RNA–Protein interactions for RNA: ENST00000497069.2

PMF1-205, Transcript of polyamine modulated factor 1, humanhuman

TSL 3

Gene PMF1, Length 837 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-205ENST00000497069 NISCHQ9Y2I1 1504 aa37.62■■■■□ 3.61
PMF1-205ENST00000497069 CCDC180Q9P1Z9 1646 aa33.27■■■□□ 2.92
PMF1-205ENST00000497069 ABCC9O60706 1549 aa32.26■■■□□ 2.75
PMF1-205ENST00000497069 ZCCHC6Q5VYS8 1495 aaKnown RBP31.41■■■□□ 2.62
PMF1-205ENST00000497069 DCAF8L2P0C7V8 631 aa31.41■■■□□ 2.62
PMF1-205ENST00000497069 NACADO15069 1562 aa31.22■■■□□ 2.59
PMF1-205ENST00000497069 RB1CC1Q8TDY2 1594 aa31.18■■■□□ 2.58
PMF1-205ENST00000497069 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.58
PMF1-205ENST00000497069 MYO15BQ96JP2 1530 aa31.13■■■□□ 2.57
PMF1-205ENST00000497069 SCRIBQ14160 1630 aa30.42■■■□□ 2.46
PMF1-205ENST00000497069 UNC13AQ9UPW8 1703 aa30.36■■■□□ 2.45
PMF1-205ENST00000497069 PABPN1Q86U42 306 aaKnown RBP eCLIP30.22■■■□□ 2.43
PMF1-205ENST00000497069 BICRAQ9NZM4 1560 aa30.15■■■□□ 2.42
PMF1-205ENST00000497069 SHROOM4Q9ULL8 1493 aa30■■■□□ 2.39
PMF1-205ENST00000497069 EIF4G1Q04637 1599 aaKnown RBP29.37■■■□□ 2.29
PMF1-205ENST00000497069 CECR2Q9BXF3 1484 aa29.26■■■□□ 2.27
PMF1-205ENST00000497069 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
PMF1-205ENST00000497069 BAZ1AQ9NRL2 1556 aaPredicted RBP29.16■■■□□ 2.26
PMF1-205ENST00000497069 CC2D2AQ9P2K1 1620 aa29.15■■■□□ 2.26
PMF1-205ENST00000497069 SMARCA4P51532 1647 aa29.11■■■□□ 2.25
PMF1-205ENST00000497069 MROH2BQ7Z745 1585 aa29■■■□□ 2.23
PMF1-205ENST00000497069 SMARCA2P51531 1590 aa28.88■■■□□ 2.21
PMF1-205ENST00000497069 ATAD2BQ9ULI0 1458 aa28.87■■■□□ 2.21
PMF1-205ENST00000497069 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
PMF1-205ENST00000497069 NCAPD3P42695 1498 aa28.8■■■□□ 2.2
PMF1-205ENST00000497069 PEG3Q9GZU2 1588 aa28.79■■■□□ 2.2
PMF1-205ENST00000497069 BAZ1BQ9UIG0 1483 aaKnown RBP28.69■■■□□ 2.18
PMF1-205ENST00000497069 WIZO95785 1651 aa28.69■■■□□ 2.18
PMF1-205ENST00000497069 HMGXB3Q12766 1538 aa28.69■■■□□ 2.18
PMF1-205ENST00000497069 TOP2AP11388 1531 aaKnown RBP28.44■■■□□ 2.14
PMF1-205ENST00000497069 SUPT5HO00267 1087 aaKnown RBP28.44■■■□□ 2.14
PMF1-205ENST00000497069 CCDC88BA6NC98 1476 aa28.1■■■□□ 2.09
PMF1-205ENST00000497069 CADPSQ9ULU8 1353 aa28■■■□□ 2.07
PMF1-205ENST00000497069 LAMC3Q9Y6N6 1575 aa27.99■■■□□ 2.07
PMF1-205ENST00000497069 NESP48681 1621 aa27.99■■■□□ 2.07
PMF1-205ENST00000497069 CFTRP13569 1480 aa27.89■■■□□ 2.06
PMF1-205ENST00000497069 PDS5BQ9NTI5 1447 aa27.84■■■□□ 2.05
PMF1-205ENST00000497069 ERCC6Q03468 1493 aa27.83■■■□□ 2.04
PMF1-205ENST00000497069 FANCD2Q9BXW9 1451 aa27.69■■■□□ 2.02
PMF1-205ENST00000497069 PRDM2Q13029 1718 aa27.66■■■□□ 2.02
PMF1-205ENST00000497069 KIF21AQ7Z4S6 1674 aa27.65■■■□□ 2.02
PMF1-205ENST00000497069 CEP164Q9UPV0 1460 aa27.63■■■□□ 2.01
PMF1-205ENST00000497069 MRC2Q9UBG0 1479 aa27.5■■□□□ 1.99
PMF1-205ENST00000497069 THOC2Q8NI27 1593 aaKnown RBP27.46■■□□□ 1.99
PMF1-205ENST00000497069 WDR62O43379 1518 aa27.36■■□□□ 1.97
PMF1-205ENST00000497069 CUX2O14529 1486 aa27.35■■□□□ 1.97
PMF1-205ENST00000497069 URB2Q14146 1524 aaKnown RBP27.35■■□□□ 1.97
PMF1-205ENST00000497069 ABCC8Q09428 1581 aa27.32■■□□□ 1.96
PMF1-205ENST00000497069 DNMBPQ6XZF7 1577 aa27.26■■□□□ 1.96
PMF1-205ENST00000497069 TOPBP1Q92547 1522 aa27.26■■□□□ 1.96
PMF1-205ENST00000497069 WRNQ14191 1432 aaPredicted RBP eCLIP27.19■■□□□ 1.94
PMF1-205ENST00000497069 CUX1P39880 1505 aa27.17■■□□□ 1.94
PMF1-205ENST00000497069 POLA1P09884 1462 aaPredicted RBP27.06■■□□□ 1.92
PMF1-205ENST00000497069 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
PMF1-205ENST00000497069 SYNJ1O43426 1573 aa27.05■■□□□ 1.92
PMF1-205ENST00000497069 TOP2BQ02880 1626 aa27.05■■□□□ 1.92
PMF1-205ENST00000497069 IFT140Q96RY7 1462 aa27.03■■□□□ 1.92
PMF1-205ENST00000497069 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
PMF1-205ENST00000497069 SOGA1O94964 1423 aa26.99■■□□□ 1.91
PMF1-205ENST00000497069 RAD54L2Q9Y4B4 1467 aa26.94■■□□□ 1.9
PMF1-205ENST00000497069 TARBP1Q13395 1621 aaKnown RBP26.91■■□□□ 1.9
PMF1-205ENST00000497069 TRIM41Q8WV44 630 aa26.86■■□□□ 1.89
PMF1-205ENST00000497069 ZNF608Q9ULD9 1512 aaPredicted RBP26.84■■□□□ 1.89
PMF1-205ENST00000497069 ABCA10Q8WWZ4 1543 aa26.8■■□□□ 1.88
PMF1-205ENST00000497069 TDRD9Q8NDG6 1382 aaKnown RBP26.79■■□□□ 1.88
PMF1-205ENST00000497069 AQRO60306 1485 aaKnown RBP eCLIP26.76■■□□□ 1.879e-8■■■■■ 32
PMF1-205ENST00000497069 WDR97A6NE52 1622 aa26.76■■□□□ 1.87
PMF1-205ENST00000497069 EIF4G3O43432 1585 aaKnown RBP26.75■■□□□ 1.87
PMF1-205ENST00000497069 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
PMF1-205ENST00000497069 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
PMF1-205ENST00000497069 ABCA5Q8WWZ7 1642 aa26.64■■□□□ 1.85
PMF1-205ENST00000497069 GRIN2BQ13224 1484 aa26.63■■□□□ 1.85
PMF1-205ENST00000497069 KIF27Q86VH2 1401 aa26.61■■□□□ 1.85
PMF1-205ENST00000497069 PBRM1Q86U86 1689 aa26.54■■□□□ 1.84
PMF1-205ENST00000497069 SNAPC4Q5SXM2 1469 aa26.53■■□□□ 1.84
PMF1-205ENST00000497069 MAGI1Q96QZ7 1491 aaPredicted RBP26.5■■□□□ 1.83
PMF1-205ENST00000497069 ERICH3Q5RHP9 1530 aa26.49■■□□□ 1.83
PMF1-205ENST00000497069 FBLN2P98095 1184 aa26.45■■□□□ 1.82
PMF1-205ENST00000497069 CHMP7Q8WUX9 453 aaPredicted RBP26.42■■□□□ 1.82
PMF1-205ENST00000497069 IGF1RP08069 1367 aa26.42■■□□□ 1.82
PMF1-205ENST00000497069 RUSC2Q8N2Y8 1516 aa26.41■■□□□ 1.82
PMF1-205ENST00000497069 SYNJ2O15056 1496 aa26.4■■□□□ 1.82
PMF1-205ENST00000497069 FHAD1B1AJZ9 1412 aa26.39■■□□□ 1.81
PMF1-205ENST00000497069 ADAMTS12P58397 1594 aa26.37■■□□□ 1.81
PMF1-205ENST00000497069 EEA1Q15075 1411 aa26.35■■□□□ 1.81
PMF1-205ENST00000497069 CUL7Q14999 1698 aa26.33■■□□□ 1.81
PMF1-205ENST00000497069 CHD1O14646 1710 aa26.32■■□□□ 1.8
PMF1-205ENST00000497069 OSCARQ8IYS5 282 aa26.32■■□□□ 1.8
PMF1-205ENST00000497069 FAM9AQ8IZU1 332 aaPredicted RBP26.3■■□□□ 1.8
PMF1-205ENST00000497069 CARMIL1Q5VZK9 1371 aa26.3■■□□□ 1.8
PMF1-205ENST00000497069 CSRNP3Q8WYN3 585 aa26.27■■□□□ 1.8
PMF1-205ENST00000497069 GRIN2AQ12879 1464 aa26.27■■□□□ 1.8
PMF1-205ENST00000497069 RAPGEF2Q9Y4G8 1499 aa26.17■■□□□ 1.78
PMF1-205ENST00000497069 PRXQ9BXM0 1461 aa26.14■■□□□ 1.78
PMF1-205ENST00000497069 NUP160Q12769 1436 aa26.11■■□□□ 1.77
PMF1-205ENST00000497069 CEP170Q5SW79 1584 aa26.1■■□□□ 1.77
PMF1-205ENST00000497069 DNAJC5Q9H3Z4 198 aa26.07■■□□□ 1.76
PMF1-205ENST00000497069 CLASP1Q7Z460 1538 aa26.05■■□□□ 1.76
PMF1-205ENST00000497069 KIF21BO75037 1637 aa25.99■■□□□ 1.75
PMF1-205ENST00000497069 KIAA0586Q9BVV6 1533 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms