RNA–Protein interactions for RNA: ENST00000502187.5

LINC01550-202, Transcript of long intergenic non-protein coding RNA 1550, humanhuman

TSL 2 BASIC

Gene LINC01550, Length 2,455 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01550-202ENST00000502187 NISCHQ9Y2I1 1504 aa20.79■□□□□ 0.92
LINC01550-202ENST00000502187 CCDC180Q9P1Z9 1646 aa18.26■□□□□ 0.51
LINC01550-202ENST00000502187 CHIC1Q5VXU3 224 aa18■□□□□ 0.47
LINC01550-202ENST00000502187 ZCCHC6Q5VYS8 1495 aaKnown RBP17.45■□□□□ 0.38
LINC01550-202ENST00000502187 ABCC9O60706 1549 aa17.41■□□□□ 0.38
LINC01550-202ENST00000502187 DCAF8L2P0C7V8 631 aa17.3■□□□□ 0.36
LINC01550-202ENST00000502187 AEBP2Q6ZN18 517 aaPredicted RBP17.27■□□□□ 0.36
LINC01550-202ENST00000502187 DCAF1Q9Y4B6 1507 aa17.21■□□□□ 0.35
LINC01550-202ENST00000502187 MYO15BQ96JP2 1530 aa17.06■□□□□ 0.32
LINC01550-202ENST00000502187 NACADO15069 1562 aa17.01■□□□□ 0.31
LINC01550-202ENST00000502187 RB1CC1Q8TDY2 1594 aa16.91■□□□□ 0.3
LINC01550-202ENST00000502187 SHROOM4Q9ULL8 1493 aa16.82■□□□□ 0.28
LINC01550-202ENST00000502187 SCRIBQ14160 1630 aa16.73■□□□□ 0.27
LINC01550-202ENST00000502187 UNC13AQ9UPW8 1703 aa16.59■□□□□ 0.25
LINC01550-202ENST00000502187 PABPN1Q86U42 306 aaKnown RBP eCLIP16.43■□□□□ 0.22
LINC01550-202ENST00000502187 BICRAQ9NZM4 1560 aa16.36■□□□□ 0.21
LINC01550-202ENST00000502187 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
LINC01550-202ENST00000502187 CECR2Q9BXF3 1484 aa16.13■□□□□ 0.17
LINC01550-202ENST00000502187 SUPT5HO00267 1087 aaKnown RBP16.1■□□□□ 0.17
LINC01550-202ENST00000502187 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
LINC01550-202ENST00000502187 MROH2BQ7Z745 1585 aa16.04■□□□□ 0.16
LINC01550-202ENST00000502187 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
LINC01550-202ENST00000502187 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
LINC01550-202ENST00000502187 WIZO95785 1651 aa15.93■□□□□ 0.14
LINC01550-202ENST00000502187 EIF4G1Q04637 1599 aaKnown RBP15.9■□□□□ 0.14
LINC01550-202ENST00000502187 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
LINC01550-202ENST00000502187 PEG3Q9GZU2 1588 aa15.84■□□□□ 0.13
LINC01550-202ENST00000502187 SMARCA2P51531 1590 aa15.8■□□□□ 0.12
LINC01550-202ENST00000502187 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.12
LINC01550-202ENST00000502187 TOP2AP11388 1531 aaKnown RBP15.77■□□□□ 0.12
LINC01550-202ENST00000502187 CC2D2AQ9P2K1 1620 aa15.7■□□□□ 0.1
LINC01550-202ENST00000502187 BAZ1BQ9UIG0 1483 aaKnown RBP15.7■□□□□ 0.1
LINC01550-202ENST00000502187 DNAJC5BQ9UF47 199 aa15.68■□□□□ 0.1
LINC01550-202ENST00000502187 SLC24A1O60721 1099 aa15.67■□□□□ 0.1
LINC01550-202ENST00000502187 HMGXB3Q12766 1538 aa15.67■□□□□ 0.1
LINC01550-202ENST00000502187 NCAPD3P42695 1498 aa15.66■□□□□ 0.1
LINC01550-202ENST00000502187 CCDC88BA6NC98 1476 aa15.56■□□□□ 0.08
LINC01550-202ENST00000502187 PRDM2Q13029 1718 aa15.3■□□□□ 0.04
LINC01550-202ENST00000502187 CFTRP13569 1480 aa15.28■□□□□ 0.04
LINC01550-202ENST00000502187 CADPSQ9ULU8 1353 aa15.24■□□□□ 0.03
LINC01550-202ENST00000502187 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
LINC01550-202ENST00000502187 LAMC3Q9Y6N6 1575 aa15.2■□□□□ 0.02
LINC01550-202ENST00000502187 NESP48681 1621 aa15.17■□□□□ 0.02
LINC01550-202ENST00000502187 PLPPR3Q6T4P5 718 aa15.17■□□□□ 0.02
LINC01550-202ENST00000502187 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
LINC01550-202ENST00000502187 WRNQ14191 1432 aaPredicted RBP eCLIP15.13■□□□□ 0.01
LINC01550-202ENST00000502187 FANCD2Q9BXW9 1451 aa15.1■□□□□ 0.01
LINC01550-202ENST00000502187 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
LINC01550-202ENST00000502187 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
LINC01550-202ENST00000502187 PDS5BQ9NTI5 1447 aa15.05■□□□□ 0
LINC01550-202ENST00000502187 KCNA4P22459 653 aa15.05■□□□□ 0
LINC01550-202ENST00000502187 TOP2BQ02880 1626 aa15.05■□□□□ -0
LINC01550-202ENST00000502187 KIF21AQ7Z4S6 1674 aa15.04■□□□□ -0
LINC01550-202ENST00000502187 CEP164Q9UPV0 1460 aa15.03■□□□□ -0
LINC01550-202ENST00000502187 CUX1P39880 1505 aa15.02□□□□□ -0.01
LINC01550-202ENST00000502187 DNMBPQ6XZF7 1577 aa14.96□□□□□ -0.01
LINC01550-202ENST00000502187 ERCC6Q03468 1493 aa14.96□□□□□ -0.01
LINC01550-202ENST00000502187 CSRNP3Q8WYN3 585 aa14.92□□□□□ -0.02
LINC01550-202ENST00000502187 TOPBP1Q92547 1522 aa14.92□□□□□ -0.02
LINC01550-202ENST00000502187 URB2Q14146 1524 aaKnown RBP14.91□□□□□ -0.02
LINC01550-202ENST00000502187 FGD5Q6ZNL6 1462 aa14.89□□□□□ -0.03
LINC01550-202ENST00000502187 MRC2Q9UBG0 1479 aa14.88□□□□□ -0.03
LINC01550-202ENST00000502187 FAM9AQ8IZU1 332 aaPredicted RBP14.87□□□□□ -0.03
LINC01550-202ENST00000502187 SOGA1O94964 1423 aa14.86□□□□□ -0.03
LINC01550-202ENST00000502187 EEA1Q15075 1411 aa14.86□□□□□ -0.03
LINC01550-202ENST00000502187 POLA1P09884 1462 aaPredicted RBP14.83□□□□□ -0.03
LINC01550-202ENST00000502187 THOC2Q8NI27 1593 aaKnown RBP14.82□□□□□ -0.04
LINC01550-202ENST00000502187 WDR62O43379 1518 aa14.82□□□□□ -0.04
LINC01550-202ENST00000502187 RUSC2Q8N2Y8 1516 aa14.82□□□□□ -0.04
LINC01550-202ENST00000502187 RTN4Q9NQC3 1192 aaKnown RBP14.78□□□□□ -0.04
LINC01550-202ENST00000502187 WDR97A6NE52 1622 aa14.77□□□□□ -0.05
LINC01550-202ENST00000502187 KIF27Q86VH2 1401 aa14.76□□□□□ -0.05
LINC01550-202ENST00000502187 RAD54L2Q9Y4B4 1467 aa14.76□□□□□ -0.05
LINC01550-202ENST00000502187 CUX2O14529 1486 aa14.76□□□□□ -0.05
LINC01550-202ENST00000502187 ABCA10Q8WWZ4 1543 aa14.75□□□□□ -0.05
LINC01550-202ENST00000502187 TARBP1Q13395 1621 aaKnown RBP14.72□□□□□ -0.05
LINC01550-202ENST00000502187 LOC105371045A0A1W2PR82 267 aa14.71□□□□□ -0.05
LINC01550-202ENST00000502187 KIF21BO75037 1637 aa14.69□□□□□ -0.06
LINC01550-202ENST00000502187 IFT140Q96RY7 1462 aa14.67□□□□□ -0.06
LINC01550-202ENST00000502187 ABCA5Q8WWZ7 1642 aa14.67□□□□□ -0.06
LINC01550-202ENST00000502187 GOLGA3Q08378 1498 aa14.65□□□□□ -0.06
LINC01550-202ENST00000502187 TDRD9Q8NDG6 1382 aaKnown RBP14.64□□□□□ -0.07
LINC01550-202ENST00000502187 GAPVD1Q14C86 1478 aa14.61□□□□□ -0.07
LINC01550-202ENST00000502187 PRXQ9BXM0 1461 aa14.61□□□□□ -0.07
LINC01550-202ENST00000502187 ERICH3Q5RHP9 1530 aa14.61□□□□□ -0.07
LINC01550-202ENST00000502187 PBRM1Q86U86 1689 aa14.61□□□□□ -0.07
LINC01550-202ENST00000502187 IGF1RP08069 1367 aa14.6□□□□□ -0.07
LINC01550-202ENST00000502187 CUL7Q14999 1698 aa14.6□□□□□ -0.07
LINC01550-202ENST00000502187 RAPGEF2Q9Y4G8 1499 aa14.59□□□□□ -0.07
LINC01550-202ENST00000502187 EIF4G3O43432 1585 aaKnown RBP14.58□□□□□ -0.08
LINC01550-202ENST00000502187 ZNF608Q9ULD9 1512 aaPredicted RBP14.57□□□□□ -0.08
LINC01550-202ENST00000502187 AQRO60306 1485 aaKnown RBP eCLIP14.57□□□□□ -0.08
LINC01550-202ENST00000502187 CARMIL1Q5VZK9 1371 aa14.55□□□□□ -0.08
LINC01550-202ENST00000502187 UBTFP17480 764 aaKnown RBP14.55□□□□□ -0.08
LINC01550-202ENST00000502187 TNIKQ9UKE5 1360 aa14.54□□□□□ -0.08
LINC01550-202ENST00000502187 GRIN2BQ13224 1484 aa14.53□□□□□ -0.08
LINC01550-202ENST00000502187 ADAMTS12P58397 1594 aa14.49□□□□□ -0.09
LINC01550-202ENST00000502187 ADRA2BP18089 450 aa14.47□□□□□ -0.09
LINC01550-202ENST00000502187 AMER1Q5JTC6 1135 aaPredicted RBP14.47□□□□□ -0.09
LINC01550-202ENST00000502187 CEP162Q5TB80 1403 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms