RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 NISCHQ9Y2I1 1504 aa46.72■■■■■ 5.07
HDAC4-212ENST00000495497 CCDC180Q9P1Z9 1646 aa41.3■■■■■ 4.2
HDAC4-212ENST00000495497 ABCC9O60706 1549 aa40.39■■■■■ 4.06
HDAC4-212ENST00000495497 DCAF8L2P0C7V8 631 aa39.11■■■■□ 3.85
HDAC4-212ENST00000495497 ZCCHC6Q5VYS8 1495 aaKnown RBP38.95■■■■□ 3.83
HDAC4-212ENST00000495497 NACADO15069 1562 aa38.82■■■■□ 3.81
HDAC4-212ENST00000495497 RB1CC1Q8TDY2 1594 aa38.82■■■■□ 3.81
HDAC4-212ENST00000495497 MYO15BQ96JP2 1530 aa38.63■■■■□ 3.77
HDAC4-212ENST00000495497 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
HDAC4-212ENST00000495497 UNC13AQ9UPW8 1703 aa37.94■■■■□ 3.66
HDAC4-212ENST00000495497 PABPN1Q86U42 306 aaKnown RBP eCLIP37.87■■■■□ 3.65
HDAC4-212ENST00000495497 SCRIBQ14160 1630 aa37.86■■■■□ 3.65
HDAC4-212ENST00000495497 BICRAQ9NZM4 1560 aa37.7■■■■□ 3.63
HDAC4-212ENST00000495497 SHROOM4Q9ULL8 1493 aa37.22■■■■□ 3.55
HDAC4-212ENST00000495497 DNAJC5BQ9UF47 199 aa36.94■■■■□ 3.5
HDAC4-212ENST00000495497 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
HDAC4-212ENST00000495497 CC2D2AQ9P2K1 1620 aa36.48■■■■□ 3.43
HDAC4-212ENST00000495497 CECR2Q9BXF3 1484 aa36.45■■■■□ 3.43
HDAC4-212ENST00000495497 SMARCA4P51532 1647 aa36.18■■■■□ 3.38
HDAC4-212ENST00000495497 BAZ1AQ9NRL2 1556 aaPredicted RBP36.15■■■■□ 3.38
HDAC4-212ENST00000495497 MROH2BQ7Z745 1585 aa36.06■■■■□ 3.36
HDAC4-212ENST00000495497 ATAD2BQ9ULI0 1458 aa35.96■■■■□ 3.35
HDAC4-212ENST00000495497 NCAPD3P42695 1498 aa35.87■■■■□ 3.33
HDAC4-212ENST00000495497 SMARCA2P51531 1590 aa35.85■■■■□ 3.33
HDAC4-212ENST00000495497 PEG3Q9GZU2 1588 aa35.77■■■■□ 3.32
HDAC4-212ENST00000495497 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
HDAC4-212ENST00000495497 HMGXB3Q12766 1538 aa35.67■■■■□ 3.3
HDAC4-212ENST00000495497 WIZO95785 1651 aa35.67■■■■□ 3.3
HDAC4-212ENST00000495497 BAZ1BQ9UIG0 1483 aaKnown RBP35.67■■■■□ 3.3
HDAC4-212ENST00000495497 TOP2AP11388 1531 aaKnown RBP35.26■■■■□ 3.23
HDAC4-212ENST00000495497 SUPT5HO00267 1087 aaKnown RBP35.13■■■■□ 3.21
HDAC4-212ENST00000495497 NESP48681 1621 aa35.03■■■■□ 3.2
HDAC4-212ENST00000495497 CCDC88BA6NC98 1476 aa34.91■■■■□ 3.18
HDAC4-212ENST00000495497 CADPSQ9ULU8 1353 aa34.87■■■■□ 3.17
HDAC4-212ENST00000495497 LAMC3Q9Y6N6 1575 aa34.84■■■■□ 3.17
HDAC4-212ENST00000495497 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
HDAC4-212ENST00000495497 CFTRP13569 1480 aa34.7■■■■□ 3.15
HDAC4-212ENST00000495497 PDS5BQ9NTI5 1447 aa34.64■■■■□ 3.14
HDAC4-212ENST00000495497 KIF21AQ7Z4S6 1674 aa34.54■■■■□ 3.12
HDAC4-212ENST00000495497 FANCD2Q9BXW9 1451 aa34.48■■■■□ 3.11
HDAC4-212ENST00000495497 CEP164Q9UPV0 1460 aa34.38■■■■□ 3.09
HDAC4-212ENST00000495497 THOC2Q8NI27 1593 aaKnown RBP34.35■■■■□ 3.09
HDAC4-212ENST00000495497 PRDM2Q13029 1718 aa34.32■■■■□ 3.08
HDAC4-212ENST00000495497 MRC2Q9UBG0 1479 aa34.29■■■■□ 3.08
HDAC4-212ENST00000495497 CUX2O14529 1486 aa34.22■■■■□ 3.07
HDAC4-212ENST00000495497 WDR62O43379 1518 aa34.14■■■■□ 3.06
HDAC4-212ENST00000495497 URB2Q14146 1524 aaKnown RBP34.14■■■■□ 3.06
HDAC4-212ENST00000495497 TOPBP1Q92547 1522 aa33.94■■■■□ 3.02
HDAC4-212ENST00000495497 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
HDAC4-212ENST00000495497 ABCC8Q09428 1581 aa33.87■■■■□ 3.01
HDAC4-212ENST00000495497 CUX1P39880 1505 aa33.8■■■■□ 3
HDAC4-212ENST00000495497 POLA1P09884 1462 aaPredicted RBP33.68■■■□□ 2.98
HDAC4-212ENST00000495497 WRNQ14191 1432 aaPredicted RBP eCLIP33.67■■■□□ 2.98
HDAC4-212ENST00000495497 IFT140Q96RY7 1462 aa33.65■■■□□ 2.98
HDAC4-212ENST00000495497 FGD5Q6ZNL6 1462 aa33.64■■■□□ 2.98
HDAC4-212ENST00000495497 RAD54L2Q9Y4B4 1467 aa33.6■■■□□ 2.97
HDAC4-212ENST00000495497 SYNJ1O43426 1573 aa33.58■■■□□ 2.97
HDAC4-212ENST00000495497 SOGA1O94964 1423 aa33.57■■■□□ 2.96
HDAC4-212ENST00000495497 ZNF608Q9ULD9 1512 aaPredicted RBP33.55■■■□□ 2.96
HDAC4-212ENST00000495497 TARBP1Q13395 1621 aaKnown RBP33.53■■■□□ 2.96
HDAC4-212ENST00000495497 TOP2BQ02880 1626 aa33.52■■■□□ 2.96
HDAC4-212ENST00000495497 BIVM-ERCC5R4GMW8 1640 aa33.49■■■□□ 2.95
HDAC4-212ENST00000495497 TDRD9Q8NDG6 1382 aaKnown RBP33.41■■■□□ 2.94
HDAC4-212ENST00000495497 AQRO60306 1485 aaKnown RBP eCLIP33.41■■■□□ 2.94
HDAC4-212ENST00000495497 EIF4G3O43432 1585 aaKnown RBP33.35■■■□□ 2.93
HDAC4-212ENST00000495497 ABCA10Q8WWZ4 1543 aa33.29■■■□□ 2.92
HDAC4-212ENST00000495497 WDR97A6NE52 1622 aa33.27■■■□□ 2.92
HDAC4-212ENST00000495497 GAPVD1Q14C86 1478 aa33.16■■■□□ 2.9
HDAC4-212ENST00000495497 ABCA5Q8WWZ7 1642 aa33.11■■■□□ 2.89
HDAC4-212ENST00000495497 TRIM41Q8WV44 630 aa33.11■■■□□ 2.89
HDAC4-212ENST00000495497 GRIN2BQ13224 1484 aa33.11■■■□□ 2.89
HDAC4-212ENST00000495497 SNAPC4Q5SXM2 1469 aa33.06■■■□□ 2.88
HDAC4-212ENST00000495497 PBRM1Q86U86 1689 aa33.01■■■□□ 2.88
HDAC4-212ENST00000495497 FBLN2P98095 1184 aa33■■■□□ 2.87
HDAC4-212ENST00000495497 DNAJC5Q9H3Z4 198 aa32.99■■■□□ 2.87
HDAC4-212ENST00000495497 MAGI1Q96QZ7 1491 aaPredicted RBP32.95■■■□□ 2.87
HDAC4-212ENST00000495497 OSCARQ8IYS5 282 aa32.94■■■□□ 2.86
HDAC4-212ENST00000495497 KIF27Q86VH2 1401 aa32.93■■■□□ 2.86
HDAC4-212ENST00000495497 CHIC1Q5VXU3 224 aa32.9■■■□□ 2.86
HDAC4-212ENST00000495497 CHMP7Q8WUX9 453 aaPredicted RBP32.9■■■□□ 2.86
HDAC4-212ENST00000495497 ERICH3Q5RHP9 1530 aa32.87■■■□□ 2.85
HDAC4-212ENST00000495497 CHD1O14646 1710 aa32.87■■■□□ 2.85
HDAC4-212ENST00000495497 SYNJ2O15056 1496 aa32.86■■■□□ 2.85
HDAC4-212ENST00000495497 IGF1RP08069 1367 aa32.83■■■□□ 2.85
HDAC4-212ENST00000495497 RUSC2Q8N2Y8 1516 aa32.82■■■□□ 2.84
HDAC4-212ENST00000495497 ADAMTS12P58397 1594 aa32.79■■■□□ 2.84
HDAC4-212ENST00000495497 FHAD1B1AJZ9 1412 aa32.77■■■□□ 2.84
HDAC4-212ENST00000495497 GRIN2AQ12879 1464 aa32.68■■■□□ 2.82
HDAC4-212ENST00000495497 CARMIL1Q5VZK9 1371 aa32.62■■■□□ 2.81
HDAC4-212ENST00000495497 CUL7Q14999 1698 aa32.59■■■□□ 2.81
HDAC4-212ENST00000495497 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
HDAC4-212ENST00000495497 CEP170Q5SW79 1584 aa32.53■■■□□ 2.8
HDAC4-212ENST00000495497 NUP160Q12769 1436 aa32.52■■■□□ 2.8
HDAC4-212ENST00000495497 FAM9AQ8IZU1 332 aaPredicted RBP32.51■■■□□ 2.79
HDAC4-212ENST00000495497 CSRNP3Q8WYN3 585 aa32.45■■■□□ 2.79
HDAC4-212ENST00000495497 RAPGEF2Q9Y4G8 1499 aa32.42■■■□□ 2.78
HDAC4-212ENST00000495497 EEA1Q15075 1411 aa32.4■■■□□ 2.78
HDAC4-212ENST00000495497 ARHGEF11O15085 1522 aa32.37■■■□□ 2.77
HDAC4-212ENST00000495497 PRXQ9BXM0 1461 aa32.36■■■□□ 2.77
HDAC4-212ENST00000495497 RIMBP3CA6NJZ7 1639 aa32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms