RNA–Protein interactions for RNA: ENST00000506858.2

SCAMP1-202, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,603 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-202ENST00000506858 AEBP2Q6ZN18 517 aaPredicted RBP21.44■■□□□ 1.02
SCAMP1-202ENST00000506858 NISCHQ9Y2I1 1504 aa20.9■□□□□ 0.94
SCAMP1-202ENST00000506858 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
SCAMP1-202ENST00000506858 POTEDQ86YR6 584 aa18.6■□□□□ 0.57
SCAMP1-202ENST00000506858 SENP3Q9H4L4 574 aaPredicted RBP18.57■□□□□ 0.56
SCAMP1-202ENST00000506858 CCDC180Q9P1Z9 1646 aa18.33■□□□□ 0.52
SCAMP1-202ENST00000506858 PHF23Q9BUL5 403 aaPredicted RBP18.23■□□□□ 0.51
SCAMP1-202ENST00000506858 ABCC9O60706 1549 aa17.96■□□□□ 0.47
SCAMP1-202ENST00000506858 DCAF8L2P0C7V8 631 aa17.61■□□□□ 0.41
SCAMP1-202ENST00000506858 ZCCHC6Q5VYS8 1495 aaKnown RBP17.44■□□□□ 0.38
SCAMP1-202ENST00000506858 NACADO15069 1562 aa17.23■□□□□ 0.35
SCAMP1-202ENST00000506858 RB1CC1Q8TDY2 1594 aa17.21■□□□□ 0.35
SCAMP1-202ENST00000506858 DCAF1Q9Y4B6 1507 aa17.18■□□□□ 0.34
SCAMP1-202ENST00000506858 MYO15BQ96JP2 1530 aa17.13■□□□□ 0.33
SCAMP1-202ENST00000506858 FOXD1Q16676 465 aa17.07■□□□□ 0.32
SCAMP1-202ENST00000506858 SCRIBQ14160 1630 aa16.94■□□□□ 0.3
SCAMP1-202ENST00000506858 PABPN1Q86U42 306 aaKnown RBP eCLIP16.92■□□□□ 0.3
SCAMP1-202ENST00000506858 SHROOM4Q9ULL8 1493 aa16.89■□□□□ 0.3
SCAMP1-202ENST00000506858 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
SCAMP1-202ENST00000506858 UNC13AQ9UPW8 1703 aa16.85■□□□□ 0.29
SCAMP1-202ENST00000506858 BICRAQ9NZM4 1560 aa16.76■□□□□ 0.27
SCAMP1-202ENST00000506858 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
SCAMP1-202ENST00000506858 CECR2Q9BXF3 1484 aa16.37■□□□□ 0.21
SCAMP1-202ENST00000506858 EIF4G1Q04637 1599 aaKnown RBP16.27■□□□□ 0.19
SCAMP1-202ENST00000506858 MSH5O43196 834 aa16.19■□□□□ 0.18
SCAMP1-202ENST00000506858 MROH2BQ7Z745 1585 aa16.18■□□□□ 0.18
SCAMP1-202ENST00000506858 CC2D2AQ9P2K1 1620 aa16.17■□□□□ 0.18
SCAMP1-202ENST00000506858 SMARCA4P51532 1647 aa16.14■□□□□ 0.17
SCAMP1-202ENST00000506858 PIAS4Q8N2W9 510 aaPredicted RBP16.14■□□□□ 0.17
SCAMP1-202ENST00000506858 BAZ1AQ9NRL2 1556 aaPredicted RBP16.13■□□□□ 0.17
SCAMP1-202ENST00000506858 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.16
SCAMP1-202ENST00000506858 ADRA2BP18089 450 aa16.07■□□□□ 0.16
SCAMP1-202ENST00000506858 ATAD2BQ9ULI0 1458 aa16.04■□□□□ 0.16
SCAMP1-202ENST00000506858 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
SCAMP1-202ENST00000506858 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
SCAMP1-202ENST00000506858 WIZO95785 1651 aa16.01■□□□□ 0.15
SCAMP1-202ENST00000506858 NCAPD3P42695 1498 aa15.95■□□□□ 0.14
SCAMP1-202ENST00000506858 SMARCA2P51531 1590 aa15.94■□□□□ 0.14
SCAMP1-202ENST00000506858 PEG3Q9GZU2 1588 aa15.9■□□□□ 0.14
SCAMP1-202ENST00000506858 BAZ1BQ9UIG0 1483 aaKnown RBP15.9■□□□□ 0.14
SCAMP1-202ENST00000506858 HMGXB3Q12766 1538 aa15.83■□□□□ 0.12
SCAMP1-202ENST00000506858 TOP2AP11388 1531 aaKnown RBP15.77■□□□□ 0.12
SCAMP1-202ENST00000506858 CCDC88BA6NC98 1476 aa15.67■□□□□ 0.1
SCAMP1-202ENST00000506858 NESP48681 1621 aa15.62■□□□□ 0.09
SCAMP1-202ENST00000506858 CADPSQ9ULU8 1353 aa15.54■□□□□ 0.08
SCAMP1-202ENST00000506858 CFTRP13569 1480 aa15.47■□□□□ 0.07
SCAMP1-202ENST00000506858 LAMC3Q9Y6N6 1575 aa15.43■□□□□ 0.06
SCAMP1-202ENST00000506858 ERCC6Q03468 1493 aa15.4■□□□□ 0.06
SCAMP1-202ENST00000506858 PDS5BQ9NTI5 1447 aa15.38■□□□□ 0.05
SCAMP1-202ENST00000506858 FANCD2Q9BXW9 1451 aa15.37■□□□□ 0.05
SCAMP1-202ENST00000506858 KIF21AQ7Z4S6 1674 aa15.34■□□□□ 0.05
SCAMP1-202ENST00000506858 CEP164Q9UPV0 1460 aa15.29■□□□□ 0.04
SCAMP1-202ENST00000506858 PRDM2Q13029 1718 aa15.24■□□□□ 0.03
SCAMP1-202ENST00000506858 URB2Q14146 1524 aaKnown RBP15.22■□□□□ 0.03
SCAMP1-202ENST00000506858 MRC2Q9UBG0 1479 aa15.21■□□□□ 0.03
SCAMP1-202ENST00000506858 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
SCAMP1-202ENST00000506858 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
SCAMP1-202ENST00000506858 CUX1P39880 1505 aa15.15■□□□□ 0.02
SCAMP1-202ENST00000506858 TOPBP1Q92547 1522 aa15.14■□□□□ 0.01
SCAMP1-202ENST00000506858 WDR62O43379 1518 aa15.13■□□□□ 0.01
SCAMP1-202ENST00000506858 WRNQ14191 1432 aaPredicted RBP eCLIP15.12■□□□□ 0.01
SCAMP1-202ENST00000506858 DNMBPQ6XZF7 1577 aa15.09■□□□□ 0.01
SCAMP1-202ENST00000506858 SYNJ1O43426 1573 aa15.08■□□□□ 0
SCAMP1-202ENST00000506858 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
SCAMP1-202ENST00000506858 CUX2O14529 1486 aa15.05■□□□□ -0
SCAMP1-202ENST00000506858 FGD5Q6ZNL6 1462 aa15.05■□□□□ -0
SCAMP1-202ENST00000506858 RAD54L2Q9Y4B4 1467 aa15.05■□□□□ -0
SCAMP1-202ENST00000506858 POLA1P09884 1462 aaPredicted RBP15.04■□□□□ -0
SCAMP1-202ENST00000506858 TRIM41Q8WV44 630 aa15.03■□□□□ -0
SCAMP1-202ENST00000506858 SOGA1O94964 1423 aa15.01□□□□□ -0.01
SCAMP1-202ENST00000506858 TOP2BQ02880 1626 aa15□□□□□ -0.01
SCAMP1-202ENST00000506858 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
SCAMP1-202ENST00000506858 ZNF608Q9ULD9 1512 aaPredicted RBP14.97□□□□□ -0.01
SCAMP1-202ENST00000506858 TDRD9Q8NDG6 1382 aaKnown RBP14.97□□□□□ -0.01
SCAMP1-202ENST00000506858 IFT140Q96RY7 1462 aa14.94□□□□□ -0.02
SCAMP1-202ENST00000506858 AQRO60306 1485 aaKnown RBP eCLIP14.93□□□□□ -0.02
SCAMP1-202ENST00000506858 TARBP1Q13395 1621 aaKnown RBP14.93□□□□□ -0.02
SCAMP1-202ENST00000506858 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
SCAMP1-202ENST00000506858 RUSC2Q8N2Y8 1516 aa14.86□□□□□ -0.03
SCAMP1-202ENST00000506858 ABCA10Q8WWZ4 1543 aa14.86□□□□□ -0.03
SCAMP1-202ENST00000506858 FAM9AQ8IZU1 332 aaPredicted RBP14.84□□□□□ -0.03
SCAMP1-202ENST00000506858 EIF4G3O43432 1585 aaKnown RBP14.82□□□□□ -0.04
SCAMP1-202ENST00000506858 GAPVD1Q14C86 1478 aa14.81□□□□□ -0.04
SCAMP1-202ENST00000506858 WDR97A6NE52 1622 aa14.81□□□□□ -0.04
SCAMP1-202ENST00000506858 FBLN2P98095 1184 aa14.77□□□□□ -0.04
SCAMP1-202ENST00000506858 KIF27Q86VH2 1401 aa14.77□□□□□ -0.04
SCAMP1-202ENST00000506858 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
SCAMP1-202ENST00000506858 IGF1RP08069 1367 aa14.75□□□□□ -0.05
SCAMP1-202ENST00000506858 GRIN2BQ13224 1484 aa14.74□□□□□ -0.05
SCAMP1-202ENST00000506858 SNAPC4Q5SXM2 1469 aa14.74□□□□□ -0.05
SCAMP1-202ENST00000506858 EHMT2Q96KQ7 1210 aa14.73□□□□□ -0.05
SCAMP1-202ENST00000506858 PPP4R3CPQ6ZMV5 832 aa14.7□□□□□ -0.06
SCAMP1-202ENST00000506858 PBRM1Q86U86 1689 aa14.69□□□□□ -0.06
SCAMP1-202ENST00000506858 CHMP7Q8WUX9 453 aaPredicted RBP14.69□□□□□ -0.06
SCAMP1-202ENST00000506858 DMRT2Q9Y5R5 561 aa14.68□□□□□ -0.06
SCAMP1-202ENST00000506858 CSRNP3Q8WYN3 585 aa14.67□□□□□ -0.06
SCAMP1-202ENST00000506858 ERICH3Q5RHP9 1530 aa14.65□□□□□ -0.06
SCAMP1-202ENST00000506858 CARMIL1Q5VZK9 1371 aa14.65□□□□□ -0.06
SCAMP1-202ENST00000506858 MAGI1Q96QZ7 1491 aaPredicted RBP14.64□□□□□ -0.07
SCAMP1-202ENST00000506858 FHAD1B1AJZ9 1412 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms