RNA–Protein interactions for RNA: ENST00000514344.5

CHD1-211, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 2,955 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-211ENST00000514344 AEBP2Q6ZN18 517 aaPredicted RBP8.84□□□□□ -0.99
CHD1-211ENST00000514344 NISCHQ9Y2I1 1504 aa8.52□□□□□ -1.05
CHD1-211ENST00000514344 CHIC1Q5VXU3 224 aa8.37□□□□□ -1.07
CHD1-211ENST00000514344 ABCC9O60706 1549 aa8.25□□□□□ -1.09
CHD1-211ENST00000514344 DNAJC5BQ9UF47 199 aa8.08□□□□□ -1.12
CHD1-211ENST00000514344 POTEDQ86YR6 584 aa7.98□□□□□ -1.13
CHD1-211ENST00000514344 CCDC180Q9P1Z9 1646 aa7.75□□□□□ -1.17
CHD1-211ENST00000514344 SENP3Q9H4L4 574 aaPredicted RBP7.75□□□□□ -1.17
CHD1-211ENST00000514344 PABPN1Q86U42 306 aaKnown RBP eCLIP7.65□□□□□ -1.18
CHD1-211ENST00000514344 DNAJC5Q9H3Z4 198 aa7.65□□□□□ -1.18
CHD1-211ENST00000514344 RB1CC1Q8TDY2 1594 aa7.6□□□□□ -1.19
CHD1-211ENST00000514344 DCAF8L2P0C7V8 631 aa7.51□□□□□ -1.21
CHD1-211ENST00000514344 PHF23Q9BUL5 403 aaPredicted RBP7.51□□□□□ -1.21
CHD1-211ENST00000514344 UNC13AQ9UPW8 1703 aa7.45□□□□□ -1.22
CHD1-211ENST00000514344 NACADO15069 1562 aa7.44□□□□□ -1.22
CHD1-211ENST00000514344 CECR2Q9BXF3 1484 aa7.44□□□□□ -1.22
CHD1-211ENST00000514344 BICRAQ9NZM4 1560 aa7.41□□□□□ -1.22
CHD1-211ENST00000514344 CC2D2AQ9P2K1 1620 aa7.39□□□□□ -1.23
CHD1-211ENST00000514344 EIF4G1Q04637 1599 aaKnown RBP7.27□□□□□ -1.25
CHD1-211ENST00000514344 TRIM41Q8WV44 630 aa7.26□□□□□ -1.25
CHD1-211ENST00000514344 FOXD1Q16676 465 aa7.23□□□□□ -1.25
CHD1-211ENST00000514344 SHROOM4Q9ULL8 1493 aa7.18□□□□□ -1.26
CHD1-211ENST00000514344 CUX2O14529 1486 aa7.18□□□□□ -1.26
CHD1-211ENST00000514344 MYO15BQ96JP2 1530 aa7.16□□□□□ -1.26
CHD1-211ENST00000514344 SCRIBQ14160 1630 aa7.15□□□□□ -1.27
CHD1-211ENST00000514344 ERCC6Q03468 1493 aa7.14□□□□□ -1.27
CHD1-211ENST00000514344 MSH5O43196 834 aa7.11□□□□□ -1.27
CHD1-211ENST00000514344 NESP48681 1621 aa6.98□□□□□ -1.29
CHD1-211ENST00000514344 ZCCHC6Q5VYS8 1495 aaKnown RBP6.97□□□□□ -1.29
CHD1-211ENST00000514344 DCAF1Q9Y4B6 1507 aa6.94□□□□□ -1.3
CHD1-211ENST00000514344 THOC2Q8NI27 1593 aaKnown RBP6.92□□□□□ -1.3
CHD1-211ENST00000514344 SMARCA2P51531 1590 aa6.91□□□□□ -1.3
CHD1-211ENST00000514344 NCAPD3P42695 1498 aa6.88□□□□□ -1.31
CHD1-211ENST00000514344 OSCARQ8IYS5 282 aa6.85□□□□□ -1.31
CHD1-211ENST00000514344 KIF21AQ7Z4S6 1674 aa6.84□□□□□ -1.31
CHD1-211ENST00000514344 TRHP20396 242 aaPredicted RBP6.84□□□□□ -1.32
CHD1-211ENST00000514344 ATAD2BQ9ULI0 1458 aa6.83□□□□□ -1.32
CHD1-211ENST00000514344 BAZ1AQ9NRL2 1556 aaPredicted RBP6.83□□□□□ -1.32
CHD1-211ENST00000514344 LAMC3Q9Y6N6 1575 aa6.79□□□□□ -1.32
CHD1-211ENST00000514344 HMGXB3Q12766 1538 aa6.79□□□□□ -1.32
CHD1-211ENST00000514344 PDS5BQ9NTI5 1447 aa6.78□□□□□ -1.32
CHD1-211ENST00000514344 RIMBP3CA6NJZ7 1639 aa6.78□□□□□ -1.32
CHD1-211ENST00000514344 RIMBP3BA6NNM3 1639 aa6.78□□□□□ -1.32
CHD1-211ENST00000514344 RIMBP3Q9UFD9 1639 aa6.78□□□□□ -1.32
CHD1-211ENST00000514344 CYB5RLQ6IPT4 315 aa6.77□□□□□ -1.33
CHD1-211ENST00000514344 BAZ1BQ9UIG0 1483 aaKnown RBP6.77□□□□□ -1.33
CHD1-211ENST00000514344 MRC2Q9UBG0 1479 aa6.75□□□□□ -1.33
CHD1-211ENST00000514344 ARHGEF11O15085 1522 aa6.73□□□□□ -1.33
CHD1-211ENST00000514344 SMARCA4P51532 1647 aa6.73□□□□□ -1.33
CHD1-211ENST00000514344 WDR62O43379 1518 aa6.73□□□□□ -1.33
CHD1-211ENST00000514344 CADPSQ9ULU8 1353 aa6.68□□□□□ -1.34
CHD1-211ENST00000514344 CEP164Q9UPV0 1460 aa6.66□□□□□ -1.34
CHD1-211ENST00000514344 ILDR1Q86SU0 546 aaPredicted RBP6.66□□□□□ -1.34
CHD1-211ENST00000514344 ARAP1Q96P48 1450 aa6.63□□□□□ -1.35
CHD1-211ENST00000514344 FANCD2Q9BXW9 1451 aa6.63□□□□□ -1.35
CHD1-211ENST00000514344 PIAS4Q8N2W9 510 aaPredicted RBP6.63□□□□□ -1.35
CHD1-211ENST00000514344 PEG3Q9GZU2 1588 aa6.62□□□□□ -1.35
CHD1-211ENST00000514344 ZNF608Q9ULD9 1512 aaPredicted RBP6.6□□□□□ -1.35
CHD1-211ENST00000514344 FBLN2P98095 1184 aa6.6□□□□□ -1.35
CHD1-211ENST00000514344 MROH2BQ7Z745 1585 aa6.59□□□□□ -1.35
CHD1-211ENST00000514344 URB2Q14146 1524 aaKnown RBP6.59□□□□□ -1.35
CHD1-211ENST00000514344 CHD1O14646 1710 aa6.54□□□□□ -1.36
CHD1-211ENST00000514344 RSF1Q96T23 1441 aaPredicted RBP6.52□□□□□ -1.37
CHD1-211ENST00000514344 EIF4G3O43432 1585 aaKnown RBP6.52□□□□□ -1.37
CHD1-211ENST00000514344 CFTRP13569 1480 aa6.52□□□□□ -1.37
CHD1-211ENST00000514344 IFT140Q96RY7 1462 aa6.51□□□□□ -1.37
CHD1-211ENST00000514344 WIZO95785 1651 aa6.5□□□□□ -1.37
CHD1-211ENST00000514344 AQRO60306 1485 aaKnown RBP eCLIP6.5□□□□□ -1.374e-7■■■■■ 27.6
CHD1-211ENST00000514344 CACNB1Q02641 598 aaPredicted RBP6.47□□□□□ -1.37
CHD1-211ENST00000514344 TOPBP1Q92547 1522 aa6.45□□□□□ -1.38
CHD1-211ENST00000514344 KDM4FA0A1W2PPD8 638 aa6.45□□□□□ -1.38
CHD1-211ENST00000514344 CHMP7Q8WUX9 453 aaPredicted RBP6.43□□□□□ -1.38
CHD1-211ENST00000514344 GAPVD1Q14C86 1478 aa6.43□□□□□ -1.38
CHD1-211ENST00000514344 CLASP1Q7Z460 1538 aa6.42□□□□□ -1.38
CHD1-211ENST00000514344 TDRD9Q8NDG6 1382 aaKnown RBP6.41□□□□□ -1.38
CHD1-211ENST00000514344 TARBP1Q13395 1621 aaKnown RBP6.4□□□□□ -1.38
CHD1-211ENST00000514344 SNAPC4Q5SXM2 1469 aa6.4□□□□□ -1.38
CHD1-211ENST00000514344 SYNJ1O43426 1573 aa6.4□□□□□ -1.39
CHD1-211ENST00000514344 PRDM2Q13029 1718 aa6.39□□□□□ -1.39
CHD1-211ENST00000514344 RAD54L2Q9Y4B4 1467 aa6.38□□□□□ -1.39
CHD1-211ENST00000514344 KIF13AQ9H1H9 1805 aa6.37□□□□□ -1.39
CHD1-211ENST00000514344 DNMBPQ6XZF7 1577 aa6.37□□□□□ -1.39
CHD1-211ENST00000514344 POLA1P09884 1462 aaPredicted RBP6.37□□□□□ -1.39
CHD1-211ENST00000514344 ABCC8Q09428 1581 aa6.36□□□□□ -1.39
CHD1-211ENST00000514344 ERCC6L2Q5T890 1561 aa6.36□□□□□ -1.39
CHD1-211ENST00000514344 FAM69CQ0P6D2 419 aa6.35□□□□□ -1.39
CHD1-211ENST00000514344 TOP2AP11388 1531 aaKnown RBP6.35□□□□□ -1.39
CHD1-211ENST00000514344 SOGA1O94964 1423 aa6.34□□□□□ -1.39
CHD1-211ENST00000514344 HECW2Q9P2P5 1572 aa6.33□□□□□ -1.4
CHD1-211ENST00000514344 SYNJ2O15056 1496 aa6.33□□□□□ -1.4
CHD1-211ENST00000514344 MAGI1Q96QZ7 1491 aaPredicted RBP6.33□□□□□ -1.4
CHD1-211ENST00000514344 FBXO41Q8TF61 875 aa6.32□□□□□ -1.4
CHD1-211ENST00000514344 KDM6BO15054 1643 aa6.32□□□□□ -1.4
CHD1-211ENST00000514344 CCDC88BA6NC98 1476 aa6.31□□□□□ -1.4
CHD1-211ENST00000514344 LMTK3Q96Q04 1460 aa6.31□□□□□ -1.4
CHD1-211ENST00000514344 GRIN2BQ13224 1484 aa6.3□□□□□ -1.4
CHD1-211ENST00000514344 TSPOAP1O95153 1857 aa6.29□□□□□ -1.4
CHD1-211ENST00000514344 ADGRL1O94910 1474 aa6.29□□□□□ -1.4
CHD1-211ENST00000514344 FGD5Q6ZNL6 1462 aa6.28□□□□□ -1.4
CHD1-211ENST00000514344 CEP170Q5SW79 1584 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms