RNA–Protein interactions for RNA: ENST00000509384.5

LYSMD3-204, Transcript of LysM domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LYSMD3, Length 1,538 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-204ENST00000509384 NISCHQ9Y2I1 1504 aa28.8■■■□□ 2.2
LYSMD3-204ENST00000509384 CCDC180Q9P1Z9 1646 aa25.15■■□□□ 1.62
LYSMD3-204ENST00000509384 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
LYSMD3-204ENST00000509384 ABCC9O60706 1549 aa23.92■■□□□ 1.42
LYSMD3-204ENST00000509384 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
LYSMD3-204ENST00000509384 DCAF8L2P0C7V8 631 aa23.83■■□□□ 1.41
LYSMD3-204ENST00000509384 MYO15BQ96JP2 1530 aa23.59■■□□□ 1.37
LYSMD3-204ENST00000509384 NACADO15069 1562 aa23.48■■□□□ 1.35
LYSMD3-204ENST00000509384 SHROOM4Q9ULL8 1493 aa23.42■■□□□ 1.34
LYSMD3-204ENST00000509384 RB1CC1Q8TDY2 1594 aa23.32■■□□□ 1.32
LYSMD3-204ENST00000509384 SCRIBQ14160 1630 aa23.13■■□□□ 1.29
LYSMD3-204ENST00000509384 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
LYSMD3-204ENST00000509384 BICRAQ9NZM4 1560 aa22.57■■□□□ 1.2
LYSMD3-204ENST00000509384 PABPN1Q86U42 306 aaKnown RBP eCLIP22.53■■□□□ 1.2
LYSMD3-204ENST00000509384 SUPT5HO00267 1087 aaKnown RBP22.47■■□□□ 1.19
LYSMD3-204ENST00000509384 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
LYSMD3-204ENST00000509384 RSF1Q96T23 1441 aaPredicted RBP22.3■■□□□ 1.16
LYSMD3-204ENST00000509384 BAZ1AQ9NRL2 1556 aaPredicted RBP22.27■■□□□ 1.16
LYSMD3-204ENST00000509384 MROH2BQ7Z745 1585 aa22.24■■□□□ 1.15
LYSMD3-204ENST00000509384 SMARCA4P51532 1647 aa22.15■■□□□ 1.14
LYSMD3-204ENST00000509384 AEBP2Q6ZN18 517 aaPredicted RBP22.11■■□□□ 1.13
LYSMD3-204ENST00000509384 WIZO95785 1651 aa22.02■■□□□ 1.12
LYSMD3-204ENST00000509384 EIF4G1Q04637 1599 aaKnown RBP21.93■■□□□ 1.1
LYSMD3-204ENST00000509384 DNAJC5BQ9UF47 199 aa21.9■■□□□ 1.1
LYSMD3-204ENST00000509384 PEG3Q9GZU2 1588 aa21.9■■□□□ 1.1
LYSMD3-204ENST00000509384 ATAD2BQ9ULI0 1458 aa21.85■■□□□ 1.09
LYSMD3-204ENST00000509384 TOP2AP11388 1531 aaKnown RBP21.84■■□□□ 1.09
LYSMD3-204ENST00000509384 SMARCA2P51531 1590 aa21.83■■□□□ 1.09
LYSMD3-204ENST00000509384 BAZ1BQ9UIG0 1483 aaKnown RBP21.72■■□□□ 1.07
LYSMD3-204ENST00000509384 NCAPD3P42695 1498 aa21.67■■□□□ 1.06
LYSMD3-204ENST00000509384 HMGXB3Q12766 1538 aa21.64■■□□□ 1.05
LYSMD3-204ENST00000509384 CC2D2AQ9P2K1 1620 aa21.61■■□□□ 1.05
LYSMD3-204ENST00000509384 CCDC88BA6NC98 1476 aa21.59■■□□□ 1.05
LYSMD3-204ENST00000509384 CHIC1Q5VXU3 224 aa21.43■■□□□ 1.02
LYSMD3-204ENST00000509384 CFTRP13569 1480 aa21.16■□□□□ 0.98
LYSMD3-204ENST00000509384 TRIM41Q8WV44 630 aa21.14■□□□□ 0.98
LYSMD3-204ENST00000509384 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
LYSMD3-204ENST00000509384 ABCC8Q09428 1581 aa21.09■□□□□ 0.97
LYSMD3-204ENST00000509384 WRNQ14191 1432 aaPredicted RBP eCLIP21.01■□□□□ 0.95
LYSMD3-204ENST00000509384 PRDM2Q13029 1718 aa20.97■□□□□ 0.95
LYSMD3-204ENST00000509384 LAMC3Q9Y6N6 1575 aa20.95■□□□□ 0.94
LYSMD3-204ENST00000509384 NESP48681 1621 aa20.95■□□□□ 0.94
LYSMD3-204ENST00000509384 SYNJ1O43426 1573 aa20.9■□□□□ 0.94
LYSMD3-204ENST00000509384 FANCD2Q9BXW9 1451 aa20.89■□□□□ 0.94
LYSMD3-204ENST00000509384 TOP2BQ02880 1626 aa20.83■□□□□ 0.92
LYSMD3-204ENST00000509384 PDS5BQ9NTI5 1447 aa20.83■□□□□ 0.92
LYSMD3-204ENST00000509384 CUX1P39880 1505 aa20.81■□□□□ 0.92
LYSMD3-204ENST00000509384 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
LYSMD3-204ENST00000509384 CEP164Q9UPV0 1460 aa20.78■□□□□ 0.92
LYSMD3-204ENST00000509384 FAM9AQ8IZU1 332 aaPredicted RBP20.74■□□□□ 0.91
LYSMD3-204ENST00000509384 SOGA1O94964 1423 aa20.68■□□□□ 0.9
LYSMD3-204ENST00000509384 DNMBPQ6XZF7 1577 aa20.67■□□□□ 0.9
LYSMD3-204ENST00000509384 EEA1Q15075 1411 aa20.67■□□□□ 0.9
LYSMD3-204ENST00000509384 KIF21AQ7Z4S6 1674 aa20.65■□□□□ 0.9
LYSMD3-204ENST00000509384 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
LYSMD3-204ENST00000509384 DNAJC5Q9H3Z4 198 aa20.63■□□□□ 0.89
LYSMD3-204ENST00000509384 URB2Q14146 1524 aaKnown RBP20.62■□□□□ 0.89
LYSMD3-204ENST00000509384 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
LYSMD3-204ENST00000509384 RUSC2Q8N2Y8 1516 aa20.59■□□□□ 0.89
LYSMD3-204ENST00000509384 LOC105371045A0A1W2PR82 267 aa20.58■□□□□ 0.89
LYSMD3-204ENST00000509384 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
LYSMD3-204ENST00000509384 ERCC6Q03468 1493 aa20.55■□□□□ 0.88
LYSMD3-204ENST00000509384 CSRNP3Q8WYN3 585 aa20.53■□□□□ 0.88
LYSMD3-204ENST00000509384 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
LYSMD3-204ENST00000509384 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
LYSMD3-204ENST00000509384 CUX2O14529 1486 aa20.47■□□□□ 0.87
LYSMD3-204ENST00000509384 RAD54L2Q9Y4B4 1467 aa20.45■□□□□ 0.86
LYSMD3-204ENST00000509384 EHMT2Q96KQ7 1210 aa20.45■□□□□ 0.86
LYSMD3-204ENST00000509384 WDR62O43379 1518 aa20.44■□□□□ 0.86
LYSMD3-204ENST00000509384 ABCA10Q8WWZ4 1543 aa20.43■□□□□ 0.86
LYSMD3-204ENST00000509384 THOC2Q8NI27 1593 aaKnown RBP20.39■□□□□ 0.85
LYSMD3-204ENST00000509384 KIF21BO75037 1637 aa20.37■□□□□ 0.85
LYSMD3-204ENST00000509384 GOLGA3Q08378 1498 aa20.37■□□□□ 0.85
LYSMD3-204ENST00000509384 WDR97A6NE52 1622 aa20.33■□□□□ 0.84
LYSMD3-204ENST00000509384 PRXQ9BXM0 1461 aa20.32■□□□□ 0.84
LYSMD3-204ENST00000509384 TARBP1Q13395 1621 aaKnown RBP20.31■□□□□ 0.84
LYSMD3-204ENST00000509384 IGF1RP08069 1367 aa20.3■□□□□ 0.84
LYSMD3-204ENST00000509384 IFT140Q96RY7 1462 aa20.29■□□□□ 0.84
LYSMD3-204ENST00000509384 RAPGEF2Q9Y4G8 1499 aa20.28■□□□□ 0.84
LYSMD3-204ENST00000509384 TDRD9Q8NDG6 1382 aaKnown RBP20.27■□□□□ 0.84
LYSMD3-204ENST00000509384 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.84
LYSMD3-204ENST00000509384 UBTFP17480 764 aaKnown RBP20.27■□□□□ 0.83
LYSMD3-204ENST00000509384 TNIKQ9UKE5 1360 aa20.27■□□□□ 0.83
LYSMD3-204ENST00000509384 ABCA5Q8WWZ7 1642 aa20.26■□□□□ 0.83
LYSMD3-204ENST00000509384 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
LYSMD3-204ENST00000509384 CARMIL1Q5VZK9 1371 aa20.22■□□□□ 0.83
LYSMD3-204ENST00000509384 CUL7Q14999 1698 aa20.16■□□□□ 0.82
LYSMD3-204ENST00000509384 CEP162Q5TB80 1403 aa20.16■□□□□ 0.82
LYSMD3-204ENST00000509384 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.822e-7■■■□□ 15.3
LYSMD3-204ENST00000509384 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
LYSMD3-204ENST00000509384 GRIN2BQ13224 1484 aa20.11■□□□□ 0.81
LYSMD3-204ENST00000509384 EIF4G3O43432 1585 aaKnown RBP20.09■□□□□ 0.81
LYSMD3-204ENST00000509384 PBRM1Q86U86 1689 aa20.09■□□□□ 0.81
LYSMD3-204ENST00000509384 FHAD1B1AJZ9 1412 aa20.03■□□□□ 0.8
LYSMD3-204ENST00000509384 CLIP1P30622 1438 aa20.03■□□□□ 0.8
LYSMD3-204ENST00000509384 ADAMTS12P58397 1594 aa20.02■□□□□ 0.8
LYSMD3-204ENST00000509384 SNAPC4Q5SXM2 1469 aa20■□□□□ 0.79
LYSMD3-204ENST00000509384 RANGAP1P46060 587 aaPredicted RBP19.97■□□□□ 0.79
LYSMD3-204ENST00000509384 MAGI1Q96QZ7 1491 aaPredicted RBP19.95■□□□□ 0.78
LYSMD3-204ENST00000509384 CTTNBP2Q8WZ74 1663 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms