RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 NISCHQ9Y2I1 1504 aa22.69■■□□□ 1.22
PDGFC-209ENST00000513664 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
PDGFC-209ENST00000513664 ABCC9O60706 1549 aa19.5■□□□□ 0.71
PDGFC-209ENST00000513664 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
PDGFC-209ENST00000513664 NACADO15069 1562 aa18.93■□□□□ 0.62
PDGFC-209ENST00000513664 RB1CC1Q8TDY2 1594 aa18.9■□□□□ 0.62
PDGFC-209ENST00000513664 MYO15BQ96JP2 1530 aa18.89■□□□□ 0.61
PDGFC-209ENST00000513664 DCAF8L2P0C7V8 631 aa18.86■□□□□ 0.61
PDGFC-209ENST00000513664 DCAF1Q9Y4B6 1507 aa18.84■□□□□ 0.61
PDGFC-209ENST00000513664 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.53
PDGFC-209ENST00000513664 SCRIBQ14160 1630 aa18.33■□□□□ 0.52
PDGFC-209ENST00000513664 BICRAQ9NZM4 1560 aa18.25■□□□□ 0.51
PDGFC-209ENST00000513664 PABPN1Q86U42 306 aaKnown RBP eCLIP18.22■□□□□ 0.51
PDGFC-209ENST00000513664 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
PDGFC-209ENST00000513664 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
PDGFC-209ENST00000513664 DNAJC5BQ9UF47 199 aa17.71■□□□□ 0.43
PDGFC-209ENST00000513664 CC2D2AQ9P2K1 1620 aa17.67■□□□□ 0.42
PDGFC-209ENST00000513664 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
PDGFC-209ENST00000513664 CECR2Q9BXF3 1484 aa17.6■□□□□ 0.41
PDGFC-209ENST00000513664 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
PDGFC-209ENST00000513664 SMARCA2P51531 1590 aa17.48■□□□□ 0.39
PDGFC-209ENST00000513664 MROH2BQ7Z745 1585 aa17.45■□□□□ 0.38
PDGFC-209ENST00000513664 ATAD2BQ9ULI0 1458 aa17.44■□□□□ 0.38
PDGFC-209ENST00000513664 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
PDGFC-209ENST00000513664 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
PDGFC-209ENST00000513664 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
PDGFC-209ENST00000513664 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
PDGFC-209ENST00000513664 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
PDGFC-209ENST00000513664 WIZO95785 1651 aa17.26■□□□□ 0.35
PDGFC-209ENST00000513664 TOP2AP11388 1531 aaKnown RBP17.14■□□□□ 0.33
PDGFC-209ENST00000513664 LAMC3Q9Y6N6 1575 aa16.98■□□□□ 0.31
PDGFC-209ENST00000513664 SUPT5HO00267 1087 aaKnown RBP16.96■□□□□ 0.31
PDGFC-209ENST00000513664 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
PDGFC-209ENST00000513664 CCDC88BA6NC98 1476 aa16.92■□□□□ 0.3
PDGFC-209ENST00000513664 NESP48681 1621 aa16.88■□□□□ 0.29
PDGFC-209ENST00000513664 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
PDGFC-209ENST00000513664 CFTRP13569 1480 aa16.86■□□□□ 0.29
PDGFC-209ENST00000513664 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
PDGFC-209ENST00000513664 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
PDGFC-209ENST00000513664 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
PDGFC-209ENST00000513664 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
PDGFC-209ENST00000513664 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
PDGFC-209ENST00000513664 CUX2O14529 1486 aa16.66■□□□□ 0.26
PDGFC-209ENST00000513664 THOC2Q8NI27 1593 aaKnown RBP16.65■□□□□ 0.26
PDGFC-209ENST00000513664 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
PDGFC-209ENST00000513664 WDR62O43379 1518 aa16.59■□□□□ 0.25
PDGFC-209ENST00000513664 ABCC8Q09428 1581 aa16.55■□□□□ 0.24
PDGFC-209ENST00000513664 URB2Q14146 1524 aaKnown RBP16.51■□□□□ 0.23
PDGFC-209ENST00000513664 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
PDGFC-209ENST00000513664 TOPBP1Q92547 1522 aa16.46■□□□□ 0.23
PDGFC-209ENST00000513664 CUX1P39880 1505 aa16.37■□□□□ 0.21
PDGFC-209ENST00000513664 IFT140Q96RY7 1462 aa16.36■□□□□ 0.21
PDGFC-209ENST00000513664 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
PDGFC-209ENST00000513664 POLA1P09884 1462 aaPredicted RBP16.33■□□□□ 0.2
PDGFC-209ENST00000513664 TOP2BQ02880 1626 aa16.31■□□□□ 0.2
PDGFC-209ENST00000513664 FGD5Q6ZNL6 1462 aa16.31■□□□□ 0.2
PDGFC-209ENST00000513664 BIVM-ERCC5R4GMW8 1640 aa16.3■□□□□ 0.2
PDGFC-209ENST00000513664 SOGA1O94964 1423 aa16.28■□□□□ 0.2
PDGFC-209ENST00000513664 TARBP1Q13395 1621 aaKnown RBP16.27■□□□□ 0.2
PDGFC-209ENST00000513664 SYNJ1O43426 1573 aa16.26■□□□□ 0.19
PDGFC-209ENST00000513664 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
PDGFC-209ENST00000513664 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
PDGFC-209ENST00000513664 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
PDGFC-209ENST00000513664 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
PDGFC-209ENST00000513664 EIF4G3O43432 1585 aaKnown RBP16.18■□□□□ 0.18
PDGFC-209ENST00000513664 AQRO60306 1485 aaKnown RBP eCLIP16.14■□□□□ 0.17
PDGFC-209ENST00000513664 TDRD9Q8NDG6 1382 aaKnown RBP16.13■□□□□ 0.17
PDGFC-209ENST00000513664 GAPVD1Q14C86 1478 aa16.1■□□□□ 0.17
PDGFC-209ENST00000513664 ABCA5Q8WWZ7 1642 aa16.1■□□□□ 0.17
PDGFC-209ENST00000513664 GRIN2BQ13224 1484 aa16.1■□□□□ 0.17
PDGFC-209ENST00000513664 TRIM41Q8WV44 630 aa16.08■□□□□ 0.16
PDGFC-209ENST00000513664 MAGI1Q96QZ7 1491 aaPredicted RBP16.05■□□□□ 0.16
PDGFC-209ENST00000513664 PBRM1Q86U86 1689 aa16.04■□□□□ 0.16
PDGFC-209ENST00000513664 KIF27Q86VH2 1401 aa16.02■□□□□ 0.16
PDGFC-209ENST00000513664 ERICH3Q5RHP9 1530 aa16.02■□□□□ 0.15
PDGFC-209ENST00000513664 SNAPC4Q5SXM2 1469 aa16.01■□□□□ 0.15
PDGFC-209ENST00000513664 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
PDGFC-209ENST00000513664 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
PDGFC-209ENST00000513664 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
PDGFC-209ENST00000513664 FBLN2P98095 1184 aa15.94■□□□□ 0.14
PDGFC-209ENST00000513664 FHAD1B1AJZ9 1412 aa15.94■□□□□ 0.14
PDGFC-209ENST00000513664 DNAJC5Q9H3Z4 198 aa15.93■□□□□ 0.14
PDGFC-209ENST00000513664 CHD1O14646 1710 aa15.93■□□□□ 0.14
PDGFC-209ENST00000513664 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
PDGFC-209ENST00000513664 CHIC1Q5VXU3 224 aa15.92■□□□□ 0.14
PDGFC-209ENST00000513664 CUL7Q14999 1698 aa15.91■□□□□ 0.14
PDGFC-209ENST00000513664 IGF1RP08069 1367 aa15.9■□□□□ 0.14
PDGFC-209ENST00000513664 GRIN2AQ12879 1464 aa15.87■□□□□ 0.13
PDGFC-209ENST00000513664 EEA1Q15075 1411 aa15.85■□□□□ 0.13
PDGFC-209ENST00000513664 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
PDGFC-209ENST00000513664 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
PDGFC-209ENST00000513664 NUP160Q12769 1436 aa15.79■□□□□ 0.12
PDGFC-209ENST00000513664 CLASP1Q7Z460 1538 aa15.78■□□□□ 0.12
PDGFC-209ENST00000513664 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
PDGFC-209ENST00000513664 CEP170Q5SW79 1584 aa15.75■□□□□ 0.11
PDGFC-209ENST00000513664 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
PDGFC-209ENST00000513664 PRXQ9BXM0 1461 aa15.72■□□□□ 0.11
PDGFC-209ENST00000513664 KIAA0586Q9BVV6 1533 aa15.7■□□□□ 0.1
PDGFC-209ENST00000513664 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
PDGFC-209ENST00000513664 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms