RNA–Protein interactions for RNA: ENST00000512526.1

SGCA-208, Transcript of sarcoglycan alpha, humanhuman

TSL 3

Gene SGCA, Length 577 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-208ENST00000512526 NISCHQ9Y2I1 1504 aa37.88■■■■□ 3.65
SGCA-208ENST00000512526 CCDC180Q9P1Z9 1646 aa33.41■■■□□ 2.94
SGCA-208ENST00000512526 ABCC9O60706 1549 aa32.62■■■□□ 2.81
SGCA-208ENST00000512526 DCAF8L2P0C7V8 631 aa31.63■■■□□ 2.65
SGCA-208ENST00000512526 ZCCHC6Q5VYS8 1495 aaKnown RBP31.58■■■□□ 2.65
SGCA-208ENST00000512526 NACADO15069 1562 aa31.47■■■□□ 2.63
SGCA-208ENST00000512526 RB1CC1Q8TDY2 1594 aa31.41■■■□□ 2.62
SGCA-208ENST00000512526 MYO15BQ96JP2 1530 aa31.4■■■□□ 2.62
SGCA-208ENST00000512526 DCAF1Q9Y4B6 1507 aa31.35■■■□□ 2.61
SGCA-208ENST00000512526 PABPN1Q86U42 306 aaKnown RBP eCLIP30.63■■■□□ 2.49
SGCA-208ENST00000512526 UNC13AQ9UPW8 1703 aa30.56■■■□□ 2.48
SGCA-208ENST00000512526 SCRIBQ14160 1630 aa30.55■■■□□ 2.48
SGCA-208ENST00000512526 BICRAQ9NZM4 1560 aa30.51■■■□□ 2.47
SGCA-208ENST00000512526 DNAJC5BQ9UF47 199 aa30.24■■■□□ 2.43
SGCA-208ENST00000512526 SHROOM4Q9ULL8 1493 aa30.19■■■□□ 2.42
SGCA-208ENST00000512526 EIF4G1Q04637 1599 aaKnown RBP29.66■■■□□ 2.34
SGCA-208ENST00000512526 CECR2Q9BXF3 1484 aa29.53■■■□□ 2.32
SGCA-208ENST00000512526 CC2D2AQ9P2K1 1620 aa29.46■■■□□ 2.31
SGCA-208ENST00000512526 BAZ1AQ9NRL2 1556 aaPredicted RBP29.29■■■□□ 2.28
SGCA-208ENST00000512526 SMARCA4P51532 1647 aa29.26■■■□□ 2.27
SGCA-208ENST00000512526 MROH2BQ7Z745 1585 aa29.2■■■□□ 2.26
SGCA-208ENST00000512526 ATAD2BQ9ULI0 1458 aa29.16■■■□□ 2.26
SGCA-208ENST00000512526 NCAPD3P42695 1498 aa29.14■■■□□ 2.26
SGCA-208ENST00000512526 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
SGCA-208ENST00000512526 PEG3Q9GZU2 1588 aa29.01■■■□□ 2.24
SGCA-208ENST00000512526 RSF1Q96T23 1441 aaPredicted RBP29.01■■■□□ 2.23
SGCA-208ENST00000512526 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
SGCA-208ENST00000512526 BAZ1BQ9UIG0 1483 aaKnown RBP28.86■■■□□ 2.21
SGCA-208ENST00000512526 WIZO95785 1651 aa28.81■■■□□ 2.2
SGCA-208ENST00000512526 TOP2AP11388 1531 aaKnown RBP28.54■■■□□ 2.16
SGCA-208ENST00000512526 SUPT5HO00267 1087 aaKnown RBP28.44■■■□□ 2.14
SGCA-208ENST00000512526 CADPSQ9ULU8 1353 aa28.31■■■□□ 2.12
SGCA-208ENST00000512526 NESP48681 1621 aa28.31■■■□□ 2.12
SGCA-208ENST00000512526 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
SGCA-208ENST00000512526 LAMC3Q9Y6N6 1575 aa28.2■■■□□ 2.11
SGCA-208ENST00000512526 CFTRP13569 1480 aa28.15■■■□□ 2.1
SGCA-208ENST00000512526 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
SGCA-208ENST00000512526 ERCC6Q03468 1493 aa28.07■■■□□ 2.08
SGCA-208ENST00000512526 DNAJC5Q9H3Z4 198 aa28.02■■■□□ 2.08
SGCA-208ENST00000512526 FANCD2Q9BXW9 1451 aa27.91■■■□□ 2.06
SGCA-208ENST00000512526 CEP164Q9UPV0 1460 aa27.83■■■□□ 2.04
SGCA-208ENST00000512526 KIF21AQ7Z4S6 1674 aa27.81■■■□□ 2.04
SGCA-208ENST00000512526 MRC2Q9UBG0 1479 aa27.76■■■□□ 2.03
SGCA-208ENST00000512526 THOC2Q8NI27 1593 aaKnown RBP27.73■■■□□ 2.03
SGCA-208ENST00000512526 CUX2O14529 1486 aa27.71■■■□□ 2.03
SGCA-208ENST00000512526 PRDM2Q13029 1718 aa27.66■■■□□ 2.02
SGCA-208ENST00000512526 WDR62O43379 1518 aa27.63■■■□□ 2.01
SGCA-208ENST00000512526 URB2Q14146 1524 aaKnown RBP27.62■■■□□ 2.01
SGCA-208ENST00000512526 ABCC8Q09428 1581 aa27.5■■□□□ 1.99
SGCA-208ENST00000512526 TOPBP1Q92547 1522 aa27.48■■□□□ 1.99
SGCA-208ENST00000512526 DNMBPQ6XZF7 1577 aa27.42■■□□□ 1.98
SGCA-208ENST00000512526 CUX1P39880 1505 aa27.36■■□□□ 1.97
SGCA-208ENST00000512526 WRNQ14191 1432 aaPredicted RBP eCLIP27.29■■□□□ 1.96
SGCA-208ENST00000512526 POLA1P09884 1462 aaPredicted RBP27.27■■□□□ 1.96
SGCA-208ENST00000512526 IFT140Q96RY7 1462 aa27.26■■□□□ 1.95
SGCA-208ENST00000512526 FGD5Q6ZNL6 1462 aa27.22■■□□□ 1.95
SGCA-208ENST00000512526 SOGA1O94964 1423 aa27.22■■□□□ 1.95
SGCA-208ENST00000512526 RAD54L2Q9Y4B4 1467 aa27.18■■□□□ 1.94
SGCA-208ENST00000512526 SYNJ1O43426 1573 aa27.14■■□□□ 1.94
SGCA-208ENST00000512526 TOP2BQ02880 1626 aa27.14■■□□□ 1.94
SGCA-208ENST00000512526 ZNF608Q9ULD9 1512 aaPredicted RBP27.14■■□□□ 1.94
SGCA-208ENST00000512526 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
SGCA-208ENST00000512526 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
SGCA-208ENST00000512526 TDRD9Q8NDG6 1382 aaKnown RBP27.05■■□□□ 1.92
SGCA-208ENST00000512526 AQRO60306 1485 aaKnown RBP eCLIP27.05■■□□□ 1.92
SGCA-208ENST00000512526 ABCA10Q8WWZ4 1543 aa26.99■■□□□ 1.91
SGCA-208ENST00000512526 EIF4G3O43432 1585 aaKnown RBP26.92■■□□□ 1.9
SGCA-208ENST00000512526 WDR97A6NE52 1622 aa26.88■■□□□ 1.89
SGCA-208ENST00000512526 GAPVD1Q14C86 1478 aa26.87■■□□□ 1.89
SGCA-208ENST00000512526 TRIM41Q8WV44 630 aa26.86■■□□□ 1.89
SGCA-208ENST00000512526 GRIN2BQ13224 1484 aa26.83■■□□□ 1.89
SGCA-208ENST00000512526 ABCA5Q8WWZ7 1642 aa26.78■■□□□ 1.88
SGCA-208ENST00000512526 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
SGCA-208ENST00000512526 CHIC1Q5VXU3 224 aa26.73■■□□□ 1.87
SGCA-208ENST00000512526 OSCARQ8IYS5 282 aa26.72■■□□□ 1.87
SGCA-208ENST00000512526 MAGI1Q96QZ7 1491 aaPredicted RBP26.71■■□□□ 1.87
SGCA-208ENST00000512526 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
SGCA-208ENST00000512526 FBLN2P98095 1184 aa26.67■■□□□ 1.86
SGCA-208ENST00000512526 IGF1RP08069 1367 aa26.67■■□□□ 1.86
SGCA-208ENST00000512526 CHMP7Q8WUX9 453 aaPredicted RBP26.66■■□□□ 1.86
SGCA-208ENST00000512526 ERICH3Q5RHP9 1530 aa26.65■■□□□ 1.86
SGCA-208ENST00000512526 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
SGCA-208ENST00000512526 PBRM1Q86U86 1689 aa26.6■■□□□ 1.85
SGCA-208ENST00000512526 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.85
SGCA-208ENST00000512526 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
SGCA-208ENST00000512526 ADAMTS12P58397 1594 aa26.5■■□□□ 1.83
SGCA-208ENST00000512526 CARMIL1Q5VZK9 1371 aa26.47■■□□□ 1.83
SGCA-208ENST00000512526 CHD1O14646 1710 aa26.47■■□□□ 1.83
SGCA-208ENST00000512526 GRIN2AQ12879 1464 aa26.47■■□□□ 1.83
SGCA-208ENST00000512526 NUP160Q12769 1436 aa26.39■■□□□ 1.81
SGCA-208ENST00000512526 CSRNP3Q8WYN3 585 aa26.37■■□□□ 1.81
SGCA-208ENST00000512526 CUL7Q14999 1698 aa26.35■■□□□ 1.81
SGCA-208ENST00000512526 EEA1Q15075 1411 aa26.34■■□□□ 1.81
SGCA-208ENST00000512526 CLASP1Q7Z460 1538 aa26.32■■□□□ 1.8
SGCA-208ENST00000512526 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
SGCA-208ENST00000512526 FAM9AQ8IZU1 332 aaPredicted RBP26.29■■□□□ 1.8
SGCA-208ENST00000512526 PRXQ9BXM0 1461 aa26.29■■□□□ 1.8
SGCA-208ENST00000512526 RAPGEF2Q9Y4G8 1499 aa26.29■■□□□ 1.8
SGCA-208ENST00000512526 JPH4Q96JJ6 628 aa26.2■■□□□ 1.78
SGCA-208ENST00000512526 KIAA0586Q9BVV6 1533 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms