RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 NISCHQ9Y2I1 1504 aa28.31■■■□□ 2.12
GARNL3-220ENST00000496711 CCDC180Q9P1Z9 1646 aa24.49■■□□□ 1.51
GARNL3-220ENST00000496711 ZCCHC6Q5VYS8 1495 aaKnown RBP23.92■■□□□ 1.42
GARNL3-220ENST00000496711 SHROOM4Q9ULL8 1493 aa23.52■■□□□ 1.36
GARNL3-220ENST00000496711 DCAF1Q9Y4B6 1507 aa23.38■■□□□ 1.33
GARNL3-220ENST00000496711 DCAF8L2P0C7V8 631 aa23.16■■□□□ 1.3
GARNL3-220ENST00000496711 MYO15BQ96JP2 1530 aa22.88■■□□□ 1.25
GARNL3-220ENST00000496711 SUPT5HO00267 1087 aaKnown RBP22.86■■□□□ 1.25
GARNL3-220ENST00000496711 SCRIBQ14160 1630 aa22.63■■□□□ 1.21
GARNL3-220ENST00000496711 ABCC9O60706 1549 aa22.63■■□□□ 1.21
GARNL3-220ENST00000496711 NACADO15069 1562 aa22.61■■□□□ 1.21
GARNL3-220ENST00000496711 RB1CC1Q8TDY2 1594 aa22.32■■□□□ 1.16
GARNL3-220ENST00000496711 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
GARNL3-220ENST00000496711 CHIC1Q5VXU3 224 aa22.14■■□□□ 1.13
GARNL3-220ENST00000496711 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.12
GARNL3-220ENST00000496711 CECR2Q9BXF3 1484 aa21.96■■□□□ 1.11
GARNL3-220ENST00000496711 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
GARNL3-220ENST00000496711 BAZ1AQ9NRL2 1556 aaPredicted RBP21.83■■□□□ 1.08
GARNL3-220ENST00000496711 WIZO95785 1651 aa21.82■■□□□ 1.08
GARNL3-220ENST00000496711 SMARCA4P51532 1647 aa21.7■■□□□ 1.06
GARNL3-220ENST00000496711 BICRAQ9NZM4 1560 aa21.66■■□□□ 1.06
GARNL3-220ENST00000496711 TOP2AP11388 1531 aaKnown RBP21.56■■□□□ 1.04
GARNL3-220ENST00000496711 EIF4G1Q04637 1599 aaKnown RBP21.49■■□□□ 1.03
GARNL3-220ENST00000496711 TRIM41Q8WV44 630 aa21.42■■□□□ 1.02
GARNL3-220ENST00000496711 SMARCA2P51531 1590 aa21.4■■□□□ 1.02
GARNL3-220ENST00000496711 PABPN1Q86U42 306 aaKnown RBP eCLIP21.4■■□□□ 1.02
GARNL3-220ENST00000496711 PEG3Q9GZU2 1588 aa21.37■■□□□ 1.01
GARNL3-220ENST00000496711 LOC105371045A0A1W2PR82 267 aa21.33■■□□□ 1.01
GARNL3-220ENST00000496711 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
GARNL3-220ENST00000496711 ATAD2BQ9ULI0 1458 aa21.14■□□□□ 0.97
GARNL3-220ENST00000496711 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
GARNL3-220ENST00000496711 FAM9AQ8IZU1 332 aaPredicted RBP21.09■□□□□ 0.97
GARNL3-220ENST00000496711 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.96
GARNL3-220ENST00000496711 PCGF6Q9BYE7 350 aa20.96■□□□□ 0.95
GARNL3-220ENST00000496711 HMGXB3Q12766 1538 aa20.91■□□□□ 0.94
GARNL3-220ENST00000496711 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
GARNL3-220ENST00000496711 NCAPD3P42695 1498 aa20.83■□□□□ 0.92
GARNL3-220ENST00000496711 EEA1Q15075 1411 aa20.82■□□□□ 0.92
GARNL3-220ENST00000496711 HRCP23327 699 aa20.81■□□□□ 0.92
GARNL3-220ENST00000496711 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
GARNL3-220ENST00000496711 EHMT2Q96KQ7 1210 aa20.8■□□□□ 0.92
GARNL3-220ENST00000496711 TRIM26Q12899 539 aaPredicted RBP20.79■□□□□ 0.92
GARNL3-220ENST00000496711 SOGA1O94964 1423 aa20.78■□□□□ 0.92
GARNL3-220ENST00000496711 RUSC2Q8N2Y8 1516 aa20.69■□□□□ 0.9
GARNL3-220ENST00000496711 TOP2BQ02880 1626 aa20.66■□□□□ 0.9
GARNL3-220ENST00000496711 BIVM-ERCC5R4GMW8 1640 aa20.66■□□□□ 0.9
GARNL3-220ENST00000496711 PRDM2Q13029 1718 aa20.64■□□□□ 0.9
GARNL3-220ENST00000496711 CSRNP3Q8WYN3 585 aa20.62■□□□□ 0.89
GARNL3-220ENST00000496711 GOLGA3Q08378 1498 aa20.61■□□□□ 0.89
GARNL3-220ENST00000496711 KIF21BO75037 1637 aa20.61■□□□□ 0.89
GARNL3-220ENST00000496711 TNIKQ9UKE5 1360 aa20.6■□□□□ 0.89
GARNL3-220ENST00000496711 CEP162Q5TB80 1403 aa20.58■□□□□ 0.88
GARNL3-220ENST00000496711 CFTRP13569 1480 aa20.54■□□□□ 0.88
GARNL3-220ENST00000496711 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
GARNL3-220ENST00000496711 CC2D2AQ9P2K1 1620 aa20.52■□□□□ 0.88
GARNL3-220ENST00000496711 CUX1P39880 1505 aa20.46■□□□□ 0.87
GARNL3-220ENST00000496711 UBTFP17480 764 aaKnown RBP20.43■□□□□ 0.86
GARNL3-220ENST00000496711 RAPGEF2Q9Y4G8 1499 aa20.34■□□□□ 0.85
GARNL3-220ENST00000496711 ERICH3Q5RHP9 1530 aa20.34■□□□□ 0.85
GARNL3-220ENST00000496711 CADPSQ9ULU8 1353 aa20.33■□□□□ 0.84
GARNL3-220ENST00000496711 PPARGC1BQ86YN6 1023 aaKnown RBP20.32■□□□□ 0.84
GARNL3-220ENST00000496711 CLIP1P30622 1438 aa20.28■□□□□ 0.84
GARNL3-220ENST00000496711 PRXQ9BXM0 1461 aa20.27■□□□□ 0.83
GARNL3-220ENST00000496711 KIF27Q86VH2 1401 aa20.26■□□□□ 0.83
GARNL3-220ENST00000496711 ZEB1P37275 1124 aaPredicted RBP20.24■□□□□ 0.83
GARNL3-220ENST00000496711 VPS8Q8N3P4 1428 aa20.19■□□□□ 0.82
GARNL3-220ENST00000496711 FANCD2Q9BXW9 1451 aa20.16■□□□□ 0.82
GARNL3-220ENST00000496711 FGD5Q6ZNL6 1462 aa20.15■□□□□ 0.82
GARNL3-220ENST00000496711 DNMBPQ6XZF7 1577 aa20.11■□□□□ 0.81
GARNL3-220ENST00000496711 CUX2O14529 1486 aa20.11■□□□□ 0.81
GARNL3-220ENST00000496711 LAMC3Q9Y6N6 1575 aa20.09■□□□□ 0.81
GARNL3-220ENST00000496711 TTBK1Q5TCY1 1321 aaPredicted RBP20.08■□□□□ 0.81
GARNL3-220ENST00000496711 NESP48681 1621 aa20.05■□□□□ 0.8
GARNL3-220ENST00000496711 ARAP1Q96P48 1450 aa20.04■□□□□ 0.8
GARNL3-220ENST00000496711 TOPBP1Q92547 1522 aa20.02■□□□□ 0.8
GARNL3-220ENST00000496711 IGF1RP08069 1367 aa19.98■□□□□ 0.79
GARNL3-220ENST00000496711 RANGAP1P46060 587 aaPredicted RBP19.98■□□□□ 0.79
GARNL3-220ENST00000496711 POLA1P09884 1462 aaPredicted RBP19.96■□□□□ 0.79
GARNL3-220ENST00000496711 ABCA10Q8WWZ4 1543 aa19.96■□□□□ 0.79
GARNL3-220ENST00000496711 WDR97A6NE52 1622 aa19.95■□□□□ 0.78
GARNL3-220ENST00000496711 APLP2Q06481 763 aa19.95■□□□□ 0.78
GARNL3-220ENST00000496711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.92■□□□□ 0.78
GARNL3-220ENST00000496711 ARHGAP35Q9NRY4 1499 aa19.91■□□□□ 0.78
GARNL3-220ENST00000496711 CARMIL1Q5VZK9 1371 aa19.91■□□□□ 0.78
GARNL3-220ENST00000496711 CCER1Q8TC90 406 aaPredicted RBP19.9■□□□□ 0.78
GARNL3-220ENST00000496711 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
GARNL3-220ENST00000496711 CUL7Q14999 1698 aa19.9■□□□□ 0.78
GARNL3-220ENST00000496711 KIF21AQ7Z4S6 1674 aa19.9■□□□□ 0.78
GARNL3-220ENST00000496711 URB2Q14146 1524 aaKnown RBP19.89■□□□□ 0.78
GARNL3-220ENST00000496711 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
GARNL3-220ENST00000496711 CTTNBP2Q8WZ74 1663 aa19.83■□□□□ 0.76
GARNL3-220ENST00000496711 ABCA5Q8WWZ7 1642 aa19.82■□□□□ 0.76
GARNL3-220ENST00000496711 DNAJC5BQ9UF47 199 aa19.74■□□□□ 0.75
GARNL3-220ENST00000496711 TIAM1Q13009 1591 aa19.72■□□□□ 0.75
GARNL3-220ENST00000496711 EFCAB5A4FU69 1503 aa19.72■□□□□ 0.75
GARNL3-220ENST00000496711 MAP3K1Q13233 1512 aa19.72■□□□□ 0.75
GARNL3-220ENST00000496711 CFAP43Q8NDM7 1665 aa19.71■□□□□ 0.75
GARNL3-220ENST00000496711 TARBP1Q13395 1621 aaKnown RBP19.7■□□□□ 0.74
GARNL3-220ENST00000496711 HNRNPUL2Q1KMD3 747 aaKnown RBP19.69■□□□□ 0.74
GARNL3-220ENST00000496711 KANK4Q5T7N3 995 aaPredicted RBP19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms