RNA–Protein interactions for RNA: ENST00000497892.5

ERCC8-208, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 1 (best)

Gene ERCC8, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-208ENST00000497892 AEBP2Q6ZN18 517 aaPredicted RBP31.15■■■□□ 2.58
ERCC8-208ENST00000497892 CHIC1Q5VXU3 224 aa29.69■■■□□ 2.34
ERCC8-208ENST00000497892 NISCHQ9Y2I1 1504 aa27.4■■□□□ 1.98
ERCC8-208ENST00000497892 SENP3Q9H4L4 574 aaPredicted RBP26.55■■□□□ 1.84
ERCC8-208ENST00000497892 PHF23Q9BUL5 403 aaPredicted RBP26.21■■□□□ 1.79
ERCC8-208ENST00000497892 FOXD1Q16676 465 aa24.72■■□□□ 1.55
ERCC8-208ENST00000497892 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
ERCC8-208ENST00000497892 PLPPR3Q6T4P5 718 aa23.77■■□□□ 1.4
ERCC8-208ENST00000497892 ABCC9O60706 1549 aa23.74■■□□□ 1.39
ERCC8-208ENST00000497892 PPP6R1Q9UPN7 881 aa23.2■■□□□ 1.3
ERCC8-208ENST00000497892 ADRA2BP18089 450 aa23.12■■□□□ 1.29
ERCC8-208ENST00000497892 PIAS4Q8N2W9 510 aaPredicted RBP23.12■■□□□ 1.29
ERCC8-208ENST00000497892 MSH5O43196 834 aa23.1■■□□□ 1.29
ERCC8-208ENST00000497892 RB1CC1Q8TDY2 1594 aa22.91■■□□□ 1.26
ERCC8-208ENST00000497892 NACADO15069 1562 aa22.89■■□□□ 1.26
ERCC8-208ENST00000497892 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
ERCC8-208ENST00000497892 MYO15BQ96JP2 1530 aa22.79■■□□□ 1.24
ERCC8-208ENST00000497892 DCAF8L2P0C7V8 631 aa22.71■■□□□ 1.23
ERCC8-208ENST00000497892 DCAF1Q9Y4B6 1507 aa22.71■■□□□ 1.23
ERCC8-208ENST00000497892 UNC13AQ9UPW8 1703 aa22.44■■□□□ 1.18
ERCC8-208ENST00000497892 POTEDQ86YR6 584 aa22.35■■□□□ 1.17
ERCC8-208ENST00000497892 BICRAQ9NZM4 1560 aa22.22■■□□□ 1.15
ERCC8-208ENST00000497892 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
ERCC8-208ENST00000497892 PABPN1Q86U42 306 aaKnown RBP eCLIP22.13■■□□□ 1.13
ERCC8-208ENST00000497892 SHROOM4Q9ULL8 1493 aa22.03■■□□□ 1.12
ERCC8-208ENST00000497892 DNAJC5BQ9UF47 199 aa21.7■■□□□ 1.06
ERCC8-208ENST00000497892 EIF4G1Q04637 1599 aaKnown RBP21.63■■□□□ 1.05
ERCC8-208ENST00000497892 CC2D2AQ9P2K1 1620 aa21.52■■□□□ 1.04
ERCC8-208ENST00000497892 CECR2Q9BXF3 1484 aa21.34■■□□□ 1.01
ERCC8-208ENST00000497892 SMARCA4P51532 1647 aa21.28■■□□□ 1
ERCC8-208ENST00000497892 BAZ1AQ9NRL2 1556 aaPredicted RBP21.24■□□□□ 0.99
ERCC8-208ENST00000497892 MAPK8IP2Q13387 824 aaPredicted RBP21.2■□□□□ 0.98
ERCC8-208ENST00000497892 SCAF1Q9H7N4 1312 aaKnown RBP21.15■□□□□ 0.98
ERCC8-208ENST00000497892 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
ERCC8-208ENST00000497892 ATAD2BQ9ULI0 1458 aa21.11■□□□□ 0.97
ERCC8-208ENST00000497892 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
ERCC8-208ENST00000497892 NCAPD3P42695 1498 aa21.1■□□□□ 0.97
ERCC8-208ENST00000497892 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
ERCC8-208ENST00000497892 DMRT2Q9Y5R5 561 aa21.08■□□□□ 0.97
ERCC8-208ENST00000497892 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
ERCC8-208ENST00000497892 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
ERCC8-208ENST00000497892 WIZO95785 1651 aa20.89■□□□□ 0.94
ERCC8-208ENST00000497892 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
ERCC8-208ENST00000497892 PPP4R3CPQ6ZMV5 832 aa20.83■□□□□ 0.93
ERCC8-208ENST00000497892 TOP2AP11388 1531 aaKnown RBP20.69■□□□□ 0.9
ERCC8-208ENST00000497892 LAMC3Q9Y6N6 1575 aa20.57■□□□□ 0.88
ERCC8-208ENST00000497892 NESP48681 1621 aa20.56■□□□□ 0.88
ERCC8-208ENST00000497892 ERCC6Q03468 1493 aa20.46■□□□□ 0.87
ERCC8-208ENST00000497892 CADPSQ9ULU8 1353 aa20.45■□□□□ 0.86
ERCC8-208ENST00000497892 CNKSR2Q8WXI2 1034 aa20.42■□□□□ 0.86
ERCC8-208ENST00000497892 CCDC88BA6NC98 1476 aa20.4■□□□□ 0.86
ERCC8-208ENST00000497892 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
ERCC8-208ENST00000497892 CFTRP13569 1480 aa20.37■□□□□ 0.85
ERCC8-208ENST00000497892 PDS5BQ9NTI5 1447 aa20.37■□□□□ 0.85
ERCC8-208ENST00000497892 HOXD11P31277 338 aaPredicted RBP20.36■□□□□ 0.85
ERCC8-208ENST00000497892 THOC2Q8NI27 1593 aaKnown RBP20.32■□□□□ 0.84
ERCC8-208ENST00000497892 PRDM2Q13029 1718 aa20.32■□□□□ 0.84
ERCC8-208ENST00000497892 CUX2O14529 1486 aa20.26■□□□□ 0.83
ERCC8-208ENST00000497892 SUPT5HO00267 1087 aaKnown RBP20.26■□□□□ 0.83
ERCC8-208ENST00000497892 FANCD2Q9BXW9 1451 aa20.24■□□□□ 0.83
ERCC8-208ENST00000497892 RNF216Q9NWF9 866 aaPredicted RBP20.23■□□□□ 0.83
ERCC8-208ENST00000497892 CEP164Q9UPV0 1460 aa20.23■□□□□ 0.83
ERCC8-208ENST00000497892 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
ERCC8-208ENST00000497892 WDR62O43379 1518 aa20.16■□□□□ 0.82
ERCC8-208ENST00000497892 DCAF8L1A6NGE4 600 aa20.15■□□□□ 0.82
ERCC8-208ENST00000497892 NCBP3Q53F19 620 aaKnown RBP20.07■□□□□ 0.8
ERCC8-208ENST00000497892 URB2Q14146 1524 aaKnown RBP20.05■□□□□ 0.8
ERCC8-208ENST00000497892 TOPBP1Q92547 1522 aa19.94■□□□□ 0.78
ERCC8-208ENST00000497892 DNMBPQ6XZF7 1577 aa19.94■□□□□ 0.78
ERCC8-208ENST00000497892 ABCC8Q09428 1581 aa19.93■□□□□ 0.78
ERCC8-208ENST00000497892 CUX1P39880 1505 aa19.81■□□□□ 0.76
ERCC8-208ENST00000497892 IFT140Q96RY7 1462 aa19.79■□□□□ 0.76
ERCC8-208ENST00000497892 NPM3O75607 178 aaKnown RBP19.79■□□□□ 0.76
ERCC8-208ENST00000497892 POLA1P09884 1462 aaPredicted RBP19.77■□□□□ 0.76
ERCC8-208ENST00000497892 TARBP1Q13395 1621 aaKnown RBP19.75■□□□□ 0.75
ERCC8-208ENST00000497892 RNF39Q9H2S5 420 aa19.74■□□□□ 0.75
ERCC8-208ENST00000497892 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
ERCC8-208ENST00000497892 CACNB1Q02641 598 aaPredicted RBP19.72■□□□□ 0.75
ERCC8-208ENST00000497892 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
ERCC8-208ENST00000497892 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
ERCC8-208ENST00000497892 EIF4G3O43432 1585 aaKnown RBP19.68■□□□□ 0.74
ERCC8-208ENST00000497892 TOP2BQ02880 1626 aa19.67■□□□□ 0.74
ERCC8-208ENST00000497892 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
ERCC8-208ENST00000497892 SYNJ1O43426 1573 aa19.66■□□□□ 0.74
ERCC8-208ENST00000497892 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
ERCC8-208ENST00000497892 SOGA1O94964 1423 aa19.64■□□□□ 0.73
ERCC8-208ENST00000497892 WDR97A6NE52 1622 aa19.63■□□□□ 0.73
ERCC8-208ENST00000497892 AQRO60306 1485 aaKnown RBP eCLIP19.55■□□□□ 0.72
ERCC8-208ENST00000497892 ABCA10Q8WWZ4 1543 aa19.55■□□□□ 0.72
ERCC8-208ENST00000497892 DNAJC5Q9H3Z4 198 aa19.52■□□□□ 0.72
ERCC8-208ENST00000497892 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
ERCC8-208ENST00000497892 KCNA4P22459 653 aa19.51■□□□□ 0.71
ERCC8-208ENST00000497892 ABCA5Q8WWZ7 1642 aa19.51■□□□□ 0.71
ERCC8-208ENST00000497892 PBRM1Q86U86 1689 aa19.47■□□□□ 0.71
ERCC8-208ENST00000497892 C1QBPQ07021 282 aaKnown RBP19.45■□□□□ 0.7
ERCC8-208ENST00000497892 GRIN2BQ13224 1484 aa19.44■□□□□ 0.7
ERCC8-208ENST00000497892 GAPVD1Q14C86 1478 aa19.44■□□□□ 0.7
ERCC8-208ENST00000497892 CHD1O14646 1710 aa19.42■□□□□ 0.7
ERCC8-208ENST00000497892 SNAPC4Q5SXM2 1469 aa19.41■□□□□ 0.7
ERCC8-208ENST00000497892 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms