RNA–Protein interactions for RNA: ENST00000500869.6

LYSMD3-203, Transcript of LysM domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LYSMD3, Length 3,863 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-203ENST00000500869 NISCHQ9Y2I1 1504 aa15.41■□□□□ 0.06
LYSMD3-203ENST00000500869 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
LYSMD3-203ENST00000500869 ZCCHC6Q5VYS8 1495 aaKnown RBP13.11□□□□□ -0.31
LYSMD3-203ENST00000500869 DCAF1Q9Y4B6 1507 aa12.89□□□□□ -0.35
LYSMD3-203ENST00000500869 SHROOM4Q9ULL8 1493 aa12.59□□□□□ -0.39
LYSMD3-203ENST00000500869 MYO15BQ96JP2 1530 aa12.56□□□□□ -0.4
LYSMD3-203ENST00000500869 ABCC9O60706 1549 aa12.4□□□□□ -0.42
LYSMD3-203ENST00000500869 SUPT5HO00267 1087 aaKnown RBP12.31□□□□□ -0.44
LYSMD3-203ENST00000500869 CHIC1Q5VXU3 224 aa12.25□□□□□ -0.45
LYSMD3-203ENST00000500869 NACADO15069 1562 aa12.2□□□□□ -0.46
LYSMD3-203ENST00000500869 SCRIBQ14160 1630 aa12.12□□□□□ -0.47
LYSMD3-203ENST00000500869 RB1CC1Q8TDY2 1594 aa12.11□□□□□ -0.47
LYSMD3-203ENST00000500869 RSF1Q96T23 1441 aaPredicted RBP12.09□□□□□ -0.47
LYSMD3-203ENST00000500869 DCAF8L2P0C7V8 631 aa12.02□□□□□ -0.48
LYSMD3-203ENST00000500869 EIF4G1Q04637 1599 aaKnown RBP11.95□□□□□ -0.5
LYSMD3-203ENST00000500869 BAZ1AQ9NRL2 1556 aaPredicted RBP11.94□□□□□ -0.5
LYSMD3-203ENST00000500869 HRCP23327 699 aa11.92□□□□□ -0.5
LYSMD3-203ENST00000500869 MROH2BQ7Z745 1585 aa11.88□□□□□ -0.51
LYSMD3-203ENST00000500869 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.51
LYSMD3-203ENST00000500869 UNC13AQ9UPW8 1703 aa11.83□□□□□ -0.52
LYSMD3-203ENST00000500869 WIZO95785 1651 aa11.83□□□□□ -0.52
LYSMD3-203ENST00000500869 TOP2AP11388 1531 aaKnown RBP11.78□□□□□ -0.52
LYSMD3-203ENST00000500869 SMARCA4P51532 1647 aa11.76□□□□□ -0.53
LYSMD3-203ENST00000500869 PEG3Q9GZU2 1588 aa11.71□□□□□ -0.54
LYSMD3-203ENST00000500869 SMARCA2P51531 1590 aa11.68□□□□□ -0.54
LYSMD3-203ENST00000500869 LOC105371045A0A1W2PR82 267 aa11.67□□□□□ -0.54
LYSMD3-203ENST00000500869 TRIM26Q12899 539 aaPredicted RBP11.67□□□□□ -0.54
LYSMD3-203ENST00000500869 PCGF6Q9BYE7 350 aa11.66□□□□□ -0.54
LYSMD3-203ENST00000500869 BICRAQ9NZM4 1560 aa11.63□□□□□ -0.55
LYSMD3-203ENST00000500869 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
LYSMD3-203ENST00000500869 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
LYSMD3-203ENST00000500869 WRNQ14191 1432 aaPredicted RBP eCLIP11.53□□□□□ -0.56
LYSMD3-203ENST00000500869 EEA1Q15075 1411 aa11.53□□□□□ -0.56
LYSMD3-203ENST00000500869 ZEB1P37275 1124 aaPredicted RBP11.51□□□□□ -0.57
LYSMD3-203ENST00000500869 ABCC8Q09428 1581 aa11.46□□□□□ -0.57
LYSMD3-203ENST00000500869 KIF21BO75037 1637 aa11.43□□□□□ -0.58
LYSMD3-203ENST00000500869 TNIKQ9UKE5 1360 aa11.4□□□□□ -0.58
LYSMD3-203ENST00000500869 PPARGC1BQ86YN6 1023 aaKnown RBP11.4□□□□□ -0.58
LYSMD3-203ENST00000500869 ATAD2BQ9ULI0 1458 aa11.37□□□□□ -0.59
LYSMD3-203ENST00000500869 BIVM-ERCC5R4GMW8 1640 aa11.36□□□□□ -0.59
LYSMD3-203ENST00000500869 SYNJ1O43426 1573 aa11.35□□□□□ -0.59
LYSMD3-203ENST00000500869 GOLGA3Q08378 1498 aa11.34□□□□□ -0.59
LYSMD3-203ENST00000500869 CEP162Q5TB80 1403 aa11.34□□□□□ -0.59
LYSMD3-203ENST00000500869 HMGXB3Q12766 1538 aa11.33□□□□□ -0.6
LYSMD3-203ENST00000500869 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
LYSMD3-203ENST00000500869 SOGA1O94964 1423 aa11.32□□□□□ -0.6
LYSMD3-203ENST00000500869 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
LYSMD3-203ENST00000500869 FAM9AQ8IZU1 332 aaPredicted RBP11.29□□□□□ -0.6
LYSMD3-203ENST00000500869 CEP164Q9UPV0 1460 aa11.29□□□□□ -0.6
LYSMD3-203ENST00000500869 PRDM2Q13029 1718 aa11.28□□□□□ -0.6
LYSMD3-203ENST00000500869 RUSC2Q8N2Y8 1516 aa11.26□□□□□ -0.61
LYSMD3-203ENST00000500869 ERICH3Q5RHP9 1530 aa11.24□□□□□ -0.61
LYSMD3-203ENST00000500869 CSRNP3Q8WYN3 585 aa11.22□□□□□ -0.61
LYSMD3-203ENST00000500869 NCAPD3P42695 1498 aa11.21□□□□□ -0.61
LYSMD3-203ENST00000500869 VPS8Q8N3P4 1428 aa11.15□□□□□ -0.62
LYSMD3-203ENST00000500869 PRXQ9BXM0 1461 aa11.14□□□□□ -0.63
LYSMD3-203ENST00000500869 CFTRP13569 1480 aa11.11□□□□□ -0.63
LYSMD3-203ENST00000500869 CLIP1P30622 1438 aa11.1□□□□□ -0.63
LYSMD3-203ENST00000500869 PABPN1Q86U42 306 aaKnown RBP eCLIP11.1□□□□□ -0.63
LYSMD3-203ENST00000500869 RAPGEF2Q9Y4G8 1499 aa11.1□□□□□ -0.63
LYSMD3-203ENST00000500869 CUX1P39880 1505 aa11.1□□□□□ -0.63
LYSMD3-203ENST00000500869 ARAP1Q96P48 1450 aa11.04□□□□□ -0.64
LYSMD3-203ENST00000500869 CUX2O14529 1486 aa11.02□□□□□ -0.65
LYSMD3-203ENST00000500869 MAP3K1Q13233 1512 aa11.01□□□□□ -0.65
LYSMD3-203ENST00000500869 CCER1Q8TC90 406 aaPredicted RBP10.99□□□□□ -0.65
LYSMD3-203ENST00000500869 EHMT2Q96KQ7 1210 aa10.99□□□□□ -0.65
LYSMD3-203ENST00000500869 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.98□□□□□ -0.65
LYSMD3-203ENST00000500869 UBTFP17480 764 aaKnown RBP10.98□□□□□ -0.65
LYSMD3-203ENST00000500869 KIF27Q86VH2 1401 aa10.98□□□□□ -0.65
LYSMD3-203ENST00000500869 RRBP1Q9P2E9 1410 aaKnown RBP10.96□□□□□ -0.65
LYSMD3-203ENST00000500869 CLSPNQ9HAW4 1339 aa10.95□□□□□ -0.66
LYSMD3-203ENST00000500869 CFAP43Q8NDM7 1665 aa10.93□□□□□ -0.66
LYSMD3-203ENST00000500869 ARHGAP35Q9NRY4 1499 aa10.91□□□□□ -0.66
LYSMD3-203ENST00000500869 SCAF1Q9H7N4 1312 aaKnown RBP10.89□□□□□ -0.67
LYSMD3-203ENST00000500869 WDR97A6NE52 1622 aa10.89□□□□□ -0.67
LYSMD3-203ENST00000500869 CC2D2AQ9P2K1 1620 aa10.89□□□□□ -0.67
LYSMD3-203ENST00000500869 TIAM1Q13009 1591 aa10.88□□□□□ -0.67
LYSMD3-203ENST00000500869 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
LYSMD3-203ENST00000500869 CADPSQ9ULU8 1353 aa10.87□□□□□ -0.67
LYSMD3-203ENST00000500869 DNMBPQ6XZF7 1577 aa10.87□□□□□ -0.67
LYSMD3-203ENST00000500869 CUL7Q14999 1698 aa10.87□□□□□ -0.67
LYSMD3-203ENST00000500869 ZNF316A6NFI3 1004 aaPredicted RBP10.85□□□□□ -0.67
LYSMD3-203ENST00000500869 DIEXFQ68CQ4 756 aaKnown RBP10.85□□□□□ -0.67
LYSMD3-203ENST00000500869 ACIN1Q9UKV3 1341 aaKnown RBP10.85□□□□□ -0.67
LYSMD3-203ENST00000500869 CTTNBP2Q8WZ74 1663 aa10.84□□□□□ -0.67
LYSMD3-203ENST00000500869 EFCAB5A4FU69 1503 aa10.84□□□□□ -0.67
LYSMD3-203ENST00000500869 FGD5Q6ZNL6 1462 aa10.84□□□□□ -0.67
LYSMD3-203ENST00000500869 IGF1RP08069 1367 aa10.83□□□□□ -0.68
LYSMD3-203ENST00000500869 ABCA10Q8WWZ4 1543 aa10.83□□□□□ -0.68
LYSMD3-203ENST00000500869 DHX57Q6P158 1386 aaKnown RBP10.83□□□□□ -0.68
LYSMD3-203ENST00000500869 AQRO60306 1485 aaKnown RBP eCLIP10.82□□□□□ -0.682e-7■■■□□ 15.3
LYSMD3-203ENST00000500869 KIF21AQ7Z4S6 1674 aa10.79□□□□□ -0.68
LYSMD3-203ENST00000500869 LAMC3Q9Y6N6 1575 aa10.78□□□□□ -0.68
LYSMD3-203ENST00000500869 ABCA5Q8WWZ7 1642 aa10.77□□□□□ -0.68
LYSMD3-203ENST00000500869 PCF11O94913 1555 aaKnown RBP10.77□□□□□ -0.69
LYSMD3-203ENST00000500869 APLP2Q06481 763 aa10.77□□□□□ -0.69
LYSMD3-203ENST00000500869 LRRC9Q6ZRR7 1453 aa10.77□□□□□ -0.69
LYSMD3-203ENST00000500869 FYCO1Q9BQS8 1478 aa10.77□□□□□ -0.69
LYSMD3-203ENST00000500869 FANCD2Q9BXW9 1451 aa10.77□□□□□ -0.69
LYSMD3-203ENST00000500869 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms