RNA–Protein interactions for RNA: ENST00000504339.1

LINC02239-201, Transcript of long intergenic non-protein coding RNA 2239, humanhuman

TSL 1 (best) BASIC

Gene LINC02239, Length 2,290 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02239-201ENST00000504339 NISCHQ9Y2I1 1504 aa19.82■□□□□ 0.76
LINC02239-201ENST00000504339 CCDC180Q9P1Z9 1646 aa16.98■□□□□ 0.31
LINC02239-201ENST00000504339 ZCCHC6Q5VYS8 1495 aaKnown RBP16.71■□□□□ 0.27
LINC02239-201ENST00000504339 SHROOM4Q9ULL8 1493 aa16.52■□□□□ 0.24
LINC02239-201ENST00000504339 DCAF8L2P0C7V8 631 aa16.35■□□□□ 0.21
LINC02239-201ENST00000504339 DCAF1Q9Y4B6 1507 aa16.31■□□□□ 0.2
LINC02239-201ENST00000504339 SUPT5HO00267 1087 aaKnown RBP16.04■□□□□ 0.16
LINC02239-201ENST00000504339 MYO15BQ96JP2 1530 aa15.97■□□□□ 0.15
LINC02239-201ENST00000504339 ABCC9O60706 1549 aa15.96■□□□□ 0.15
LINC02239-201ENST00000504339 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
LINC02239-201ENST00000504339 NACADO15069 1562 aa15.79■□□□□ 0.12
LINC02239-201ENST00000504339 RB1CC1Q8TDY2 1594 aa15.57■□□□□ 0.08
LINC02239-201ENST00000504339 RSF1Q96T23 1441 aaPredicted RBP15.56■□□□□ 0.08
LINC02239-201ENST00000504339 CHIC1Q5VXU3 224 aa15.53■□□□□ 0.08
LINC02239-201ENST00000504339 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
LINC02239-201ENST00000504339 AEBP2Q6ZN18 517 aaPredicted RBP15.4■□□□□ 0.06
LINC02239-201ENST00000504339 MROH2BQ7Z745 1585 aa15.38■□□□□ 0.05
LINC02239-201ENST00000504339 UNC13AQ9UPW8 1703 aa15.33■□□□□ 0.04
LINC02239-201ENST00000504339 WIZO95785 1651 aa15.25■□□□□ 0.03
LINC02239-201ENST00000504339 BICRAQ9NZM4 1560 aa15.23■□□□□ 0.03
LINC02239-201ENST00000504339 BAZ1AQ9NRL2 1556 aaPredicted RBP15.21■□□□□ 0.03
LINC02239-201ENST00000504339 PABPN1Q86U42 306 aaKnown RBP eCLIP15.2■□□□□ 0.02
LINC02239-201ENST00000504339 SMARCA4P51532 1647 aa15.14■□□□□ 0.01
LINC02239-201ENST00000504339 TOP2AP11388 1531 aaKnown RBP15.03■□□□□ -0
LINC02239-201ENST00000504339 LOC105371045A0A1W2PR82 267 aa15.02□□□□□ -0.01
LINC02239-201ENST00000504339 TRIM41Q8WV44 630 aa14.98□□□□□ -0.01
LINC02239-201ENST00000504339 EIF4G1Q04637 1599 aaKnown RBP14.98□□□□□ -0.01
LINC02239-201ENST00000504339 CCDC88BA6NC98 1476 aa14.96□□□□□ -0.01
LINC02239-201ENST00000504339 SMARCA2P51531 1590 aa14.94□□□□□ -0.02
LINC02239-201ENST00000504339 PEG3Q9GZU2 1588 aa14.92□□□□□ -0.02
LINC02239-201ENST00000504339 ATAD2BQ9ULI0 1458 aa14.86□□□□□ -0.03
LINC02239-201ENST00000504339 FAM9AQ8IZU1 332 aaPredicted RBP14.81□□□□□ -0.04
LINC02239-201ENST00000504339 ABCC8Q09428 1581 aa14.77□□□□□ -0.04
LINC02239-201ENST00000504339 BAZ1BQ9UIG0 1483 aaKnown RBP14.74□□□□□ -0.05
LINC02239-201ENST00000504339 NCAPD3P42695 1498 aa14.65□□□□□ -0.06
LINC02239-201ENST00000504339 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
LINC02239-201ENST00000504339 PCGF6Q9BYE7 350 aa14.61□□□□□ -0.07
LINC02239-201ENST00000504339 SOGA1O94964 1423 aa14.6□□□□□ -0.07
LINC02239-201ENST00000504339 HMGXB3Q12766 1538 aa14.59□□□□□ -0.07
LINC02239-201ENST00000504339 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.08
LINC02239-201ENST00000504339 RUSC2Q8N2Y8 1516 aa14.56□□□□□ -0.08
LINC02239-201ENST00000504339 SYNJ1O43426 1573 aa14.54□□□□□ -0.08
LINC02239-201ENST00000504339 CSRNP3Q8WYN3 585 aa14.46□□□□□ -0.09
LINC02239-201ENST00000504339 EEA1Q15075 1411 aa14.45□□□□□ -0.1
LINC02239-201ENST00000504339 TRIM26Q12899 539 aaPredicted RBP14.44□□□□□ -0.1
LINC02239-201ENST00000504339 CFTRP13569 1480 aa14.43□□□□□ -0.1
LINC02239-201ENST00000504339 HRCP23327 699 aa14.42□□□□□ -0.1
LINC02239-201ENST00000504339 CC2D2AQ9P2K1 1620 aa14.4□□□□□ -0.1
LINC02239-201ENST00000504339 TOP2BQ02880 1626 aa14.39□□□□□ -0.11
LINC02239-201ENST00000504339 TNIKQ9UKE5 1360 aa14.37□□□□□ -0.11
LINC02239-201ENST00000504339 BIVM-ERCC5R4GMW8 1640 aa14.34□□□□□ -0.11
LINC02239-201ENST00000504339 CUX1P39880 1505 aa14.34□□□□□ -0.11
LINC02239-201ENST00000504339 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
LINC02239-201ENST00000504339 GOLGA3Q08378 1498 aa14.32□□□□□ -0.12
LINC02239-201ENST00000504339 CADPSQ9ULU8 1353 aa14.31□□□□□ -0.12
LINC02239-201ENST00000504339 PPARGC1BQ86YN6 1023 aaKnown RBP14.3□□□□□ -0.12
LINC02239-201ENST00000504339 UBTFP17480 764 aaKnown RBP14.29□□□□□ -0.12
LINC02239-201ENST00000504339 CEP164Q9UPV0 1460 aa14.28□□□□□ -0.12
LINC02239-201ENST00000504339 KIF21BO75037 1637 aa14.27□□□□□ -0.12
LINC02239-201ENST00000504339 RAPGEF2Q9Y4G8 1499 aa14.26□□□□□ -0.13
LINC02239-201ENST00000504339 PRDM2Q13029 1718 aa14.21□□□□□ -0.13
LINC02239-201ENST00000504339 DNAJC5BQ9UF47 199 aa14.21□□□□□ -0.14
LINC02239-201ENST00000504339 PRXQ9BXM0 1461 aa14.19□□□□□ -0.14
LINC02239-201ENST00000504339 NESP48681 1621 aa14.16□□□□□ -0.14
LINC02239-201ENST00000504339 FANCD2Q9BXW9 1451 aa14.15□□□□□ -0.14
LINC02239-201ENST00000504339 KIF27Q86VH2 1401 aa14.15□□□□□ -0.14
LINC02239-201ENST00000504339 CLIP1P30622 1438 aa14.14□□□□□ -0.15
LINC02239-201ENST00000504339 ERICH3Q5RHP9 1530 aa14.12□□□□□ -0.15
LINC02239-201ENST00000504339 FGD5Q6ZNL6 1462 aa14.11□□□□□ -0.15
LINC02239-201ENST00000504339 IGF1RP08069 1367 aa14.09□□□□□ -0.15
LINC02239-201ENST00000504339 TTBK1Q5TCY1 1321 aaPredicted RBP14.08□□□□□ -0.16
LINC02239-201ENST00000504339 CUX2O14529 1486 aa14.08□□□□□ -0.16
LINC02239-201ENST00000504339 VPS8Q8N3P4 1428 aa14.05□□□□□ -0.16
LINC02239-201ENST00000504339 RANGAP1P46060 587 aaPredicted RBP14.05□□□□□ -0.16
LINC02239-201ENST00000504339 TOPBP1Q92547 1522 aa14.03□□□□□ -0.16
LINC02239-201ENST00000504339 DNMBPQ6XZF7 1577 aa14.02□□□□□ -0.16
LINC02239-201ENST00000504339 LAMC3Q9Y6N6 1575 aa14.02□□□□□ -0.17
LINC02239-201ENST00000504339 RAD54L2Q9Y4B4 1467 aa14.02□□□□□ -0.17
LINC02239-201ENST00000504339 POLA1P09884 1462 aaPredicted RBP14.01□□□□□ -0.17
LINC02239-201ENST00000504339 ARAP1Q96P48 1450 aa14□□□□□ -0.17
LINC02239-201ENST00000504339 URB2Q14146 1524 aaKnown RBP13.99□□□□□ -0.17
LINC02239-201ENST00000504339 CARMIL1Q5VZK9 1371 aa13.97□□□□□ -0.17
LINC02239-201ENST00000504339 ABCA10Q8WWZ4 1543 aa13.97□□□□□ -0.17
LINC02239-201ENST00000504339 ARHGAP35Q9NRY4 1499 aa13.93□□□□□ -0.18
LINC02239-201ENST00000504339 PDS5BQ9NTI5 1447 aa13.93□□□□□ -0.18
LINC02239-201ENST00000504339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.92□□□□□ -0.18
LINC02239-201ENST00000504339 ZEB1P37275 1124 aaPredicted RBP13.92□□□□□ -0.18
LINC02239-201ENST00000504339 KIF21AQ7Z4S6 1674 aa13.88□□□□□ -0.19
LINC02239-201ENST00000504339 KANK4Q5T7N3 995 aaPredicted RBP13.87□□□□□ -0.19
LINC02239-201ENST00000504339 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
LINC02239-201ENST00000504339 TDRD9Q8NDG6 1382 aaKnown RBP13.85□□□□□ -0.19
LINC02239-201ENST00000504339 APLP2Q06481 763 aa13.84□□□□□ -0.19
LINC02239-201ENST00000504339 ABCA5Q8WWZ7 1642 aa13.82□□□□□ -0.2
LINC02239-201ENST00000504339 CCER1Q8TC90 406 aaPredicted RBP13.81□□□□□ -0.2
LINC02239-201ENST00000504339 TARBP1Q13395 1621 aaKnown RBP13.79□□□□□ -0.2
LINC02239-201ENST00000504339 GAPVD1Q14C86 1478 aa13.79□□□□□ -0.2
LINC02239-201ENST00000504339 CUL7Q14999 1698 aa13.78□□□□□ -0.2
LINC02239-201ENST00000504339 HNRNPUL2Q1KMD3 747 aaKnown RBP13.78□□□□□ -0.2
LINC02239-201ENST00000504339 MRC2Q9UBG0 1479 aa13.74□□□□□ -0.21
LINC02239-201ENST00000504339 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms