RNA–Protein interactions for RNA: ENST00000513148.1

HMGCL-209, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,011 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-209ENST00000513148 NISCHQ9Y2I1 1504 aa39.34■■■■□ 3.89
HMGCL-209ENST00000513148 CCDC180Q9P1Z9 1646 aa34.84■■■■□ 3.17
HMGCL-209ENST00000513148 ABCC9O60706 1549 aa33.87■■■■□ 3.01
HMGCL-209ENST00000513148 DCAF8L2P0C7V8 631 aa32.85■■■□□ 2.85
HMGCL-209ENST00000513148 ZCCHC6Q5VYS8 1495 aaKnown RBP32.84■■■□□ 2.85
HMGCL-209ENST00000513148 NACADO15069 1562 aa32.65■■■□□ 2.82
HMGCL-209ENST00000513148 RB1CC1Q8TDY2 1594 aa32.65■■■□□ 2.82
HMGCL-209ENST00000513148 MYO15BQ96JP2 1530 aa32.49■■■□□ 2.79
HMGCL-209ENST00000513148 DCAF1Q9Y4B6 1507 aa32.49■■■□□ 2.79
HMGCL-209ENST00000513148 UNC13AQ9UPW8 1703 aa31.99■■■□□ 2.71
HMGCL-209ENST00000513148 SCRIBQ14160 1630 aa31.92■■■□□ 2.7
HMGCL-209ENST00000513148 PABPN1Q86U42 306 aaKnown RBP eCLIP31.7■■■□□ 2.66
HMGCL-209ENST00000513148 BICRAQ9NZM4 1560 aa31.66■■■□□ 2.66
HMGCL-209ENST00000513148 SHROOM4Q9ULL8 1493 aa31.4■■■□□ 2.62
HMGCL-209ENST00000513148 EIF4G1Q04637 1599 aaKnown RBP30.81■■■□□ 2.52
HMGCL-209ENST00000513148 DNAJC5BQ9UF47 199 aa30.76■■■□□ 2.51
HMGCL-209ENST00000513148 CECR2Q9BXF3 1484 aa30.65■■■□□ 2.5
HMGCL-209ENST00000513148 CC2D2AQ9P2K1 1620 aa30.63■■■□□ 2.49
HMGCL-209ENST00000513148 SMARCA4P51532 1647 aa30.5■■■□□ 2.47
HMGCL-209ENST00000513148 BAZ1AQ9NRL2 1556 aaPredicted RBP30.48■■■□□ 2.47
HMGCL-209ENST00000513148 MROH2BQ7Z745 1585 aa30.36■■■□□ 2.45
HMGCL-209ENST00000513148 ATAD2BQ9ULI0 1458 aa30.21■■■□□ 2.43
HMGCL-209ENST00000513148 SMARCA2P51531 1590 aa30.19■■■□□ 2.42
HMGCL-209ENST00000513148 PEG3Q9GZU2 1588 aa30.12■■■□□ 2.41
HMGCL-209ENST00000513148 NCAPD3P42695 1498 aa30.1■■■□□ 2.41
HMGCL-209ENST00000513148 RSF1Q96T23 1441 aaPredicted RBP30.09■■■□□ 2.41
HMGCL-209ENST00000513148 WIZO95785 1651 aa30.09■■■□□ 2.41
HMGCL-209ENST00000513148 HMGXB3Q12766 1538 aa30.02■■■□□ 2.4
HMGCL-209ENST00000513148 BAZ1BQ9UIG0 1483 aaKnown RBP30.02■■■□□ 2.4
HMGCL-209ENST00000513148 TOP2AP11388 1531 aaKnown RBP29.73■■■□□ 2.35
HMGCL-209ENST00000513148 SUPT5HO00267 1087 aaKnown RBP29.66■■■□□ 2.34
HMGCL-209ENST00000513148 NESP48681 1621 aa29.4■■■□□ 2.3
HMGCL-209ENST00000513148 CCDC88BA6NC98 1476 aa29.38■■■□□ 2.29
HMGCL-209ENST00000513148 LAMC3Q9Y6N6 1575 aa29.31■■■□□ 2.28
HMGCL-209ENST00000513148 CADPSQ9ULU8 1353 aa29.27■■■□□ 2.28
HMGCL-209ENST00000513148 CFTRP13569 1480 aa29.16■■■□□ 2.26
HMGCL-209ENST00000513148 ERCC6Q03468 1493 aa29.16■■■□□ 2.26
HMGCL-209ENST00000513148 KIF21AQ7Z4S6 1674 aa29.09■■■□□ 2.25
HMGCL-209ENST00000513148 PDS5BQ9NTI5 1447 aa29.08■■■□□ 2.25
HMGCL-209ENST00000513148 PRDM2Q13029 1718 aa29.04■■■□□ 2.24
HMGCL-209ENST00000513148 FANCD2Q9BXW9 1451 aa28.98■■■□□ 2.23
HMGCL-209ENST00000513148 CEP164Q9UPV0 1460 aa28.92■■■□□ 2.22
HMGCL-209ENST00000513148 THOC2Q8NI27 1593 aaKnown RBP28.86■■■□□ 2.21
HMGCL-209ENST00000513148 MRC2Q9UBG0 1479 aa28.79■■■□□ 2.2
HMGCL-209ENST00000513148 WDR62O43379 1518 aa28.68■■■□□ 2.18
HMGCL-209ENST00000513148 URB2Q14146 1524 aaKnown RBP28.67■■■□□ 2.18
HMGCL-209ENST00000513148 CUX2O14529 1486 aa28.66■■■□□ 2.18
HMGCL-209ENST00000513148 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
HMGCL-209ENST00000513148 DNMBPQ6XZF7 1577 aa28.54■■■□□ 2.16
HMGCL-209ENST00000513148 ABCC8Q09428 1581 aa28.49■■■□□ 2.15
HMGCL-209ENST00000513148 CUX1P39880 1505 aa28.46■■■□□ 2.15
HMGCL-209ENST00000513148 WRNQ14191 1432 aaPredicted RBP eCLIP28.38■■■□□ 2.13
HMGCL-209ENST00000513148 SYNJ1O43426 1573 aa28.34■■■□□ 2.13
HMGCL-209ENST00000513148 POLA1P09884 1462 aaPredicted RBP28.33■■■□□ 2.13
HMGCL-209ENST00000513148 FGD5Q6ZNL6 1462 aa28.32■■■□□ 2.12
HMGCL-209ENST00000513148 BIVM-ERCC5R4GMW8 1640 aa28.29■■■□□ 2.12
HMGCL-209ENST00000513148 TOP2BQ02880 1626 aa28.29■■■□□ 2.12
HMGCL-209ENST00000513148 IFT140Q96RY7 1462 aa28.26■■■□□ 2.11
HMGCL-209ENST00000513148 RAD54L2Q9Y4B4 1467 aa28.23■■■□□ 2.11
HMGCL-209ENST00000513148 TARBP1Q13395 1621 aaKnown RBP28.21■■■□□ 2.11
HMGCL-209ENST00000513148 SOGA1O94964 1423 aa28.2■■■□□ 2.11
HMGCL-209ENST00000513148 ZNF608Q9ULD9 1512 aaPredicted RBP28.17■■■□□ 2.1
HMGCL-209ENST00000513148 EIF4G3O43432 1585 aaKnown RBP28.09■■■□□ 2.09
HMGCL-209ENST00000513148 WDR97A6NE52 1622 aa28.08■■■□□ 2.09
HMGCL-209ENST00000513148 AQRO60306 1485 aaKnown RBP eCLIP28.04■■■□□ 2.08
HMGCL-209ENST00000513148 TDRD9Q8NDG6 1382 aaKnown RBP28.04■■■□□ 2.08
HMGCL-209ENST00000513148 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
HMGCL-209ENST00000513148 TRIM41Q8WV44 630 aa27.94■■■□□ 2.06
HMGCL-209ENST00000513148 ABCA5Q8WWZ7 1642 aa27.92■■■□□ 2.06
HMGCL-209ENST00000513148 GAPVD1Q14C86 1478 aa27.89■■■□□ 2.06
HMGCL-209ENST00000513148 PBRM1Q86U86 1689 aa27.88■■■□□ 2.05
HMGCL-209ENST00000513148 GRIN2BQ13224 1484 aa27.83■■■□□ 2.05
HMGCL-209ENST00000513148 SNAPC4Q5SXM2 1469 aa27.8■■■□□ 2.04
HMGCL-209ENST00000513148 CHIC1Q5VXU3 224 aa27.79■■■□□ 2.04
HMGCL-209ENST00000513148 KIF27Q86VH2 1401 aa27.75■■■□□ 2.03
HMGCL-209ENST00000513148 MAGI1Q96QZ7 1491 aaPredicted RBP27.72■■■□□ 2.03
HMGCL-209ENST00000513148 CHD1O14646 1710 aa27.7■■■□□ 2.02
HMGCL-209ENST00000513148 ERICH3Q5RHP9 1530 aa27.69■■■□□ 2.02
HMGCL-209ENST00000513148 FBLN2P98095 1184 aa27.68■■■□□ 2.02
HMGCL-209ENST00000513148 RUSC2Q8N2Y8 1516 aa27.65■■■□□ 2.02
HMGCL-209ENST00000513148 ADAMTS12P58397 1594 aa27.64■■■□□ 2.02
HMGCL-209ENST00000513148 SYNJ2O15056 1496 aa27.62■■■□□ 2.01
HMGCL-209ENST00000513148 CHMP7Q8WUX9 453 aaPredicted RBP27.6■■■□□ 2.01
HMGCL-209ENST00000513148 IGF1RP08069 1367 aa27.57■■■□□ 2
HMGCL-209ENST00000513148 FHAD1B1AJZ9 1412 aa27.56■■■□□ 2
HMGCL-209ENST00000513148 CUL7Q14999 1698 aa27.53■■■□□ 2
HMGCL-209ENST00000513148 OSCARQ8IYS5 282 aa27.53■■■□□ 2
HMGCL-209ENST00000513148 GRIN2AQ12879 1464 aa27.49■■□□□ 1.99
HMGCL-209ENST00000513148 CARMIL1Q5VZK9 1371 aa27.44■■□□□ 1.98
HMGCL-209ENST00000513148 FAM9AQ8IZU1 332 aaPredicted RBP27.44■■□□□ 1.98
HMGCL-209ENST00000513148 DNAJC5Q9H3Z4 198 aa27.4■■□□□ 1.98
HMGCL-209ENST00000513148 EEA1Q15075 1411 aa27.38■■□□□ 1.97
HMGCL-209ENST00000513148 CEP170Q5SW79 1584 aa27.37■■□□□ 1.97
HMGCL-209ENST00000513148 CSRNP3Q8WYN3 585 aa27.33■■□□□ 1.97
HMGCL-209ENST00000513148 CLASP1Q7Z460 1538 aa27.33■■□□□ 1.96
HMGCL-209ENST00000513148 NUP160Q12769 1436 aa27.32■■□□□ 1.96
HMGCL-209ENST00000513148 RAPGEF2Q9Y4G8 1499 aa27.32■■□□□ 1.96
HMGCL-209ENST00000513148 PRXQ9BXM0 1461 aa27.28■■□□□ 1.96
HMGCL-209ENST00000513148 EHMT2Q96KQ7 1210 aa27.14■■□□□ 1.93
HMGCL-209ENST00000513148 ARHGEF11O15085 1522 aa27.14■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms