RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 NISCHQ9Y2I1 1504 aa26.69■■□□□ 1.86
VCAN-205ENST00000503923 CCDC180Q9P1Z9 1646 aa23.66■■□□□ 1.38
VCAN-205ENST00000503923 ABCC9O60706 1549 aa22.94■■□□□ 1.26
VCAN-205ENST00000503923 ZCCHC6Q5VYS8 1495 aaKnown RBP22.27■■□□□ 1.16
VCAN-205ENST00000503923 DCAF8L2P0C7V8 631 aa22.22■■□□□ 1.15
VCAN-205ENST00000503923 NACADO15069 1562 aa22.2■■□□□ 1.14
VCAN-205ENST00000503923 RB1CC1Q8TDY2 1594 aa22.18■■□□□ 1.14
VCAN-205ENST00000503923 MYO15BQ96JP2 1530 aa22.13■■□□□ 1.13
VCAN-205ENST00000503923 DCAF1Q9Y4B6 1507 aa22.1■■□□□ 1.13
VCAN-205ENST00000503923 UNC13AQ9UPW8 1703 aa21.66■■□□□ 1.06
VCAN-205ENST00000503923 SCRIBQ14160 1630 aa21.58■■□□□ 1.04
VCAN-205ENST00000503923 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
VCAN-205ENST00000503923 BICRAQ9NZM4 1560 aa21.47■■□□□ 1.03
VCAN-205ENST00000503923 SHROOM4Q9ULL8 1493 aa21.3■■□□□ 1
VCAN-205ENST00000503923 EIF4G1Q04637 1599 aaKnown RBP20.9■□□□□ 0.94
VCAN-205ENST00000503923 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
VCAN-205ENST00000503923 CC2D2AQ9P2K1 1620 aa20.78■□□□□ 0.92
VCAN-205ENST00000503923 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
VCAN-205ENST00000503923 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
VCAN-205ENST00000503923 SMARCA4P51532 1647 aa20.67■□□□□ 0.9
VCAN-205ENST00000503923 MROH2BQ7Z745 1585 aa20.55■□□□□ 0.88
VCAN-205ENST00000503923 ATAD2BQ9ULI0 1458 aa20.51■□□□□ 0.87
VCAN-205ENST00000503923 SMARCA2P51531 1590 aa20.51■□□□□ 0.87
VCAN-205ENST00000503923 NCAPD3P42695 1498 aa20.48■□□□□ 0.87
VCAN-205ENST00000503923 PEG3Q9GZU2 1588 aa20.46■□□□□ 0.87
VCAN-205ENST00000503923 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
VCAN-205ENST00000503923 RSF1Q96T23 1441 aaPredicted RBP20.39■□□□□ 0.85
VCAN-205ENST00000503923 BAZ1BQ9UIG0 1483 aaKnown RBP20.36■□□□□ 0.85
VCAN-205ENST00000503923 WIZO95785 1651 aa20.35■□□□□ 0.85
VCAN-205ENST00000503923 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
VCAN-205ENST00000503923 SUPT5HO00267 1087 aaKnown RBP20.01■□□□□ 0.79
VCAN-205ENST00000503923 CCDC88BA6NC98 1476 aa19.91■□□□□ 0.78
VCAN-205ENST00000503923 LAMC3Q9Y6N6 1575 aa19.91■□□□□ 0.78
VCAN-205ENST00000503923 NESP48681 1621 aa19.9■□□□□ 0.78
VCAN-205ENST00000503923 CADPSQ9ULU8 1353 aa19.89■□□□□ 0.77
VCAN-205ENST00000503923 CFTRP13569 1480 aa19.8■□□□□ 0.76
VCAN-205ENST00000503923 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
VCAN-205ENST00000503923 PDS5BQ9NTI5 1447 aa19.77■□□□□ 0.76
VCAN-205ENST00000503923 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
VCAN-205ENST00000503923 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
VCAN-205ENST00000503923 FANCD2Q9BXW9 1451 aa19.66■□□□□ 0.74
VCAN-205ENST00000503923 CEP164Q9UPV0 1460 aa19.62■□□□□ 0.73
VCAN-205ENST00000503923 THOC2Q8NI27 1593 aaKnown RBP19.57■□□□□ 0.72
VCAN-205ENST00000503923 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
VCAN-205ENST00000503923 CUX2O14529 1486 aa19.51■□□□□ 0.71
VCAN-205ENST00000503923 WDR62O43379 1518 aa19.48■□□□□ 0.71
VCAN-205ENST00000503923 URB2Q14146 1524 aaKnown RBP19.43■□□□□ 0.7
VCAN-205ENST00000503923 ABCC8Q09428 1581 aa19.4■□□□□ 0.7
VCAN-205ENST00000503923 DNMBPQ6XZF7 1577 aa19.36■□□□□ 0.69
VCAN-205ENST00000503923 TOPBP1Q92547 1522 aa19.36■□□□□ 0.69
VCAN-205ENST00000503923 CUX1P39880 1505 aa19.27■□□□□ 0.68
VCAN-205ENST00000503923 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
VCAN-205ENST00000503923 POLA1P09884 1462 aaPredicted RBP19.21■□□□□ 0.67
VCAN-205ENST00000503923 IFT140Q96RY7 1462 aa19.21■□□□□ 0.67
VCAN-205ENST00000503923 FGD5Q6ZNL6 1462 aa19.19■□□□□ 0.66
VCAN-205ENST00000503923 TOP2BQ02880 1626 aa19.17■□□□□ 0.66
VCAN-205ENST00000503923 BIVM-ERCC5R4GMW8 1640 aa19.17■□□□□ 0.66
VCAN-205ENST00000503923 SYNJ1O43426 1573 aa19.16■□□□□ 0.66
VCAN-205ENST00000503923 SOGA1O94964 1423 aa19.14■□□□□ 0.65
VCAN-205ENST00000503923 TARBP1Q13395 1621 aaKnown RBP19.13■□□□□ 0.65
VCAN-205ENST00000503923 RAD54L2Q9Y4B4 1467 aa19.11■□□□□ 0.65
VCAN-205ENST00000503923 ZNF608Q9ULD9 1512 aaPredicted RBP19.08■□□□□ 0.64
VCAN-205ENST00000503923 WDR97A6NE52 1622 aa19.03■□□□□ 0.64
VCAN-205ENST00000503923 EIF4G3O43432 1585 aaKnown RBP19.02■□□□□ 0.64
VCAN-205ENST00000503923 ABCA10Q8WWZ4 1543 aa19.02■□□□□ 0.64
VCAN-205ENST00000503923 AQRO60306 1485 aaKnown RBP eCLIP19■□□□□ 0.63
VCAN-205ENST00000503923 TDRD9Q8NDG6 1382 aaKnown RBP18.99■□□□□ 0.63
VCAN-205ENST00000503923 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
VCAN-205ENST00000503923 GAPVD1Q14C86 1478 aa18.92■□□□□ 0.62
VCAN-205ENST00000503923 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
VCAN-205ENST00000503923 GRIN2BQ13224 1484 aa18.9■□□□□ 0.62
VCAN-205ENST00000503923 PBRM1Q86U86 1689 aa18.87■□□□□ 0.61
VCAN-205ENST00000503923 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
VCAN-205ENST00000503923 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
VCAN-205ENST00000503923 KIF27Q86VH2 1401 aa18.83■□□□□ 0.6
VCAN-205ENST00000503923 ERICH3Q5RHP9 1530 aa18.8■□□□□ 0.6
VCAN-205ENST00000503923 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
VCAN-205ENST00000503923 SYNJ2O15056 1496 aa18.75■□□□□ 0.59
VCAN-205ENST00000503923 CHD1O14646 1710 aa18.74■□□□□ 0.59
VCAN-205ENST00000503923 FBLN2P98095 1184 aa18.74■□□□□ 0.59
VCAN-205ENST00000503923 ADAMTS12P58397 1594 aa18.73■□□□□ 0.59
VCAN-205ENST00000503923 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
VCAN-205ENST00000503923 CHMP7Q8WUX9 453 aaPredicted RBP18.73■□□□□ 0.59
VCAN-205ENST00000503923 FHAD1B1AJZ9 1412 aa18.72■□□□□ 0.59
VCAN-205ENST00000503923 IGF1RP08069 1367 aa18.71■□□□□ 0.59
VCAN-205ENST00000503923 RUSC2Q8N2Y8 1516 aa18.68■□□□□ 0.58
VCAN-205ENST00000503923 CUL7Q14999 1698 aa18.67■□□□□ 0.58
VCAN-205ENST00000503923 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
VCAN-205ENST00000503923 GRIN2AQ12879 1464 aa18.65■□□□□ 0.58
VCAN-205ENST00000503923 CARMIL1Q5VZK9 1371 aa18.62■□□□□ 0.57
VCAN-205ENST00000503923 EEA1Q15075 1411 aa18.6■□□□□ 0.57
VCAN-205ENST00000503923 NUP160Q12769 1436 aa18.56■□□□□ 0.56
VCAN-205ENST00000503923 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
VCAN-205ENST00000503923 CSRNP3Q8WYN3 585 aa18.54■□□□□ 0.56
VCAN-205ENST00000503923 CEP170Q5SW79 1584 aa18.54■□□□□ 0.56
VCAN-205ENST00000503923 RAPGEF2Q9Y4G8 1499 aa18.53■□□□□ 0.56
VCAN-205ENST00000503923 PRXQ9BXM0 1461 aa18.5■□□□□ 0.55
VCAN-205ENST00000503923 FAM9AQ8IZU1 332 aaPredicted RBP18.49■□□□□ 0.55
VCAN-205ENST00000503923 KIAA0586Q9BVV6 1533 aa18.44■□□□□ 0.54
VCAN-205ENST00000503923 ARHGEF11O15085 1522 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms