RNA–Protein interactions for RNA: ENST00000496466.1

UBXN11-216, Transcript of UBX domain protein 11, humanhuman

TSL 2

Gene UBXN11, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN11-216ENST00000496466 NISCHQ9Y2I1 1504 aa31.92■■■□□ 2.7
UBXN11-216ENST00000496466 CCDC180Q9P1Z9 1646 aa27.4■■□□□ 1.98
UBXN11-216ENST00000496466 ZCCHC6Q5VYS8 1495 aaKnown RBP26.92■■□□□ 1.9
UBXN11-216ENST00000496466 SHROOM4Q9ULL8 1493 aa26.75■■□□□ 1.87
UBXN11-216ENST00000496466 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
UBXN11-216ENST00000496466 DCAF1Q9Y4B6 1507 aa26.24■■□□□ 1.79
UBXN11-216ENST00000496466 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
UBXN11-216ENST00000496466 ABCC9O60706 1549 aa25.69■■□□□ 1.7
UBXN11-216ENST00000496466 MYO15BQ96JP2 1530 aa25.68■■□□□ 1.7
UBXN11-216ENST00000496466 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
UBXN11-216ENST00000496466 NACADO15069 1562 aa25.43■■□□□ 1.66
UBXN11-216ENST00000496466 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
UBXN11-216ENST00000496466 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
UBXN11-216ENST00000496466 RSF1Q96T23 1441 aaPredicted RBP25.06■■□□□ 1.6
UBXN11-216ENST00000496466 CECR2Q9BXF3 1484 aa24.9■■□□□ 1.58
UBXN11-216ENST00000496466 MROH2BQ7Z745 1585 aa24.77■■□□□ 1.56
UBXN11-216ENST00000496466 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
UBXN11-216ENST00000496466 WIZO95785 1651 aa24.6■■□□□ 1.53
UBXN11-216ENST00000496466 BAZ1AQ9NRL2 1556 aaPredicted RBP24.55■■□□□ 1.52
UBXN11-216ENST00000496466 LOC105371045A0A1W2PR82 267 aa24.46■■□□□ 1.51
UBXN11-216ENST00000496466 PABPN1Q86U42 306 aaKnown RBP eCLIP24.45■■□□□ 1.519e-7■■■□□ 16.4
UBXN11-216ENST00000496466 BICRAQ9NZM4 1560 aa24.43■■□□□ 1.5
UBXN11-216ENST00000496466 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
UBXN11-216ENST00000496466 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
UBXN11-216ENST00000496466 PCGF6Q9BYE7 350 aa24.29■■□□□ 1.48
UBXN11-216ENST00000496466 HRCP23327 699 aa24.27■■□□□ 1.48
UBXN11-216ENST00000496466 TOP2AP11388 1531 aaKnown RBP24.25■■□□□ 1.47
UBXN11-216ENST00000496466 CCDC88BA6NC98 1476 aa24.11■■□□□ 1.45
UBXN11-216ENST00000496466 EIF4G1Q04637 1599 aaKnown RBP24.1■■□□□ 1.45
UBXN11-216ENST00000496466 SMARCA2P51531 1590 aa24.09■■□□□ 1.45
UBXN11-216ENST00000496466 FAM9AQ8IZU1 332 aaPredicted RBP24.04■■□□□ 1.44
UBXN11-216ENST00000496466 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
UBXN11-216ENST00000496466 TRIM26Q12899 539 aaPredicted RBP23.93■■□□□ 1.42
UBXN11-216ENST00000496466 ATAD2BQ9ULI0 1458 aa23.89■■□□□ 1.42
UBXN11-216ENST00000496466 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
UBXN11-216ENST00000496466 EHMT2Q96KQ7 1210 aa23.8■■□□□ 1.4
UBXN11-216ENST00000496466 BAZ1BQ9UIG0 1483 aaKnown RBP23.79■■□□□ 1.4
UBXN11-216ENST00000496466 PPARGC1BQ86YN6 1023 aaKnown RBP23.71■■□□□ 1.39
UBXN11-216ENST00000496466 SOGA1O94964 1423 aa23.55■■□□□ 1.36
UBXN11-216ENST00000496466 WRNQ14191 1432 aaPredicted RBP eCLIP23.55■■□□□ 1.36
UBXN11-216ENST00000496466 NCAPD3P42695 1498 aa23.53■■□□□ 1.36
UBXN11-216ENST00000496466 HMGXB3Q12766 1538 aa23.49■■□□□ 1.35
UBXN11-216ENST00000496466 RUSC2Q8N2Y8 1516 aa23.46■■□□□ 1.35
UBXN11-216ENST00000496466 SYNJ1O43426 1573 aa23.45■■□□□ 1.34
UBXN11-216ENST00000496466 EEA1Q15075 1411 aa23.39■■□□□ 1.34
UBXN11-216ENST00000496466 CSRNP3Q8WYN3 585 aa23.39■■□□□ 1.33
UBXN11-216ENST00000496466 ZEB1P37275 1124 aaPredicted RBP23.38■■□□□ 1.33
UBXN11-216ENST00000496466 TNIKQ9UKE5 1360 aa23.24■■□□□ 1.31
UBXN11-216ENST00000496466 CEP162Q5TB80 1403 aa23.23■■□□□ 1.31
UBXN11-216ENST00000496466 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
UBXN11-216ENST00000496466 UBTFP17480 764 aaKnown RBP23.21■■□□□ 1.31
UBXN11-216ENST00000496466 CFTRP13569 1480 aa23.2■■□□□ 1.3
UBXN11-216ENST00000496466 GOLGA3Q08378 1498 aa23.19■■□□□ 1.3
UBXN11-216ENST00000496466 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
UBXN11-216ENST00000496466 BIVM-ERCC5R4GMW8 1640 aa23.16■■□□□ 1.3
UBXN11-216ENST00000496466 CEP164Q9UPV0 1460 aa23.12■■□□□ 1.29
UBXN11-216ENST00000496466 CUX1P39880 1505 aa23.1■■□□□ 1.29
UBXN11-216ENST00000496466 KIF21BO75037 1637 aa23.1■■□□□ 1.29
UBXN11-216ENST00000496466 CADPSQ9ULU8 1353 aa23.03■■□□□ 1.28
UBXN11-216ENST00000496466 RAPGEF2Q9Y4G8 1499 aa23.01■■□□□ 1.27
UBXN11-216ENST00000496466 PRDM2Q13029 1718 aa22.99■■□□□ 1.27
UBXN11-216ENST00000496466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.94■■□□□ 1.26
UBXN11-216ENST00000496466 TTBK1Q5TCY1 1321 aaPredicted RBP22.92■■□□□ 1.26
UBXN11-216ENST00000496466 CLIP1P30622 1438 aa22.9■■□□□ 1.26
UBXN11-216ENST00000496466 CCER1Q8TC90 406 aaPredicted RBP22.88■■□□□ 1.25
UBXN11-216ENST00000496466 PRXQ9BXM0 1461 aa22.87■■□□□ 1.25
UBXN11-216ENST00000496466 KIF27Q86VH2 1401 aa22.87■■□□□ 1.25
UBXN11-216ENST00000496466 RANGAP1P46060 587 aaPredicted RBP22.83■■□□□ 1.25
UBXN11-216ENST00000496466 ERICH3Q5RHP9 1530 aa22.82■■□□□ 1.24
UBXN11-216ENST00000496466 FANCD2Q9BXW9 1451 aa22.79■■□□□ 1.24
UBXN11-216ENST00000496466 NESP48681 1621 aa22.76■■□□□ 1.23
UBXN11-216ENST00000496466 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
UBXN11-216ENST00000496466 VPS8Q8N3P4 1428 aa22.74■■□□□ 1.23
UBXN11-216ENST00000496466 CUX2O14529 1486 aa22.74■■□□□ 1.23
UBXN11-216ENST00000496466 DNAJC5BQ9UF47 199 aa22.67■■□□□ 1.22
UBXN11-216ENST00000496466 IGF1RP08069 1367 aa22.67■■□□□ 1.22
UBXN11-216ENST00000496466 PELP1Q8IZL8 1130 aaKnown RBP22.63■■□□□ 1.21
UBXN11-216ENST00000496466 DNMBPQ6XZF7 1577 aa22.62■■□□□ 1.21
UBXN11-216ENST00000496466 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
UBXN11-216ENST00000496466 TOPBP1Q92547 1522 aa22.6■■□□□ 1.21
UBXN11-216ENST00000496466 LAMC3Q9Y6N6 1575 aa22.59■■□□□ 1.21
UBXN11-216ENST00000496466 APLP2Q06481 763 aa22.58■■□□□ 1.21
UBXN11-216ENST00000496466 RAD54L2Q9Y4B4 1467 aa22.57■■□□□ 1.2
UBXN11-216ENST00000496466 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
UBXN11-216ENST00000496466 POLA1P09884 1462 aaPredicted RBP22.55■■□□□ 1.2
UBXN11-216ENST00000496466 URB2Q14146 1524 aaKnown RBP22.5■■□□□ 1.19
UBXN11-216ENST00000496466 ABCA10Q8WWZ4 1543 aa22.5■■□□□ 1.19
UBXN11-216ENST00000496466 HNRNPUL2Q1KMD3 747 aaKnown RBP22.49■■□□□ 1.19
UBXN11-216ENST00000496466 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
UBXN11-216ENST00000496466 PDS5BQ9NTI5 1447 aa22.45■■□□□ 1.18
UBXN11-216ENST00000496466 KANK4Q5T7N3 995 aaPredicted RBP22.39■■□□□ 1.17
UBXN11-216ENST00000496466 DIEXFQ68CQ4 756 aaKnown RBP22.37■■□□□ 1.17
UBXN11-216ENST00000496466 KIF21AQ7Z4S6 1674 aa22.37■■□□□ 1.17
UBXN11-216ENST00000496466 WDR97A6NE52 1622 aa22.33■■□□□ 1.17
UBXN11-216ENST00000496466 TDRD9Q8NDG6 1382 aaKnown RBP22.32■■□□□ 1.16
UBXN11-216ENST00000496466 CUL7Q14999 1698 aa22.29■■□□□ 1.16
UBXN11-216ENST00000496466 ZNF316A6NFI3 1004 aaPredicted RBP22.28■■□□□ 1.16
UBXN11-216ENST00000496466 ABCA5Q8WWZ7 1642 aa22.25■■□□□ 1.15
UBXN11-216ENST00000496466 P3H3Q8IVL6 736 aa22.24■■□□□ 1.15
UBXN11-216ENST00000496466 SCAF1Q9H7N4 1312 aaKnown RBP22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms