RNA–Protein interactions for RNA: ENST00000494569.5

ZIC4-216, Transcript of Zic family member 4, humanhuman

TSL 2

Gene ZIC4, Length 3,317 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4-216ENST00000494569 NISCHQ9Y2I1 1504 aa24.76■■□□□ 1.55
ZIC4-216ENST00000494569 CCDC180Q9P1Z9 1646 aa21.64■■□□□ 1.05
ZIC4-216ENST00000494569 ABCC9O60706 1549 aa21.54■■□□□ 1.04
ZIC4-216ENST00000494569 ZCCHC6Q5VYS8 1495 aaKnown RBP20.97■□□□□ 0.95
ZIC4-216ENST00000494569 DCAF1Q9Y4B6 1507 aa20.66■□□□□ 0.9
ZIC4-216ENST00000494569 RB1CC1Q8TDY2 1594 aa20.54■□□□□ 0.88
ZIC4-216ENST00000494569 DNAJC5BQ9UF47 199 aa20.46■□□□□ 0.87
ZIC4-216ENST00000494569 NACADO15069 1562 aa20.35■□□□□ 0.85
ZIC4-216ENST00000494569 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
ZIC4-216ENST00000494569 SHROOM4Q9ULL8 1493 aa20.08■□□□□ 0.81
ZIC4-216ENST00000494569 UNC13AQ9UPW8 1703 aa20.06■□□□□ 0.8
ZIC4-216ENST00000494569 BICRAQ9NZM4 1560 aa19.93■□□□□ 0.78
ZIC4-216ENST00000494569 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
ZIC4-216ENST00000494569 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
ZIC4-216ENST00000494569 SCRIBQ14160 1630 aa19.7■□□□□ 0.74
ZIC4-216ENST00000494569 CC2D2AQ9P2K1 1620 aa19.55■□□□□ 0.72
ZIC4-216ENST00000494569 CECR2Q9BXF3 1484 aa19.51■□□□□ 0.71
ZIC4-216ENST00000494569 EIF4G1Q04637 1599 aaKnown RBP19.45■□□□□ 0.7
ZIC4-216ENST00000494569 SUPT5HO00267 1087 aaKnown RBP19.38■□□□□ 0.69
ZIC4-216ENST00000494569 RSF1Q96T23 1441 aaPredicted RBP19.27■□□□□ 0.68
ZIC4-216ENST00000494569 DNAJC5Q9H3Z4 198 aa19.13■□□□□ 0.65
ZIC4-216ENST00000494569 MROH2BQ7Z745 1585 aa19.13■□□□□ 0.65
ZIC4-216ENST00000494569 BAZ1AQ9NRL2 1556 aaPredicted RBP19.07■□□□□ 0.64
ZIC4-216ENST00000494569 WIZO95785 1651 aa19.05■□□□□ 0.64
ZIC4-216ENST00000494569 SMARCA4P51532 1647 aa19.01■□□□□ 0.63
ZIC4-216ENST00000494569 PEG3Q9GZU2 1588 aa18.95■□□□□ 0.62
ZIC4-216ENST00000494569 CUX2O14529 1486 aa18.9■□□□□ 0.62
ZIC4-216ENST00000494569 CHIC1Q5VXU3 224 aa18.89■□□□□ 0.61
ZIC4-216ENST00000494569 TOP2AP11388 1531 aaKnown RBP18.84■□□□□ 0.61
ZIC4-216ENST00000494569 NCAPD3P42695 1498 aa18.76■□□□□ 0.59
ZIC4-216ENST00000494569 SMARCA2P51531 1590 aa18.73■□□□□ 0.59
ZIC4-216ENST00000494569 ERCC6Q03468 1493 aa18.65■□□□□ 0.58
ZIC4-216ENST00000494569 HMGXB3Q12766 1538 aa18.63■□□□□ 0.57
ZIC4-216ENST00000494569 ATAD2BQ9ULI0 1458 aa18.6■□□□□ 0.57
ZIC4-216ENST00000494569 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.56
ZIC4-216ENST00000494569 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
ZIC4-216ENST00000494569 NESP48681 1621 aa18.41■□□□□ 0.54
ZIC4-216ENST00000494569 LAMC3Q9Y6N6 1575 aa18.41■□□□□ 0.54
ZIC4-216ENST00000494569 BAZ1BQ9UIG0 1483 aaKnown RBP18.4■□□□□ 0.54
ZIC4-216ENST00000494569 PRDM2Q13029 1718 aa18.31■□□□□ 0.52
ZIC4-216ENST00000494569 ABCC8Q09428 1581 aa18.27■□□□□ 0.52
ZIC4-216ENST00000494569 KIF21AQ7Z4S6 1674 aa18.26■□□□□ 0.51
ZIC4-216ENST00000494569 PDS5BQ9NTI5 1447 aa18.25■□□□□ 0.51
ZIC4-216ENST00000494569 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
ZIC4-216ENST00000494569 BIVM-ERCC5R4GMW8 1640 aa18.18■□□□□ 0.5
ZIC4-216ENST00000494569 SYNJ1O43426 1573 aa18.17■□□□□ 0.5
ZIC4-216ENST00000494569 WDR62O43379 1518 aa18.14■□□□□ 0.49
ZIC4-216ENST00000494569 MRC2Q9UBG0 1479 aa18.12■□□□□ 0.49
ZIC4-216ENST00000494569 CADPSQ9ULU8 1353 aa18.11■□□□□ 0.49
ZIC4-216ENST00000494569 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.48
ZIC4-216ENST00000494569 TOP2BQ02880 1626 aa18.08■□□□□ 0.48
ZIC4-216ENST00000494569 CFTRP13569 1480 aa18.05■□□□□ 0.48
ZIC4-216ENST00000494569 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
ZIC4-216ENST00000494569 KIF21BO75037 1637 aa17.96■□□□□ 0.47
ZIC4-216ENST00000494569 CEP164Q9UPV0 1460 aa17.96■□□□□ 0.47
ZIC4-216ENST00000494569 EEA1Q15075 1411 aa17.95■□□□□ 0.46
ZIC4-216ENST00000494569 SOGA1O94964 1423 aa17.93■□□□□ 0.46
ZIC4-216ENST00000494569 RUSC2Q8N2Y8 1516 aa17.92■□□□□ 0.46
ZIC4-216ENST00000494569 FANCD2Q9BXW9 1451 aa17.89■□□□□ 0.45
ZIC4-216ENST00000494569 CUX1P39880 1505 aa17.88■□□□□ 0.45
ZIC4-216ENST00000494569 FAM9AQ8IZU1 332 aaPredicted RBP17.83■□□□□ 0.44
ZIC4-216ENST00000494569 OSCARQ8IYS5 282 aa17.82■□□□□ 0.44
ZIC4-216ENST00000494569 URB2Q14146 1524 aaKnown RBP17.77■□□□□ 0.44
ZIC4-216ENST00000494569 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
ZIC4-216ENST00000494569 WDR97A6NE52 1622 aa17.72■□□□□ 0.43
ZIC4-216ENST00000494569 TNIKQ9UKE5 1360 aa17.71■□□□□ 0.43
ZIC4-216ENST00000494569 ERICH3Q5RHP9 1530 aa17.71■□□□□ 0.43
ZIC4-216ENST00000494569 RIMBP3CA6NJZ7 1639 aa17.7■□□□□ 0.42
ZIC4-216ENST00000494569 RIMBP3BA6NNM3 1639 aa17.7■□□□□ 0.42
ZIC4-216ENST00000494569 RIMBP3Q9UFD9 1639 aa17.7■□□□□ 0.42
ZIC4-216ENST00000494569 GOLGA3Q08378 1498 aa17.7■□□□□ 0.42
ZIC4-216ENST00000494569 PRXQ9BXM0 1461 aa17.66■□□□□ 0.42
ZIC4-216ENST00000494569 IFT140Q96RY7 1462 aa17.65■□□□□ 0.42
ZIC4-216ENST00000494569 DNMBPQ6XZF7 1577 aa17.63■□□□□ 0.41
ZIC4-216ENST00000494569 CEP162Q5TB80 1403 aa17.61■□□□□ 0.41
ZIC4-216ENST00000494569 ARHGEF11O15085 1522 aa17.59■□□□□ 0.41
ZIC4-216ENST00000494569 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
ZIC4-216ENST00000494569 RAPGEF2Q9Y4G8 1499 aa17.57■□□□□ 0.4
ZIC4-216ENST00000494569 ZNF608Q9ULD9 1512 aaPredicted RBP17.55■□□□□ 0.4
ZIC4-216ENST00000494569 TOPBP1Q92547 1522 aa17.54■□□□□ 0.4
ZIC4-216ENST00000494569 KIF27Q86VH2 1401 aa17.54■□□□□ 0.4
ZIC4-216ENST00000494569 EIF4G3O43432 1585 aaKnown RBP17.52■□□□□ 0.39
ZIC4-216ENST00000494569 HRCP23327 699 aa17.5■□□□□ 0.39
ZIC4-216ENST00000494569 TRIM26Q12899 539 aaPredicted RBP17.49■□□□□ 0.39
ZIC4-216ENST00000494569 EHMT2Q96KQ7 1210 aa17.48■□□□□ 0.39
ZIC4-216ENST00000494569 ABCA10Q8WWZ4 1543 aa17.48■□□□□ 0.39
ZIC4-216ENST00000494569 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
ZIC4-216ENST00000494569 CHD1O14646 1710 aa17.45■□□□□ 0.38
ZIC4-216ENST00000494569 TARBP1Q13395 1621 aaKnown RBP17.45■□□□□ 0.38
ZIC4-216ENST00000494569 ABCA5Q8WWZ7 1642 aa17.45■□□□□ 0.38
ZIC4-216ENST00000494569 PCGF6Q9BYE7 350 aa17.44■□□□□ 0.38
ZIC4-216ENST00000494569 SLC24A1O60721 1099 aa17.43■□□□□ 0.38
ZIC4-216ENST00000494569 IGF1RP08069 1367 aa17.42■□□□□ 0.38
ZIC4-216ENST00000494569 ARAP1Q96P48 1450 aa17.4■□□□□ 0.38
ZIC4-216ENST00000494569 CUL7Q14999 1698 aa17.37■□□□□ 0.37
ZIC4-216ENST00000494569 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
ZIC4-216ENST00000494569 CLIP1P30622 1438 aa17.37■□□□□ 0.37
ZIC4-216ENST00000494569 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
ZIC4-216ENST00000494569 CTTNBP2Q8WZ74 1663 aa17.34■□□□□ 0.37
ZIC4-216ENST00000494569 VPS8Q8N3P4 1428 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms