RNA–Protein interactions for RNA: ENST00000513318.1

HMGXB3-204, Transcript of HMG-box containing 3, humanhuman

TSL 3

Gene HMGXB3, Length 749 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-204ENST00000513318 AEBP2Q6ZN18 517 aaPredicted RBP19.5■□□□□ 0.71
HMGXB3-204ENST00000513318 CHIC1Q5VXU3 224 aa19■□□□□ 0.63
HMGXB3-204ENST00000513318 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
HMGXB3-204ENST00000513318 PHF23Q9BUL5 403 aaPredicted RBP16.75■□□□□ 0.27
HMGXB3-204ENST00000513318 SENP3Q9H4L4 574 aaPredicted RBP16.48■□□□□ 0.23
HMGXB3-204ENST00000513318 CCDC180Q9P1Z9 1646 aa16.16■□□□□ 0.18
HMGXB3-204ENST00000513318 ABCC9O60706 1549 aa15.44■□□□□ 0.06
HMGXB3-204ENST00000513318 PLPPR3Q6T4P5 718 aa15.39■□□□□ 0.05
HMGXB3-204ENST00000513318 FOXD1Q16676 465 aa15.34■□□□□ 0.05
HMGXB3-204ENST00000513318 ZCCHC6Q5VYS8 1495 aaKnown RBP15.18■□□□□ 0.02
HMGXB3-204ENST00000513318 DCAF1Q9Y4B6 1507 aa15.06■□□□□ 0
HMGXB3-204ENST00000513318 NACADO15069 1562 aa15.06■□□□□ 0
HMGXB3-204ENST00000513318 MYO15BQ96JP2 1530 aa15.04■□□□□ -0
HMGXB3-204ENST00000513318 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
HMGXB3-204ENST00000513318 DCAF8L2P0C7V8 631 aa14.92□□□□□ -0.02
HMGXB3-204ENST00000513318 UNC13AQ9UPW8 1703 aa14.82□□□□□ -0.04
HMGXB3-204ENST00000513318 PPP6R1Q9UPN7 881 aa14.79□□□□□ -0.04
HMGXB3-204ENST00000513318 ADRA2BP18089 450 aa14.76□□□□□ -0.05
HMGXB3-204ENST00000513318 SCRIBQ14160 1630 aa14.67□□□□□ -0.06
HMGXB3-204ENST00000513318 BICRAQ9NZM4 1560 aa14.56□□□□□ -0.08
HMGXB3-204ENST00000513318 SHROOM4Q9ULL8 1493 aa14.45□□□□□ -0.1
HMGXB3-204ENST00000513318 PIAS4Q8N2W9 510 aaPredicted RBP14.42□□□□□ -0.1
HMGXB3-204ENST00000513318 PABPN1Q86U42 306 aaKnown RBP eCLIP14.38□□□□□ -0.11
HMGXB3-204ENST00000513318 EIF4G1Q04637 1599 aaKnown RBP14.15□□□□□ -0.14
HMGXB3-204ENST00000513318 MSH5O43196 834 aa14.09□□□□□ -0.15
HMGXB3-204ENST00000513318 SMARCA4P51532 1647 aa14.08□□□□□ -0.15
HMGXB3-204ENST00000513318 BAZ1AQ9NRL2 1556 aaPredicted RBP14.08□□□□□ -0.16
HMGXB3-204ENST00000513318 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
HMGXB3-204ENST00000513318 CC2D2AQ9P2K1 1620 aa14.04□□□□□ -0.16
HMGXB3-204ENST00000513318 MROH2BQ7Z745 1585 aa13.96□□□□□ -0.17
HMGXB3-204ENST00000513318 PEG3Q9GZU2 1588 aa13.95□□□□□ -0.18
HMGXB3-204ENST00000513318 SMARCA2P51531 1590 aa13.92□□□□□ -0.18
HMGXB3-204ENST00000513318 WIZO95785 1651 aa13.88□□□□□ -0.19
HMGXB3-204ENST00000513318 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
HMGXB3-204ENST00000513318 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
HMGXB3-204ENST00000513318 HMGXB3Q12766 1538 aa13.86□□□□□ -0.19
HMGXB3-204ENST00000513318 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
HMGXB3-204ENST00000513318 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
HMGXB3-204ENST00000513318 BAZ1BQ9UIG0 1483 aaKnown RBP13.8□□□□□ -0.2
HMGXB3-204ENST00000513318 TOP2AP11388 1531 aaKnown RBP13.74□□□□□ -0.21
HMGXB3-204ENST00000513318 SUPT5HO00267 1087 aaKnown RBP13.59□□□□□ -0.23
HMGXB3-204ENST00000513318 PPP4R3CPQ6ZMV5 832 aa13.59□□□□□ -0.23
HMGXB3-204ENST00000513318 PRDM2Q13029 1718 aa13.56□□□□□ -0.24
HMGXB3-204ENST00000513318 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
HMGXB3-204ENST00000513318 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
HMGXB3-204ENST00000513318 NESP48681 1621 aa13.43□□□□□ -0.26
HMGXB3-204ENST00000513318 CADPSQ9ULU8 1353 aa13.42□□□□□ -0.26
HMGXB3-204ENST00000513318 CFTRP13569 1480 aa13.42□□□□□ -0.26
HMGXB3-204ENST00000513318 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
HMGXB3-204ENST00000513318 KIF21AQ7Z4S6 1674 aa13.41□□□□□ -0.26
HMGXB3-204ENST00000513318 MAPK8IP2Q13387 824 aaPredicted RBP13.41□□□□□ -0.26
HMGXB3-204ENST00000513318 PDS5BQ9NTI5 1447 aa13.33□□□□□ -0.28
HMGXB3-204ENST00000513318 ERCC6Q03468 1493 aa13.31□□□□□ -0.28
HMGXB3-204ENST00000513318 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
HMGXB3-204ENST00000513318 KCNA4P22459 653 aa13.29□□□□□ -0.28
HMGXB3-204ENST00000513318 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
HMGXB3-204ENST00000513318 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
HMGXB3-204ENST00000513318 MRC2Q9UBG0 1479 aa13.22□□□□□ -0.29
HMGXB3-204ENST00000513318 WDR62O43379 1518 aa13.19□□□□□ -0.3
HMGXB3-204ENST00000513318 CNKSR2Q8WXI2 1034 aa13.19□□□□□ -0.3
HMGXB3-204ENST00000513318 NCBP3Q53F19 620 aaKnown RBP13.18□□□□□ -0.3
HMGXB3-204ENST00000513318 DMRT2Q9Y5R5 561 aa13.18□□□□□ -0.3
HMGXB3-204ENST00000513318 DNMBPQ6XZF7 1577 aa13.16□□□□□ -0.3
HMGXB3-204ENST00000513318 URB2Q14146 1524 aaKnown RBP13.15□□□□□ -0.3
HMGXB3-204ENST00000513318 ABCC8Q09428 1581 aa13.15□□□□□ -0.3
HMGXB3-204ENST00000513318 BIVM-ERCC5R4GMW8 1640 aa13.13□□□□□ -0.31
HMGXB3-204ENST00000513318 TOPBP1Q92547 1522 aa13.13□□□□□ -0.31
HMGXB3-204ENST00000513318 CUX2O14529 1486 aa13.12□□□□□ -0.31
HMGXB3-204ENST00000513318 CUX1P39880 1505 aa13.1□□□□□ -0.31
HMGXB3-204ENST00000513318 TOP2BQ02880 1626 aa13.1□□□□□ -0.31
HMGXB3-204ENST00000513318 SYNJ1O43426 1573 aa13.08□□□□□ -0.32
HMGXB3-204ENST00000513318 WRNQ14191 1432 aaPredicted RBP eCLIP13.08□□□□□ -0.32
HMGXB3-204ENST00000513318 NPM3O75607 178 aaKnown RBP13.04□□□□□ -0.32
HMGXB3-204ENST00000513318 POTEDQ86YR6 584 aa13.02□□□□□ -0.33
HMGXB3-204ENST00000513318 POLA1P09884 1462 aaPredicted RBP13.02□□□□□ -0.33
HMGXB3-204ENST00000513318 FGD5Q6ZNL6 1462 aa13.02□□□□□ -0.33
HMGXB3-204ENST00000513318 WDR97A6NE52 1622 aa13.02□□□□□ -0.33
HMGXB3-204ENST00000513318 TARBP1Q13395 1621 aaKnown RBP13□□□□□ -0.33
HMGXB3-204ENST00000513318 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
HMGXB3-204ENST00000513318 RNF216Q9NWF9 866 aaPredicted RBP12.93□□□□□ -0.34
HMGXB3-204ENST00000513318 SOGA1O94964 1423 aa12.93□□□□□ -0.34
HMGXB3-204ENST00000513318 EIF4G3O43432 1585 aaKnown RBP12.93□□□□□ -0.34
HMGXB3-204ENST00000513318 RAD54L2Q9Y4B4 1467 aa12.92□□□□□ -0.34
HMGXB3-204ENST00000513318 HOXD11P31277 338 aaPredicted RBP12.91□□□□□ -0.34
HMGXB3-204ENST00000513318 PBRM1Q86U86 1689 aa12.91□□□□□ -0.34
HMGXB3-204ENST00000513318 ABCA10Q8WWZ4 1543 aa12.91□□□□□ -0.34
HMGXB3-204ENST00000513318 ABCA5Q8WWZ7 1642 aa12.9□□□□□ -0.34
HMGXB3-204ENST00000513318 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
HMGXB3-204ENST00000513318 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
HMGXB3-204ENST00000513318 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
HMGXB3-204ENST00000513318 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.365e-7■■■■■ 49.9
HMGXB3-204ENST00000513318 TDRD9Q8NDG6 1382 aaKnown RBP12.8□□□□□ -0.36
HMGXB3-204ENST00000513318 KIF27Q86VH2 1401 aa12.79□□□□□ -0.36
HMGXB3-204ENST00000513318 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
HMGXB3-204ENST00000513318 ERICH3Q5RHP9 1530 aa12.78□□□□□ -0.36
HMGXB3-204ENST00000513318 CHD1O14646 1710 aa12.78□□□□□ -0.36
HMGXB3-204ENST00000513318 CUL7Q14999 1698 aa12.77□□□□□ -0.36
HMGXB3-204ENST00000513318 MAGI1Q96QZ7 1491 aaPredicted RBP12.76□□□□□ -0.37
HMGXB3-204ENST00000513318 ADAMTS12P58397 1594 aa12.75□□□□□ -0.37
HMGXB3-204ENST00000513318 SNAPC4Q5SXM2 1469 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms