RNA–Protein interactions for RNA: ENST00000496026.1

HDAC9-226, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 860 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-226ENST00000496026 NISCHQ9Y2I1 1504 aa35.08■■■■□ 3.21
HDAC9-226ENST00000496026 CCDC180Q9P1Z9 1646 aa30.98■■■□□ 2.55
HDAC9-226ENST00000496026 ABCC9O60706 1549 aa30.11■■■□□ 2.41
HDAC9-226ENST00000496026 DCAF8L2P0C7V8 631 aa29.32■■■□□ 2.28
HDAC9-226ENST00000496026 ZCCHC6Q5VYS8 1495 aaKnown RBP29.28■■■□□ 2.28
HDAC9-226ENST00000496026 NACADO15069 1562 aa29.1■■■□□ 2.25
HDAC9-226ENST00000496026 RB1CC1Q8TDY2 1594 aa29.07■■■□□ 2.24
HDAC9-226ENST00000496026 DCAF1Q9Y4B6 1507 aa29.01■■■□□ 2.23
HDAC9-226ENST00000496026 MYO15BQ96JP2 1530 aa29■■■□□ 2.23
HDAC9-226ENST00000496026 SCRIBQ14160 1630 aa28.36■■■□□ 2.13
HDAC9-226ENST00000496026 UNC13AQ9UPW8 1703 aa28.31■■■□□ 2.12
HDAC9-226ENST00000496026 PABPN1Q86U42 306 aaKnown RBP eCLIP28.23■■■□□ 2.11
HDAC9-226ENST00000496026 BICRAQ9NZM4 1560 aa28.14■■■□□ 2.1
HDAC9-226ENST00000496026 SHROOM4Q9ULL8 1493 aa28.01■■■□□ 2.07
HDAC9-226ENST00000496026 EIF4G1Q04637 1599 aaKnown RBP27.39■■□□□ 1.98
HDAC9-226ENST00000496026 DNAJC5BQ9UF47 199 aa27.32■■□□□ 1.96
HDAC9-226ENST00000496026 CECR2Q9BXF3 1484 aa27.3■■□□□ 1.96
HDAC9-226ENST00000496026 CC2D2AQ9P2K1 1620 aa27.2■■□□□ 1.95
HDAC9-226ENST00000496026 BAZ1AQ9NRL2 1556 aaPredicted RBP27.18■■□□□ 1.94
HDAC9-226ENST00000496026 SMARCA4P51532 1647 aa27.13■■□□□ 1.93
HDAC9-226ENST00000496026 MROH2BQ7Z745 1585 aa27.05■■□□□ 1.92
HDAC9-226ENST00000496026 ATAD2BQ9ULI0 1458 aa26.93■■□□□ 1.9
HDAC9-226ENST00000496026 SMARCA2P51531 1590 aa26.92■■□□□ 1.9
HDAC9-226ENST00000496026 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
HDAC9-226ENST00000496026 NCAPD3P42695 1498 aa26.86■■□□□ 1.89
HDAC9-226ENST00000496026 PEG3Q9GZU2 1588 aa26.84■■□□□ 1.89
HDAC9-226ENST00000496026 WIZO95785 1651 aa26.76■■□□□ 1.87
HDAC9-226ENST00000496026 BAZ1BQ9UIG0 1483 aaKnown RBP26.75■■□□□ 1.87
HDAC9-226ENST00000496026 HMGXB3Q12766 1538 aa26.74■■□□□ 1.87
HDAC9-226ENST00000496026 SUPT5HO00267 1087 aaKnown RBP26.53■■□□□ 1.84
HDAC9-226ENST00000496026 TOP2AP11388 1531 aaKnown RBP26.5■■□□□ 1.83
HDAC9-226ENST00000496026 CCDC88BA6NC98 1476 aa26.21■■□□□ 1.79
HDAC9-226ENST00000496026 CADPSQ9ULU8 1353 aa26.13■■□□□ 1.77
HDAC9-226ENST00000496026 NESP48681 1621 aa26.13■■□□□ 1.77
HDAC9-226ENST00000496026 LAMC3Q9Y6N6 1575 aa26.09■■□□□ 1.77
HDAC9-226ENST00000496026 CFTRP13569 1480 aa26.02■■□□□ 1.76
HDAC9-226ENST00000496026 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
HDAC9-226ENST00000496026 PDS5BQ9NTI5 1447 aa25.96■■□□□ 1.75
HDAC9-226ENST00000496026 FANCD2Q9BXW9 1451 aa25.83■■□□□ 1.73
HDAC9-226ENST00000496026 KIF21AQ7Z4S6 1674 aa25.77■■□□□ 1.72
HDAC9-226ENST00000496026 CEP164Q9UPV0 1460 aa25.77■■□□□ 1.72
HDAC9-226ENST00000496026 PRDM2Q13029 1718 aa25.75■■□□□ 1.71
HDAC9-226ENST00000496026 MRC2Q9UBG0 1479 aa25.65■■□□□ 1.7
HDAC9-226ENST00000496026 THOC2Q8NI27 1593 aaKnown RBP25.61■■□□□ 1.69
HDAC9-226ENST00000496026 URB2Q14146 1524 aaKnown RBP25.53■■□□□ 1.68
HDAC9-226ENST00000496026 WDR62O43379 1518 aa25.52■■□□□ 1.68
HDAC9-226ENST00000496026 CUX2O14529 1486 aa25.51■■□□□ 1.67
HDAC9-226ENST00000496026 ABCC8Q09428 1581 aa25.46■■□□□ 1.67
HDAC9-226ENST00000496026 TOPBP1Q92547 1522 aa25.43■■□□□ 1.66
HDAC9-226ENST00000496026 DNMBPQ6XZF7 1577 aa25.42■■□□□ 1.66
HDAC9-226ENST00000496026 CUX1P39880 1505 aa25.36■■□□□ 1.65
HDAC9-226ENST00000496026 WRNQ14191 1432 aaPredicted RBP eCLIP25.35■■□□□ 1.65
HDAC9-226ENST00000496026 POLA1P09884 1462 aaPredicted RBP25.23■■□□□ 1.63
HDAC9-226ENST00000496026 FGD5Q6ZNL6 1462 aa25.23■■□□□ 1.63
HDAC9-226ENST00000496026 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
HDAC9-226ENST00000496026 TOP2BQ02880 1626 aa25.21■■□□□ 1.63
HDAC9-226ENST00000496026 IFT140Q96RY7 1462 aa25.21■■□□□ 1.63
HDAC9-226ENST00000496026 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
HDAC9-226ENST00000496026 SOGA1O94964 1423 aa25.18■■□□□ 1.62
HDAC9-226ENST00000496026 RAD54L2Q9Y4B4 1467 aa25.15■■□□□ 1.62
HDAC9-226ENST00000496026 TARBP1Q13395 1621 aaKnown RBP25.09■■□□□ 1.61
HDAC9-226ENST00000496026 ZNF608Q9ULD9 1512 aaPredicted RBP25.06■■□□□ 1.6
HDAC9-226ENST00000496026 TRIM41Q8WV44 630 aa25.03■■□□□ 1.6
HDAC9-226ENST00000496026 TDRD9Q8NDG6 1382 aaKnown RBP25■■□□□ 1.59
HDAC9-226ENST00000496026 ABCA10Q8WWZ4 1543 aa24.99■■□□□ 1.59
HDAC9-226ENST00000496026 AQRO60306 1485 aaKnown RBP eCLIP24.97■■□□□ 1.59
HDAC9-226ENST00000496026 EIF4G3O43432 1585 aaKnown RBP24.94■■□□□ 1.58
HDAC9-226ENST00000496026 WDR97A6NE52 1622 aa24.94■■□□□ 1.58
HDAC9-226ENST00000496026 CHIC1Q5VXU3 224 aa24.9■■□□□ 1.58
HDAC9-226ENST00000496026 GAPVD1Q14C86 1478 aa24.88■■□□□ 1.57
HDAC9-226ENST00000496026 GRIN2BQ13224 1484 aa24.83■■□□□ 1.56
HDAC9-226ENST00000496026 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.56
HDAC9-226ENST00000496026 KIF27Q86VH2 1401 aa24.8■■□□□ 1.56
HDAC9-226ENST00000496026 SNAPC4Q5SXM2 1469 aa24.76■■□□□ 1.55
HDAC9-226ENST00000496026 PBRM1Q86U86 1689 aa24.74■■□□□ 1.55
HDAC9-226ENST00000496026 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
HDAC9-226ENST00000496026 ERICH3Q5RHP9 1530 aa24.7■■□□□ 1.54
HDAC9-226ENST00000496026 FBLN2P98095 1184 aa24.69■■□□□ 1.54
HDAC9-226ENST00000496026 RUSC2Q8N2Y8 1516 aa24.66■■□□□ 1.54
HDAC9-226ENST00000496026 CHMP7Q8WUX9 453 aaPredicted RBP24.65■■□□□ 1.54
HDAC9-226ENST00000496026 IGF1RP08069 1367 aa24.65■■□□□ 1.54
HDAC9-226ENST00000496026 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
HDAC9-226ENST00000496026 FHAD1B1AJZ9 1412 aa24.61■■□□□ 1.53
HDAC9-226ENST00000496026 ADAMTS12P58397 1594 aa24.59■■□□□ 1.53
HDAC9-226ENST00000496026 OSCARQ8IYS5 282 aa24.57■■□□□ 1.52
HDAC9-226ENST00000496026 CHD1O14646 1710 aa24.54■■□□□ 1.52
HDAC9-226ENST00000496026 EEA1Q15075 1411 aa24.53■■□□□ 1.52
HDAC9-226ENST00000496026 FAM9AQ8IZU1 332 aaPredicted RBP24.53■■□□□ 1.52
HDAC9-226ENST00000496026 CARMIL1Q5VZK9 1371 aa24.53■■□□□ 1.52
HDAC9-226ENST00000496026 CUL7Q14999 1698 aa24.52■■□□□ 1.52
HDAC9-226ENST00000496026 GRIN2AQ12879 1464 aa24.5■■□□□ 1.51
HDAC9-226ENST00000496026 CSRNP3Q8WYN3 585 aa24.49■■□□□ 1.51
HDAC9-226ENST00000496026 RAPGEF2Q9Y4G8 1499 aa24.41■■□□□ 1.5
HDAC9-226ENST00000496026 DNAJC5Q9H3Z4 198 aa24.37■■□□□ 1.49
HDAC9-226ENST00000496026 PRXQ9BXM0 1461 aa24.37■■□□□ 1.49
HDAC9-226ENST00000496026 NUP160Q12769 1436 aa24.36■■□□□ 1.49
HDAC9-226ENST00000496026 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
HDAC9-226ENST00000496026 CLASP1Q7Z460 1538 aa24.3■■□□□ 1.48
HDAC9-226ENST00000496026 KIAA0586Q9BVV6 1533 aa24.23■■□□□ 1.47
HDAC9-226ENST00000496026 EHMT2Q96KQ7 1210 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms