RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 NISCHQ9Y2I1 1504 aa30.77■■■□□ 2.52
TCOF1-210ENST00000506767 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
TCOF1-210ENST00000506767 ABCC9O60706 1549 aa26.29■■□□□ 1.8
TCOF1-210ENST00000506767 ZCCHC6Q5VYS8 1495 aaKnown RBP25.7■■□□□ 1.7
TCOF1-210ENST00000506767 NACADO15069 1562 aa25.52■■□□□ 1.68
TCOF1-210ENST00000506767 DCAF8L2P0C7V8 631 aa25.5■■□□□ 1.67
TCOF1-210ENST00000506767 MYO15BQ96JP2 1530 aa25.5■■□□□ 1.67
TCOF1-210ENST00000506767 DCAF1Q9Y4B6 1507 aa25.5■■□□□ 1.67
TCOF1-210ENST00000506767 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
TCOF1-210ENST00000506767 UNC13AQ9UPW8 1703 aa24.92■■□□□ 1.58
TCOF1-210ENST00000506767 SCRIBQ14160 1630 aa24.83■■□□□ 1.56
TCOF1-210ENST00000506767 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
TCOF1-210ENST00000506767 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
TCOF1-210ENST00000506767 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
TCOF1-210ENST00000506767 DNAJC5BQ9UF47 199 aa24.45■■□□□ 1.5
TCOF1-210ENST00000506767 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
TCOF1-210ENST00000506767 CECR2Q9BXF3 1484 aa23.94■■□□□ 1.42
TCOF1-210ENST00000506767 CC2D2AQ9P2K1 1620 aa23.83■■□□□ 1.41
TCOF1-210ENST00000506767 BAZ1AQ9NRL2 1556 aaPredicted RBP23.82■■□□□ 1.4
TCOF1-210ENST00000506767 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
TCOF1-210ENST00000506767 MROH2BQ7Z745 1585 aa23.71■■□□□ 1.39
TCOF1-210ENST00000506767 ATAD2BQ9ULI0 1458 aa23.6■■□□□ 1.37
TCOF1-210ENST00000506767 PEG3Q9GZU2 1588 aa23.6■■□□□ 1.37
TCOF1-210ENST00000506767 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
TCOF1-210ENST00000506767 RSF1Q96T23 1441 aaPredicted RBP23.56■■□□□ 1.36
TCOF1-210ENST00000506767 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
TCOF1-210ENST00000506767 WIZO95785 1651 aa23.48■■□□□ 1.35
TCOF1-210ENST00000506767 HMGXB3Q12766 1538 aa23.46■■□□□ 1.35
TCOF1-210ENST00000506767 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.34
TCOF1-210ENST00000506767 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
TCOF1-210ENST00000506767 SUPT5HO00267 1087 aaKnown RBP23.12■■□□□ 1.29
TCOF1-210ENST00000506767 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
TCOF1-210ENST00000506767 NESP48681 1621 aa22.87■■□□□ 1.25
TCOF1-210ENST00000506767 LAMC3Q9Y6N6 1575 aa22.87■■□□□ 1.25
TCOF1-210ENST00000506767 CADPSQ9ULU8 1353 aa22.87■■□□□ 1.25
TCOF1-210ENST00000506767 CFTRP13569 1480 aa22.81■■□□□ 1.24
TCOF1-210ENST00000506767 PDS5BQ9NTI5 1447 aa22.68■■□□□ 1.22
TCOF1-210ENST00000506767 PRDM2Q13029 1718 aa22.66■■□□□ 1.22
TCOF1-210ENST00000506767 KIF21AQ7Z4S6 1674 aa22.62■■□□□ 1.21
TCOF1-210ENST00000506767 ERCC6Q03468 1493 aa22.61■■□□□ 1.21
TCOF1-210ENST00000506767 FANCD2Q9BXW9 1451 aa22.59■■□□□ 1.21
TCOF1-210ENST00000506767 CEP164Q9UPV0 1460 aa22.52■■□□□ 1.2
TCOF1-210ENST00000506767 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
TCOF1-210ENST00000506767 MRC2Q9UBG0 1479 aa22.43■■□□□ 1.18
TCOF1-210ENST00000506767 WDR62O43379 1518 aa22.37■■□□□ 1.17
TCOF1-210ENST00000506767 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
TCOF1-210ENST00000506767 DNAJC5Q9H3Z4 198 aa22.35■■□□□ 1.17
TCOF1-210ENST00000506767 CUX2O14529 1486 aa22.33■■□□□ 1.16
TCOF1-210ENST00000506767 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
TCOF1-210ENST00000506767 TOPBP1Q92547 1522 aa22.27■■□□□ 1.16
TCOF1-210ENST00000506767 DNMBPQ6XZF7 1577 aa22.27■■□□□ 1.16
TCOF1-210ENST00000506767 CUX1P39880 1505 aa22.22■■□□□ 1.15
TCOF1-210ENST00000506767 WRNQ14191 1432 aaPredicted RBP eCLIP22.18■■□□□ 1.14
TCOF1-210ENST00000506767 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
TCOF1-210ENST00000506767 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
TCOF1-210ENST00000506767 TOP2BQ02880 1626 aa22.12■■□□□ 1.13
TCOF1-210ENST00000506767 POLA1P09884 1462 aaPredicted RBP22.1■■□□□ 1.13
TCOF1-210ENST00000506767 FGD5Q6ZNL6 1462 aa22.09■■□□□ 1.13
TCOF1-210ENST00000506767 IFT140Q96RY7 1462 aa22.05■■□□□ 1.12
TCOF1-210ENST00000506767 TARBP1Q13395 1621 aaKnown RBP22.02■■□□□ 1.12
TCOF1-210ENST00000506767 SOGA1O94964 1423 aa22.01■■□□□ 1.11
TCOF1-210ENST00000506767 RAD54L2Q9Y4B4 1467 aa22■■□□□ 1.11
TCOF1-210ENST00000506767 ZNF608Q9ULD9 1512 aaPredicted RBP21.93■■□□□ 1.1
TCOF1-210ENST00000506767 WDR97A6NE52 1622 aa21.92■■□□□ 1.1
TCOF1-210ENST00000506767 ABCA10Q8WWZ4 1543 aa21.9■■□□□ 1.1
TCOF1-210ENST00000506767 EIF4G3O43432 1585 aaKnown RBP21.85■■□□□ 1.09
TCOF1-210ENST00000506767 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
TCOF1-210ENST00000506767 TRIM41Q8WV44 630 aa21.84■■□□□ 1.09
TCOF1-210ENST00000506767 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.096e-7■■■■□ 25.9
TCOF1-210ENST00000506767 CHIC1Q5VXU3 224 aa21.81■■□□□ 1.08
TCOF1-210ENST00000506767 ABCA5Q8WWZ7 1642 aa21.79■■□□□ 1.08
TCOF1-210ENST00000506767 GAPVD1Q14C86 1478 aa21.76■■□□□ 1.07
TCOF1-210ENST00000506767 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
TCOF1-210ENST00000506767 PBRM1Q86U86 1689 aa21.7■■□□□ 1.06
TCOF1-210ENST00000506767 KIF27Q86VH2 1401 aa21.69■■□□□ 1.06
TCOF1-210ENST00000506767 ERICH3Q5RHP9 1530 aa21.65■■□□□ 1.06
TCOF1-210ENST00000506767 SNAPC4Q5SXM2 1469 aa21.64■■□□□ 1.05
TCOF1-210ENST00000506767 MAGI1Q96QZ7 1491 aaPredicted RBP21.64■■□□□ 1.05
TCOF1-210ENST00000506767 RUSC2Q8N2Y8 1516 aa21.61■■□□□ 1.05
TCOF1-210ENST00000506767 IGF1RP08069 1367 aa21.6■■□□□ 1.05
TCOF1-210ENST00000506767 SYNJ2O15056 1496 aa21.55■■□□□ 1.04
TCOF1-210ENST00000506767 ADAMTS12P58397 1594 aa21.55■■□□□ 1.04
TCOF1-210ENST00000506767 FHAD1B1AJZ9 1412 aa21.53■■□□□ 1.04
TCOF1-210ENST00000506767 CHD1O14646 1710 aa21.52■■□□□ 1.04
TCOF1-210ENST00000506767 CUL7Q14999 1698 aa21.5■■□□□ 1.03
TCOF1-210ENST00000506767 EEA1Q15075 1411 aa21.49■■□□□ 1.03
TCOF1-210ENST00000506767 CHMP7Q8WUX9 453 aaPredicted RBP21.48■■□□□ 1.03
TCOF1-210ENST00000506767 OSCARQ8IYS5 282 aa21.47■■□□□ 1.03
TCOF1-210ENST00000506767 FBLN2P98095 1184 aa21.46■■□□□ 1.03
TCOF1-210ENST00000506767 CARMIL1Q5VZK9 1371 aa21.45■■□□□ 1.02
TCOF1-210ENST00000506767 GRIN2AQ12879 1464 aa21.44■■□□□ 1.02
TCOF1-210ENST00000506767 CSRNP3Q8WYN3 585 aa21.41■■□□□ 1.02
TCOF1-210ENST00000506767 PRXQ9BXM0 1461 aa21.39■■□□□ 1.01
TCOF1-210ENST00000506767 RAPGEF2Q9Y4G8 1499 aa21.36■■□□□ 1.01
TCOF1-210ENST00000506767 NUP160Q12769 1436 aa21.36■■□□□ 1.01
TCOF1-210ENST00000506767 FAM9AQ8IZU1 332 aaPredicted RBP21.35■■□□□ 1.01
TCOF1-210ENST00000506767 CEP170Q5SW79 1584 aa21.33■■□□□ 1.01
TCOF1-210ENST00000506767 CLASP1Q7Z460 1538 aa21.31■■□□□ 1
TCOF1-210ENST00000506767 KIF21BO75037 1637 aa21.26■□□□□ 0.99
TCOF1-210ENST00000506767 KIAA0586Q9BVV6 1533 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms