 aa14.99□□□□□ -0.01
CPNE4-213ENST00000515418 TOP2BQ02880 1626 aa14.99□□□□□ -0.01
CPNE4-213ENST00000515418 RUSC2Q8N2Y8 1516 aa14.98□□□□□ -0.01
CPNE4-213ENST00000515418 BIVM-ERCC5R4GMW8 1640 aa14.95□□□□□ -0.02
CPNE4-213ENST00000515418 PDS5BQ9NTI5 1447 aa14.91□□□□□ -0.02
CPNE4-213ENST00000515418 CSRNP3Q8WYN3 585 aa14.89□□□□□ -0.03
CPNE4-213ENST00000515418 CEP164Q9UPV0 1460 aa14.89□□□□□ -0.03
CPNE4-213ENST00000515418 KIF21AQ7Z4S6 1674 aa14.88□□□□□ -0.03
CPNE4-213ENST00000515418 FGD5Q6ZNL6 1462 aa14.84□□□□□ -0.03
CPNE4-213ENST00000515418 URB2Q14146 1524 aaKnown RBP14.84□□□□□ -0.03
CPNE4-213ENST00000515418 TOPBP1Q92547 1522 aa14.84□□□□□ -0.03
CPNE4-213ENST00000515418 EEA1Q15075 1411 aa14.83□□□□□ -0.04
CPNE4-213ENST00000515418 DNMBPQ6XZF7 1577 aa14.82□□□□□ -0.04
CPNE4-213ENST00000515418 RAD54L2Q9Y4B4 1467 aa14.78□□□□□ -0.04
CPNE4-213ENST00000515418 POLA1P09884 1462 aaPredicted RBP14.77□□□□□ -0.04
CPNE4-213ENST00000515418 CUX2O14529 1486 aa14.75□□□□□ -0.05
CPNE4-213ENST00000515418 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
CPNE4-213ENST00000515418 UBTFP17480 764 aaKnown RBP14.74□□□□□ -0.05
CPNE4-213ENST00000515418 ERCC6Q03468 1493 aa14.73□□□□□ -0.05
CPNE4-213ENST00000515418 MRC2Q9UBG0 1479 aa14.72□□□□□ -0.05
CPNE4-213ENST00000515418 IGF1RP08069 1367 aa14.68□□□□□ -0.06
CPNE4-213ENST00000515418 RAPGEF2Q9Y4G8 1499 aa14.68□□□□□ -0.06
CPNE4-213ENST00000515418 GOLGA3Q08378 1498 aa14.67□□□□□ -0.06
CPNE4-213ENST00000515418 ABCA10Q8WWZ4 1543 aa14.67□□□□□ -0.06
CPNE4-213ENST00000515418 TDRD9Q8NDG6 1382 aaKnown RBP14.67□□□□□ -0.06
CPNE4-213ENST00000515418 KIF21BO75037 1637 aa14.65□□□□□ -0.06
CPNE4-213ENST00000515418 TNIKQ9UKE5 1360 aa14.64□□□□□ -0.07
CPNE4-213ENST00000515418 PRXQ9BXM0 1461 aa14.64□□□□□ -0.07
CPNE4-213ENST00000515418 RANGAP1P46060 587 aaPredicted RBP14.62□□□□□ -0.07
CPNE4-213ENST00000515418 WDR62O43379 1518 aa14.62□□□□□ -0.07
CPNE4-213ENST00000515418 TARBP1Q13395 1621 aaKnown RBP14.6□□□□□ -0.07
CPNE4-213ENST00000515418 CARMIL1Q5VZK9 1371 aa14.59□□□□□ -0.07
CPNE4-213ENST00000515418 WDR97A6NE52 1622 aa14.59□□□□□ -0.07
CPNE4-213ENST00000515418 THOC2Q8NI27 1593 aaKnown RBP14.59□□□□□ -0.07
CPNE4-213ENST00000515418 CEP162Q5TB80 1403 aa14.59□□□□□ -0.07
CPNE4-213ENST00000515418 AQRO60306 1485 aaKnown RBP eCLIP14.56□□□□□ -0.08
CPNE4-213ENST00000515418 GAPVD1Q14C86 1478 aa14.56□□□□□ -0.08
CPNE4-213ENST00000515418 ERICH3Q5RHP9 1530 aa14.56□□□□□ -0.08
CPNE4-213ENST00000515418 ABCA5Q8WWZ7 1642 aa14.54□□□□□ -0.08
CPNE4-213ENST00000515418 ZNF608Q9ULD9 1512 aaPredicted RBP14.54□□□□□ -0.08
CPNE4-213ENST00000515418 IFT140Q96RY7 1462 aa14.52□□□□□ -0.09
CPNE4-213ENST00000515418 CLIP1P30622 1438 aa14.48□□□□□ -0.09
CPNE4-213ENST00000515418 PPARGC1BQ86YN6 1023 aaKnown RBP14.47□□□□□ -0.09
CPNE4-213ENST00000515418 CUL7Q14999 1698 aa14.45□□□□□ -0.1
CPNE4-213ENST00000515418 PBRM1Q86U86 1689 aa14.44□□□□□ -0.1
CPNE4-213ENST00000515418 GRIN2BQ13224 1484 aa14.43□□□□□ -0.1
CPNE4-213ENST00000515418 EIF4G3O43432 1585 aaKnown RBP14.41□□□□□ -0.1
CPNE4-213ENST00000515418 FHAD1B1AJZ9 1412 aa14.38□□□□□ -0.11
CPNE4-213ENST00000515418 PCGF6Q9BYE7 350 aa14.37□□□□□ -0.11
CPNE4-213ENST00000515418 P3H3Q8IVL6 736 aa14.36□□□□□ -0.11
CPNE4-213ENST00000515418 SNAPC4Q5SXM2 1469 aa14.36□□□□□ -0.11
CPNE4-213ENST00000515418 TTBK1Q5TCY1 1321 aaPredicted RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms