RNA–Protein interactions for RNA: ENST00000509093.5

COPS4-206, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 2 BASIC

Gene COPS4, Length 2,273 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-206ENST00000509093 NISCHQ9Y2I1 1504 aa24.55■■□□□ 1.52
COPS4-206ENST00000509093 CCDC180Q9P1Z9 1646 aa21.29■■□□□ 1
COPS4-206ENST00000509093 ZCCHC6Q5VYS8 1495 aaKnown RBP20.62■□□□□ 0.89
COPS4-206ENST00000509093 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
COPS4-206ENST00000509093 ABCC9O60706 1549 aa20.31■□□□□ 0.84
COPS4-206ENST00000509093 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
COPS4-206ENST00000509093 DCAF1Q9Y4B6 1507 aa20.21■□□□□ 0.83
COPS4-206ENST00000509093 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
COPS4-206ENST00000509093 NACADO15069 1562 aa19.86■□□□□ 0.77
COPS4-206ENST00000509093 SCRIBQ14160 1630 aa19.73■□□□□ 0.75
COPS4-206ENST00000509093 RB1CC1Q8TDY2 1594 aa19.69■□□□□ 0.74
COPS4-206ENST00000509093 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
COPS4-206ENST00000509093 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
COPS4-206ENST00000509093 PABPN1Q86U42 306 aaKnown RBP eCLIP19.22■□□□□ 0.67
COPS4-206ENST00000509093 BICRAQ9NZM4 1560 aa19.19■□□□□ 0.66
COPS4-206ENST00000509093 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
COPS4-206ENST00000509093 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
COPS4-206ENST00000509093 MROH2BQ7Z745 1585 aa19.03■□□□□ 0.64
COPS4-206ENST00000509093 BAZ1AQ9NRL2 1556 aaPredicted RBP18.91■□□□□ 0.62
COPS4-206ENST00000509093 WIZO95785 1651 aa18.86■□□□□ 0.61
COPS4-206ENST00000509093 SMARCA4P51532 1647 aa18.86■□□□□ 0.61
COPS4-206ENST00000509093 HRCP23327 699 aa18.64■□□□□ 0.57
COPS4-206ENST00000509093 TOP2AP11388 1531 aaKnown RBP18.6■□□□□ 0.57
COPS4-206ENST00000509093 EIF4G1Q04637 1599 aaKnown RBP18.58■□□□□ 0.56
COPS4-206ENST00000509093 PEG3Q9GZU2 1588 aa18.58■□□□□ 0.56
COPS4-206ENST00000509093 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
COPS4-206ENST00000509093 CHIC1Q5VXU3 224 aa18.57■□□□□ 0.56
COPS4-206ENST00000509093 SMARCA2P51531 1590 aa18.49■□□□□ 0.55
COPS4-206ENST00000509093 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
COPS4-206ENST00000509093 BAZ1BQ9UIG0 1483 aaKnown RBP18.45■□□□□ 0.54
COPS4-206ENST00000509093 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
COPS4-206ENST00000509093 CC2D2AQ9P2K1 1620 aa18.31■□□□□ 0.52
COPS4-206ENST00000509093 HMGXB3Q12766 1538 aa18.31■□□□□ 0.52
COPS4-206ENST00000509093 TRIM41Q8WV44 630 aa18.2■□□□□ 0.5
COPS4-206ENST00000509093 PELP1Q8IZL8 1130 aaKnown RBP18.14■□□□□ 0.49
COPS4-206ENST00000509093 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
COPS4-206ENST00000509093 PCGF6Q9BYE7 350 aa18.11■□□□□ 0.49
COPS4-206ENST00000509093 PPARGC1BQ86YN6 1023 aaKnown RBP18.08■□□□□ 0.48
COPS4-206ENST00000509093 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
COPS4-206ENST00000509093 CFTRP13569 1480 aa17.99■□□□□ 0.47
COPS4-206ENST00000509093 FAM9AQ8IZU1 332 aaPredicted RBP17.97■□□□□ 0.47
COPS4-206ENST00000509093 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
COPS4-206ENST00000509093 LOC105371045A0A1W2PR82 267 aa17.95■□□□□ 0.46
COPS4-206ENST00000509093 CADPSQ9ULU8 1353 aa17.93■□□□□ 0.46
COPS4-206ENST00000509093 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
COPS4-206ENST00000509093 NESP48681 1621 aa17.86■□□□□ 0.45
COPS4-206ENST00000509093 SOGA1O94964 1423 aa17.81■□□□□ 0.44
COPS4-206ENST00000509093 PRDM2Q13029 1718 aa17.8■□□□□ 0.44
COPS4-206ENST00000509093 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
COPS4-206ENST00000509093 CUX1P39880 1505 aa17.77■□□□□ 0.44
COPS4-206ENST00000509093 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.43
COPS4-206ENST00000509093 TOP2BQ02880 1626 aa17.77■□□□□ 0.43
COPS4-206ENST00000509093 FANCD2Q9BXW9 1451 aa17.74■□□□□ 0.43
COPS4-206ENST00000509093 BIVM-ERCC5R4GMW8 1640 aa17.73■□□□□ 0.43
COPS4-206ENST00000509093 LAMC3Q9Y6N6 1575 aa17.7■□□□□ 0.42
COPS4-206ENST00000509093 TRIM26Q12899 539 aaPredicted RBP17.64■□□□□ 0.41
COPS4-206ENST00000509093 CSRNP3Q8WYN3 585 aa17.63■□□□□ 0.41
COPS4-206ENST00000509093 EEA1Q15075 1411 aa17.61■□□□□ 0.41
COPS4-206ENST00000509093 PDS5BQ9NTI5 1447 aa17.6■□□□□ 0.41
COPS4-206ENST00000509093 CEP164Q9UPV0 1460 aa17.6■□□□□ 0.41
COPS4-206ENST00000509093 ZEB1P37275 1124 aaPredicted RBP17.59■□□□□ 0.41
COPS4-206ENST00000509093 SCAF1Q9H7N4 1312 aaKnown RBP17.58■□□□□ 0.4
COPS4-206ENST00000509093 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
COPS4-206ENST00000509093 KIF21AQ7Z4S6 1674 aa17.55■□□□□ 0.4
COPS4-206ENST00000509093 TOPBP1Q92547 1522 aa17.55■□□□□ 0.4
COPS4-206ENST00000509093 URB2Q14146 1524 aaKnown RBP17.55■□□□□ 0.4
COPS4-206ENST00000509093 DNMBPQ6XZF7 1577 aa17.54■□□□□ 0.4
COPS4-206ENST00000509093 MYT1Q01538 1121 aa17.49■□□□□ 0.39
COPS4-206ENST00000509093 RAD54L2Q9Y4B4 1467 aa17.48■□□□□ 0.39
COPS4-206ENST00000509093 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
COPS4-206ENST00000509093 KIF27Q86VH2 1401 aa17.47■□□□□ 0.39
COPS4-206ENST00000509093 CUX2O14529 1486 aa17.46■□□□□ 0.39
COPS4-206ENST00000509093 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
COPS4-206ENST00000509093 GOLGA3Q08378 1498 aa17.43■□□□□ 0.38
COPS4-206ENST00000509093 KIF21BO75037 1637 aa17.42■□□□□ 0.38
COPS4-206ENST00000509093 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
COPS4-206ENST00000509093 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
COPS4-206ENST00000509093 MRC2Q9UBG0 1479 aa17.39■□□□□ 0.37
COPS4-206ENST00000509093 PRXQ9BXM0 1461 aa17.38■□□□□ 0.37
COPS4-206ENST00000509093 IGF1RP08069 1367 aa17.37■□□□□ 0.37
COPS4-206ENST00000509093 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
COPS4-206ENST00000509093 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
COPS4-206ENST00000509093 CEP162Q5TB80 1403 aa17.34■□□□□ 0.37
COPS4-206ENST00000509093 TDRD9Q8NDG6 1382 aaKnown RBP17.31■□□□□ 0.36
COPS4-206ENST00000509093 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
COPS4-206ENST00000509093 WDR62O43379 1518 aa17.29■□□□□ 0.36
COPS4-206ENST00000509093 ERICH3Q5RHP9 1530 aa17.29■□□□□ 0.36
COPS4-206ENST00000509093 TARBP1Q13395 1621 aaKnown RBP17.27■□□□□ 0.36
COPS4-206ENST00000509093 CARMIL1Q5VZK9 1371 aa17.27■□□□□ 0.36
COPS4-206ENST00000509093 RANGAP1P46060 587 aaPredicted RBP17.26■□□□□ 0.35
COPS4-206ENST00000509093 THOC2Q8NI27 1593 aaKnown RBP17.24■□□□□ 0.35
COPS4-206ENST00000509093 ABCA5Q8WWZ7 1642 aa17.22■□□□□ 0.35
COPS4-206ENST00000509093 GAPVD1Q14C86 1478 aa17.21■□□□□ 0.35
COPS4-206ENST00000509093 ACIN1Q9UKV3 1341 aaKnown RBP17.2■□□□□ 0.34
COPS4-206ENST00000509093 CLIP1P30622 1438 aa17.19■□□□□ 0.34
COPS4-206ENST00000509093 AQRO60306 1485 aaKnown RBP eCLIP17.19■□□□□ 0.34
COPS4-206ENST00000509093 ZNF608Q9ULD9 1512 aaPredicted RBP17.17■□□□□ 0.34
COPS4-206ENST00000509093 IFT140Q96RY7 1462 aa17.16■□□□□ 0.34
COPS4-206ENST00000509093 CUL7Q14999 1698 aa17.12■□□□□ 0.33
COPS4-206ENST00000509093 PBRM1Q86U86 1689 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms